From d44e860f29620739482b78e922dbc12b326516ea Mon Sep 17 00:00:00 2001 From: Sebastian Duesing Date: Wed, 7 Feb 2024 13:39:28 -0600 Subject: [PATCH 1/2] Adds minimum resolved unit of measurement --- src/ontology/obi-edit.owl | 64 +++++++++++++++------------------------ 1 file changed, 24 insertions(+), 40 deletions(-) diff --git a/src/ontology/obi-edit.owl b/src/ontology/obi-edit.owl index baca796d..07059eaf 100644 --- a/src/ontology/obi-edit.owl +++ b/src/ontology/obi-edit.owl @@ -39,7 +39,7 @@ - + @@ -5538,9 +5538,6 @@ for now. - - - @@ -6577,7 +6574,8 @@ activity) - + + @@ -6618,9 +6616,9 @@ activity) OBI Biomaterial injection - + @@ -6672,8 +6670,6 @@ that has_part some material entity is a material entity. If we add as equivalent - - @@ -9803,8 +9799,6 @@ http://en.wikipedia.org/wiki/Survival_rate - - @@ -11032,7 +11026,6 @@ Added duirng Mar 1, 2010 dev call - @@ -11101,7 +11094,6 @@ Added duirng Mar 1, 2010 dev call - @@ -11253,8 +11245,6 @@ Biochimie. 2010 Feb 18. - - @@ -11279,8 +11269,6 @@ A blood specimen that has been centrifuged to obtain the white blood cells. @@ -11630,8 +11618,6 @@ In the examples above, a reagent is an operational component of a device, but th - - @@ -11723,8 +11709,6 @@ In the examples above, a reagent is an operational component of a device, but th - - @@ -12638,8 +12622,6 @@ All subtype will be defined by textual definition now. - - @@ -20673,8 +20655,6 @@ b) that the amount of analyte/measurand detected is over some predetermined thre - - @@ -21610,11 +21590,6 @@ b) that the amount of analyte/measurand detected is over some predetermined thre - - - - - @@ -21696,9 +21671,6 @@ b) that the amount of analyte/measurand detected is over some predetermined thre - - - @@ -21750,9 +21722,9 @@ b) that the amount of analyte/measurand detected is over some predetermined thre https://github.com/obi-ontology/obi/issues/1703 scratching - - + + @@ -21961,6 +21933,21 @@ b) that the amount of analyte/measurand detected is over some predetermined thre + + + + + An information content entity that indicates the smallest value that can be resolved on the scale of a measurement instrument. + Sebastian Duesing + least count + https://en.wikipedia.org/wiki/Least_count + https://github.com/obi-ontology/obi/issues/506 + Philippe Rocca-Serra + minimum resolved unit of measurement + + + + @@ -22319,7 +22306,7 @@ A cultured cell population maintained in vitro: "Rat cortical neurons from - + primary cultured cell population Spleen cells put directly into culture; Cold storage of biopsies from wild endangered native Chilean species in field conditions and subsequent isolation of primary culture cell lines. In Vitro Cell Dev Biol Anim. 2008 Jul 2. PMID: 18594934 cells that have been isolated from some organismal source, expanded in culture, but not undergone a complete passaging (ie are still in culture, or have been lifted from culture and frozen in aliquots for future use) @@ -22332,7 +22319,7 @@ A cultured cell population maintained in vitro: "Rat cortical neurons from PERSON:Matthew Brush primary cultured cell population - + 0 @@ -22340,7 +22327,7 @@ A cultured cell population maintained in vitro: "Rat cortical neurons from - + consider if we really want to be so strict here . . . ie maybe we we say that they have not been output from an 'establishing cell line' process, but in some cases a passage or two may be allowed for a primary culture. the establishing of a line requires some procedss that attains a degree of homogeneity in the culture. @@ -29757,9 +29744,6 @@ Possible ecological risks of transgenic organism release when transgenes affect - - - From dbcc92d3c4e7d05e1d2521e04999f38d9c444d3a Mon Sep 17 00:00:00 2001 From: Sebastian Duesing Date: Mon, 26 Feb 2024 14:43:00 -0600 Subject: [PATCH 2/2] Update with change discussed in OBI dev call --- src/ontology/obi-edit.owl | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/src/ontology/obi-edit.owl b/src/ontology/obi-edit.owl index 07059eaf..4d7be83b 100644 --- a/src/ontology/obi-edit.owl +++ b/src/ontology/obi-edit.owl @@ -21937,7 +21937,7 @@ b) that the amount of analyte/measurand detected is over some predetermined thre - An information content entity that indicates the smallest value that can be resolved on the scale of a measurement instrument. + An information content entity that indicates the smallest increment that can be resolved on the scale of a measurement instrument. Sebastian Duesing least count https://en.wikipedia.org/wiki/Least_count