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OBI with workshop-revised COB demo #1834

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OBI with workshop-revised COB demo #1834

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Commits on Oct 25, 2024

  1. Replace OMO import with versioned OMO import

    @sebastianduesing
    sebastianduesing committed Oct 25, 2024
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  2. Add OntoFox RO import and drop external-byhand

    @sebastianduesing
    sebastianduesing committed Oct 25, 2024
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  3. Prepare IAO import file

    @sebastianduesing
    sebastianduesing committed Oct 25, 2024
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  4. Remove BFO import

    @sebastianduesing
    sebastianduesing committed Oct 25, 2024
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  5. Add import of revised COB

    @sebastianduesing
    sebastianduesing committed Oct 25, 2024
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Commits on Oct 28, 2024

  1. Relabel alternative term to alternative label in all templates

    @sebastianduesing
    sebastianduesing committed Oct 28, 2024
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  2. Replace inheres in and bearer of with characteristic of and has chara… 

    …cteristic
    @sebastianduesing
    sebastianduesing committed Oct 28, 2024
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  3. Redirect CHEBI:atom references to COB:atom

    @sebastianduesing
    sebastianduesing committed Oct 28, 2024
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  4. Redirect CHEBI:molecular entity references to COB:molecule

    @sebastianduesing
    sebastianduesing committed Oct 28, 2024
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Commits on Oct 31, 2024

  1. Obsolete OBI:device and redirect to COB:device

    @sebastianduesing
    sebastianduesing committed Oct 31, 2024
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Commits on Nov 1, 2024

  1. Obsolete OBI:organism and redirect to COB:organism

    @sebastianduesing
    sebastianduesing committed Nov 1, 2024
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  2. Obsolete OBI:planned process and redirect to COB:CEPP

    @sebastianduesing
    sebastianduesing committed Nov 1, 2024
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  3. Obsolete OBI:material processing and redirect to COB:material processing

    @sebastianduesing
    sebastianduesing committed Nov 1, 2024
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  4. Line order update to obi-edit by Protege

    @sebastianduesing
    sebastianduesing committed Nov 1, 2024
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  5. Remove BFO:0000001

    @sebastianduesing
    sebastianduesing committed Nov 1, 2024
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  6. Remove BFO:0000002

    @sebastianduesing
    sebastianduesing committed Nov 1, 2024
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  7. Remove BFO:0000003

    @sebastianduesing
    sebastianduesing committed Nov 1, 2024
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  8. Remove BFO:0000004

    @sebastianduesing
    sebastianduesing committed Nov 1, 2024
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  9. Remove BFO:0000019

    @sebastianduesing
    sebastianduesing committed Nov 1, 2024
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  10. Remove BFO:0000020

    @sebastianduesing
    sebastianduesing committed Nov 1, 2024
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  11. Remove BFO:0000028

    @sebastianduesing
    sebastianduesing committed Nov 1, 2024
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  12. Remove one usage of BFO:0000031

    @sebastianduesing
    sebastianduesing committed Nov 1, 2024
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  13. Line order update by Protege

    @sebastianduesing
    sebastianduesing committed Nov 1, 2024
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  14. Remove BFO:0000035

    @sebastianduesing
    sebastianduesing committed Nov 1, 2024
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  15. Fix duplicate labels

    @sebastianduesing
    sebastianduesing committed Nov 1, 2024
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  16. Obsolete OBI:processed material and redirect to COB:processed materia… 

    …l entity
    @sebastianduesing
    sebastianduesing committed Nov 1, 2024
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Commits on Nov 6, 2024

  1. Update version of COB

    @sebastianduesing
    sebastianduesing committed Nov 6, 2024
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  2. Remove unused BFO_0000066

    @sebastianduesing
    sebastianduesing committed Nov 6, 2024
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  3. Relabel terms in templates

    @sebastianduesing
    sebastianduesing committed Nov 6, 2024
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  4. Import 'realized in'

    @sebastianduesing
    sebastianduesing committed Nov 6, 2024
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  5. Fix weird quoting in assays.tsv

    @sebastianduesing
    sebastianduesing committed Nov 6, 2024
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  6. Run make modules

    @sebastianduesing
    sebastianduesing committed Nov 6, 2024
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Commits on Nov 13, 2024

  1. Update OMO version

    @sebastianduesing
    sebastianduesing committed Nov 13, 2024
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