diff --git a/.github/workflows/first_startup.yaml b/.github/workflows/first_startup.yaml index e35170d063a0..05efc45367b9 100644 --- a/.github/workflows/first_startup.yaml +++ b/.github/workflows/first_startup.yaml @@ -23,7 +23,7 @@ jobs: strategy: fail-fast: false matrix: - python-version: ['3.8', '3.12'] + python-version: ['3.8', '3.13'] defaults: run: shell: bash -l {0} diff --git a/.github/workflows/lint.yaml b/.github/workflows/lint.yaml index 748ec5329b80..51c742edd552 100644 --- a/.github/workflows/lint.yaml +++ b/.github/workflows/lint.yaml @@ -22,7 +22,7 @@ jobs: strategy: fail-fast: false matrix: - python-version: ['3.8', '3.12'] + python-version: ['3.8', '3.13'] env: LINT_PATH: 'lib/galaxy/dependencies/pinned-lint-requirements.txt' TYPE_PATH: 'lib/galaxy/dependencies/pinned-typecheck-requirements.txt' diff --git a/.github/workflows/lint_openapi_schema.yml b/.github/workflows/lint_openapi_schema.yml index 2a94508ce6f2..4dc692fc2739 100644 --- a/.github/workflows/lint_openapi_schema.yml +++ b/.github/workflows/lint_openapi_schema.yml @@ -20,7 +20,7 @@ jobs: strategy: fail-fast: false matrix: - python-version: ['3.8', '3.12'] + python-version: ['3.8', '3.13'] steps: - uses: actions/checkout@v4 with: diff --git a/.github/workflows/osx_startup.yaml b/.github/workflows/osx_startup.yaml index 22ffc4d7e5b6..13960eb8e85f 100644 --- a/.github/workflows/osx_startup.yaml +++ b/.github/workflows/osx_startup.yaml @@ -21,7 +21,7 @@ jobs: strategy: fail-fast: false matrix: - python-version: ['3.8', '3.12'] + python-version: ['3.8', '3.13'] defaults: run: shell: bash -l {0} diff --git a/.github/workflows/reports_startup.yaml b/.github/workflows/reports_startup.yaml index 137c1a5e1204..b7449dc5979c 100644 --- a/.github/workflows/reports_startup.yaml +++ b/.github/workflows/reports_startup.yaml @@ -18,7 +18,7 @@ jobs: strategy: fail-fast: false matrix: - python-version: ['3.8', '3.12'] + python-version: ['3.8', '3.13'] defaults: run: shell: bash -l {0} diff --git a/.github/workflows/test_galaxy_packages.yaml b/.github/workflows/test_galaxy_packages.yaml index 293e98e658bd..f38f05846e74 100644 --- a/.github/workflows/test_galaxy_packages.yaml +++ b/.github/workflows/test_galaxy_packages.yaml @@ -18,7 +18,7 @@ jobs: strategy: fail-fast: false matrix: - python-version: ['3.8', '3.12'] + python-version: ['3.8', '3.13'] steps: - uses: actions/checkout@v4 with: diff --git a/.github/workflows/toolshed.yaml b/.github/workflows/toolshed.yaml index fae33b4e1225..14be278e16bc 100644 --- a/.github/workflows/toolshed.yaml +++ b/.github/workflows/toolshed.yaml @@ -21,7 +21,7 @@ jobs: strategy: fail-fast: false matrix: - python-version: ['3.8', '3.12'] + python-version: ['3.8', '3.13'] shed-api: ['v1', 'v2'] test-install-client: ['galaxy_api', 'standalone'] services: diff --git a/.github/workflows/unit.yaml b/.github/workflows/unit.yaml index 80f54e87a704..671dcac0162d 100644 --- a/.github/workflows/unit.yaml +++ b/.github/workflows/unit.yaml @@ -20,7 +20,7 @@ jobs: strategy: fail-fast: false matrix: - python-version: ['3.8', '3.12'] + python-version: ['3.8', '3.13'] steps: - uses: actions/checkout@v4 with: diff --git a/lib/galaxy/dependencies/dev-requirements.txt b/lib/galaxy/dependencies/dev-requirements.txt index 39cf4dca07ca..80c4259fd3cc 100644 --- a/lib/galaxy/dependencies/dev-requirements.txt +++ b/lib/galaxy/dependencies/dev-requirements.txt @@ -1,185 +1,185 @@ -aiohappyeyeballs==2.4.0 ; python_version >= "3.8" and python_version < "3.13" -aiohttp==3.10.5 ; python_version >= "3.8" and python_version < "3.13" -aiosignal==1.3.1 ; python_version >= "3.8" and python_version < "3.13" -alabaster==0.7.13 ; python_version >= "3.8" and python_version < "3.13" -anyio==4.5.0 ; python_version >= "3.8" and python_version < "3.13" -ase==3.23.0 ; python_version >= "3.8" and python_version < "3.13" +aiohappyeyeballs==2.4.0 ; python_version >= "3.8" and python_version < "3.14" +aiohttp==3.10.5 ; python_version >= "3.8" and python_version < "3.14" +aiosignal==1.3.1 ; python_version >= "3.8" and python_version < "3.14" +alabaster==0.7.13 ; python_version >= "3.8" and python_version < "3.14" +anyio==4.5.0 ; python_version >= "3.8" and python_version < "3.14" +ase==3.23.0 ; python_version >= "3.8" and python_version < "3.14" async-timeout==4.0.3 ; python_version >= "3.8" and python_version < "3.11" -attrs==24.2.0 ; python_version >= "3.8" and python_version < "3.13" -axe-selenium-python==2.1.6 ; python_version >= "3.8" and python_version < "3.13" -babel==2.16.0 ; python_version >= "3.8" and python_version < "3.13" +attrs==24.2.0 ; python_version >= "3.8" and python_version < "3.14" +axe-selenium-python==2.1.6 ; python_version >= "3.8" and python_version < "3.14" +babel==2.16.0 ; python_version >= "3.8" and python_version < "3.14" backports-tarfile==1.2.0 ; python_version >= "3.8" and python_version < "3.12" backports-zoneinfo==0.2.1 ; python_version >= "3.8" and python_version < "3.9" -black==24.8.0 ; python_version >= "3.8" and python_version < "3.13" -boto3==1.35.23 ; python_version >= "3.8" and python_version < "3.13" -botocore==1.35.23 ; python_version >= "3.8" and python_version < "3.13" -build==1.2.2 ; python_version >= "3.8" and python_version < "3.13" -cachecontrol[filecache]==0.14.0 ; python_version >= "3.8" and python_version < "3.13" -certifi==2024.8.30 ; python_version >= "3.8" and python_version < "3.13" -cffi==1.17.1 ; python_version >= "3.8" and python_version < "3.13" -charset-normalizer==3.3.2 ; python_version >= "3.8" and python_version < "3.13" -click==8.1.7 ; python_version >= "3.8" and python_version < "3.13" -codespell==2.3.0 ; python_version >= "3.8" and python_version < "3.13" -colorama==0.4.6 ; python_version >= "3.8" and python_version < "3.13" and (sys_platform == "win32" or platform_system == "Windows" or os_name == "nt") +black==24.8.0 ; python_version >= "3.8" and python_version < "3.14" +boto3==1.35.23 ; python_version >= "3.8" and python_version < "3.14" +botocore==1.35.23 ; python_version >= "3.8" and python_version < "3.14" +build==1.2.2 ; python_version >= "3.8" and python_version < "3.14" +cachecontrol[filecache]==0.14.0 ; python_version >= "3.8" and python_version < "3.14" +certifi==2024.8.30 ; python_version >= "3.8" and python_version < "3.14" +cffi==1.17.1 ; python_version >= "3.8" and python_version < "3.14" +charset-normalizer==3.3.2 ; python_version >= "3.8" and python_version < "3.14" +click==8.1.7 ; python_version >= "3.8" and python_version < "3.14" +codespell==2.3.0 ; python_version >= "3.8" and python_version < "3.14" +colorama==0.4.6 ; python_version >= "3.8" and python_version < "3.14" and (sys_platform == "win32" or platform_system == "Windows" or os_name == "nt") contourpy==1.1.1 ; python_version >= "3.8" and python_version < "3.9" -contourpy==1.3.0 ; python_version >= "3.9" and python_version < "3.13" -coverage[toml]==7.6.1 ; python_version >= "3.8" and python_version < "3.13" -cryptography==43.0.1 ; python_version >= "3.8" and python_version < "3.13" -cwltest==2.5.20240906231108 ; python_version >= "3.8" and python_version < "3.13" -cycler==0.12.1 ; python_version >= "3.8" and python_version < "3.13" -darker==2.1.1 ; python_version >= "3.8" and python_version < "3.13" -darkgraylib==1.2.1 ; python_version >= "3.8" and python_version < "3.13" -decorator==5.1.1 ; python_version >= "3.9" and python_version < "3.13" -defusedxml==0.7.1 ; python_version >= "3.8" and python_version < "3.13" -deprecated==1.2.14 ; python_version >= "3.8" and python_version < "3.13" -docutils==0.20.1 ; python_version >= "3.8" and python_version < "3.13" -dogpile-cache==1.3.3 ; python_version >= "3.9" and python_version < "3.13" +contourpy==1.3.0 ; python_version >= "3.9" and python_version < "3.14" +coverage[toml]==7.6.1 ; python_version >= "3.8" and python_version < "3.14" +cryptography==43.0.1 ; python_version >= "3.8" and python_version < "3.14" +cwltest==2.5.20240906231108 ; python_version >= "3.8" and python_version < "3.14" +cycler==0.12.1 ; python_version >= "3.8" and python_version < "3.14" +darker==2.1.1 ; python_version >= "3.8" and python_version < "3.14" +darkgraylib==1.2.1 ; python_version >= "3.8" and python_version < "3.14" +decorator==5.1.1 ; python_version >= "3.9" and python_version < "3.14" +defusedxml==0.7.1 ; python_version >= "3.8" and python_version < "3.14" +deprecated==1.2.14 ; python_version >= "3.8" and python_version < "3.14" +docutils==0.20.1 ; python_version >= "3.8" and python_version < "3.14" +dogpile-cache==1.3.3 ; python_version >= "3.9" and python_version < "3.14" exceptiongroup==1.2.2 ; python_version >= "3.8" and python_version < "3.11" -filelock==3.16.1 ; python_version >= "3.8" and python_version < "3.13" -fluent-logger==0.11.1 ; python_version >= "3.8" and python_version < "3.13" -fonttools==4.53.1 ; python_version >= "3.8" and python_version < "3.13" -frozenlist==1.4.1 ; python_version >= "3.8" and python_version < "3.13" -galaxy-release-util==0.1.11 ; python_version >= "3.8" and python_version < "3.13" -graylint==1.1.1 ; python_version >= "3.8" and python_version < "3.13" -greenlet==3.0.3 ; python_version >= "3.8" and python_version < "3.13" -h11==0.14.0 ; python_version >= "3.8" and python_version < "3.13" -httpcore==1.0.5 ; python_version >= "3.8" and python_version < "3.13" -httpx==0.27.2 ; python_version >= "3.8" and python_version < "3.13" -idna==3.10 ; python_version >= "3.8" and python_version < "3.13" -imagesize==1.4.1 ; python_version >= "3.8" and python_version < "3.13" -importlib-metadata==8.5.0 ; python_version >= "3.8" and python_version < "3.13" +filelock==3.16.1 ; python_version >= "3.8" and python_version < "3.14" +fluent-logger==0.11.1 ; python_version >= "3.8" and python_version < "3.14" +fonttools==4.53.1 ; python_version >= "3.8" and python_version < "3.14" +frozenlist==1.4.1 ; python_version >= "3.8" and python_version < "3.14" +galaxy-release-util==0.1.11 ; python_version >= "3.8" and python_version < "3.14" +graylint==1.1.1 ; python_version >= "3.8" and python_version < "3.14" +greenlet==3.0.3 ; python_version >= "3.8" and python_version < "3.14" +h11==0.14.0 ; python_version >= "3.8" and python_version < "3.14" +httpcore==1.0.5 ; python_version >= "3.8" and python_version < "3.14" +httpx==0.27.2 ; python_version >= "3.8" and python_version < "3.14" +idna==3.10 ; python_version >= "3.8" and python_version < "3.14" +imagesize==1.4.1 ; python_version >= "3.8" and python_version < "3.14" +importlib-metadata==8.5.0 ; python_version >= "3.8" and python_version < "3.14" importlib-resources==6.4.5 ; python_version >= "3.8" and python_version < "3.10" -iniconfig==2.0.0 ; python_version >= "3.8" and python_version < "3.13" -isodate==0.6.1 ; python_version >= "3.8" and python_version < "3.13" -isort==5.13.2 ; python_version >= "3.8" and python_version < "3.13" -jaraco-classes==3.4.0 ; python_version >= "3.8" and python_version < "3.13" -jaraco-context==6.0.1 ; python_version >= "3.8" and python_version < "3.13" -jaraco-functools==4.0.2 ; python_version >= "3.8" and python_version < "3.13" -jeepney==0.8.0 ; python_version >= "3.8" and python_version < "3.13" and sys_platform == "linux" -jinja2==3.1.4 ; python_version >= "3.8" and python_version < "3.13" -jmespath==1.0.1 ; python_version >= "3.8" and python_version < "3.13" -jsonschema-specifications==2023.12.1 ; python_version >= "3.9" and python_version < "3.13" -jsonschema==4.23.0 ; python_version >= "3.9" and python_version < "3.13" -junit-xml==1.9 ; python_version >= "3.8" and python_version < "3.13" -keyring==25.4.1 ; python_version >= "3.8" and python_version < "3.13" -kiwisolver==1.4.7 ; python_version >= "3.8" and python_version < "3.13" -lxml==5.3.0 ; python_version >= "3.8" and python_version < "3.13" -markdown-it-py==3.0.0 ; python_version >= "3.8" and python_version < "3.13" -markdown-it-reporter==0.0.2 ; python_version >= "3.8" and python_version < "3.13" -markupsafe==2.1.5 ; python_version >= "3.8" and python_version < "3.13" +iniconfig==2.0.0 ; python_version >= "3.8" and python_version < "3.14" +isodate==0.6.1 ; python_version >= "3.8" and python_version < "3.14" +isort==5.13.2 ; python_version >= "3.8" and python_version < "3.14" +jaraco-classes==3.4.0 ; python_version >= "3.8" and python_version < "3.14" +jaraco-context==6.0.1 ; python_version >= "3.8" and python_version < "3.14" +jaraco-functools==4.0.2 ; python_version >= "3.8" and python_version < "3.14" +jeepney==0.8.0 ; python_version >= "3.8" and python_version < "3.14" and sys_platform == "linux" +jinja2==3.1.4 ; python_version >= "3.8" and python_version < "3.14" +jmespath==1.0.1 ; python_version >= "3.8" and python_version < "3.14" +jsonschema-specifications==2023.12.1 ; python_version >= "3.9" and python_version < "3.14" +jsonschema==4.23.0 ; python_version >= "3.9" and python_version < "3.14" +junit-xml==1.9 ; python_version >= "3.8" and python_version < "3.14" +keyring==25.4.1 ; python_version >= "3.8" and python_version < "3.14" +kiwisolver==1.4.7 ; python_version >= "3.8" and python_version < "3.14" +lxml==5.3.0 ; python_version >= "3.8" and python_version < "3.14" +markdown-it-py==3.0.0 ; python_version >= "3.8" and python_version < "3.14" +markdown-it-reporter==0.0.2 ; python_version >= "3.8" and python_version < "3.14" +markupsafe==2.1.5 ; python_version >= "3.8" and python_version < "3.14" matplotlib==3.7.5 ; python_version >= "3.8" and python_version < "3.9" -matplotlib==3.9.2 ; python_version >= "3.9" and python_version < "3.13" -mdit-py-plugins==0.4.2 ; python_version >= "3.8" and python_version < "3.13" -mdurl==0.1.2 ; python_version >= "3.8" and python_version < "3.13" -mirakuru==2.5.2 ; python_version >= "3.8" and python_version < "3.13" -mistune==3.0.2 ; python_version >= "3.8" and python_version < "3.13" -more-itertools==10.5.0 ; python_version >= "3.8" and python_version < "3.13" -msgpack==1.1.0 ; python_version >= "3.8" and python_version < "3.13" -multidict==6.1.0 ; python_version >= "3.8" and python_version < "3.13" -mypy-extensions==1.0.0 ; python_version >= "3.8" and python_version < "3.13" -myst-parser==3.0.1 ; python_version >= "3.8" and python_version < "3.13" -nh3==0.2.18 ; python_version >= "3.8" and python_version < "3.13" +matplotlib==3.9.2 ; python_version >= "3.9" and python_version < "3.14" +mdit-py-plugins==0.4.2 ; python_version >= "3.8" and python_version < "3.14" +mdurl==0.1.2 ; python_version >= "3.8" and python_version < "3.14" +mirakuru==2.5.2 ; python_version >= "3.8" and python_version < "3.14" +mistune==3.0.2 ; python_version >= "3.8" and python_version < "3.14" +more-itertools==10.5.0 ; python_version >= "3.8" and python_version < "3.14" +msgpack==1.1.0 ; python_version >= "3.8" and python_version < "3.14" +multidict==6.1.0 ; python_version >= "3.8" and python_version < "3.14" +mypy-extensions==1.0.0 ; python_version >= "3.8" and python_version < "3.14" +myst-parser==3.0.1 ; python_version >= "3.8" and python_version < "3.14" +nh3==0.2.18 ; python_version >= "3.8" and python_version < "3.14" numpy==1.24.4 ; python_version >= "3.8" and python_version < "3.9" numpy==2.0.2 ; python_version >= "3.9" and python_version < "3.10" -numpy==2.1.1 ; python_version >= "3.10" and python_version < "3.13" -onedatafilerestclient==21.2.5.2 ; python_version >= "3.8" and python_version < "3.13" -outcome==1.3.0.post0 ; python_version >= "3.8" and python_version < "3.13" -packaging==24.1 ; python_version >= "3.8" and python_version < "3.13" -pathspec==0.12.1 ; python_version >= "3.8" and python_version < "3.13" -pbr==6.1.0 ; python_version >= "3.9" and python_version < "3.13" -pillow==10.4.0 ; python_version >= "3.8" and python_version < "3.13" -pkce==1.0.3 ; python_version >= "3.8" and python_version < "3.13" -pkginfo==1.10.0 ; python_version >= "3.8" and python_version < "3.13" -platformdirs==4.3.6 ; python_version >= "3.8" and python_version < "3.13" -playwright==1.47.0 ; python_version >= "3.8" and python_version < "3.13" -pluggy==1.5.0 ; python_version >= "3.8" and python_version < "3.13" -port-for==0.7.3 ; python_version >= "3.8" and python_version < "3.13" -prettytable==3.11.0 ; python_version >= "3.8" and python_version < "3.13" -psutil==6.0.0 ; python_version >= "3.8" and python_version < "3.13" and sys_platform != "cygwin" -psycopg==3.2.2 ; python_version >= "3.8" and python_version < "3.13" -pycparser==2.22 ; python_version >= "3.8" and python_version < "3.13" -pyee==12.0.0 ; python_version >= "3.8" and python_version < "3.13" -pygithub==2.4.0 ; python_version >= "3.8" and python_version < "3.13" -pygments==2.18.0 ; python_version >= "3.8" and python_version < "3.13" -pyjwt[crypto]==2.9.0 ; python_version >= "3.8" and python_version < "3.13" -pynacl==1.5.0 ; python_version >= "3.8" and python_version < "3.13" -pyparsing==3.1.4 ; python_version >= "3.8" and python_version < "3.13" -pyproject-hooks==1.1.0 ; python_version >= "3.8" and python_version < "3.13" -pysocks==1.7.1 ; python_version >= "3.8" and python_version < "3.13" -pytest-asyncio==0.23.8 ; python_version >= "3.8" and python_version < "3.13" -pytest-base-url==2.1.0 ; python_version >= "3.8" and python_version < "3.13" -pytest-cov==5.0.0 ; python_version >= "3.8" and python_version < "3.13" -pytest-html==4.1.1 ; python_version >= "3.8" and python_version < "3.13" -pytest-httpserver==1.1.0 ; python_version >= "3.8" and python_version < "3.13" -pytest-json-report==1.5.0 ; python_version >= "3.8" and python_version < "3.13" -pytest-metadata==3.1.1 ; python_version >= "3.8" and python_version < "3.13" -pytest-mock==3.14.0 ; python_version >= "3.8" and python_version < "3.13" -pytest-playwright==0.5.2 ; python_version >= "3.8" and python_version < "3.13" -pytest-postgresql==6.1.1 ; python_version >= "3.8" and python_version < "3.13" -pytest-shard==0.1.2 ; python_version >= "3.8" and python_version < "3.13" -pytest==7.4.4 ; python_version >= "3.8" and python_version < "3.13" -python-dateutil==2.9.0.post0 ; python_version >= "3.8" and python_version < "3.13" -python-irodsclient==2.1.0 ; python_version >= "3.8" and python_version < "3.13" -python-slugify==8.0.4 ; python_version >= "3.8" and python_version < "3.13" +numpy==2.1.1 ; python_version >= "3.10" and python_version < "3.14" +onedatafilerestclient==21.2.5.2 ; python_version >= "3.8" and python_version < "3.14" +outcome==1.3.0.post0 ; python_version >= "3.8" and python_version < "3.14" +packaging==24.1 ; python_version >= "3.8" and python_version < "3.14" +pathspec==0.12.1 ; python_version >= "3.8" and python_version < "3.14" +pbr==6.1.0 ; python_version >= "3.9" and python_version < "3.14" +pillow==10.4.0 ; python_version >= "3.8" and python_version < "3.14" +pkce==1.0.3 ; python_version >= "3.8" and python_version < "3.14" +pkginfo==1.10.0 ; python_version >= "3.8" and python_version < "3.14" +platformdirs==4.3.6 ; python_version >= "3.8" and python_version < "3.14" +playwright==1.47.0 ; python_version >= "3.8" and python_version < "3.14" +pluggy==1.5.0 ; python_version >= "3.8" and python_version < "3.14" +port-for==0.7.3 ; python_version >= "3.8" and python_version < "3.14" +prettytable==3.11.0 ; python_version >= "3.8" and python_version < "3.14" +psutil==6.0.0 ; python_version >= "3.8" and python_version < "3.14" and sys_platform != "cygwin" +psycopg==3.2.2 ; python_version >= "3.8" and python_version < "3.14" +pycparser==2.22 ; python_version >= "3.8" and python_version < "3.14" +pyee==12.0.0 ; python_version >= "3.8" and python_version < "3.14" +pygithub==2.4.0 ; python_version >= "3.8" and python_version < "3.14" +pygments==2.18.0 ; python_version >= "3.8" and python_version < "3.14" +pyjwt[crypto]==2.9.0 ; python_version >= "3.8" and python_version < "3.14" +pynacl==1.5.0 ; python_version >= "3.8" and python_version < "3.14" +pyparsing==3.1.4 ; python_version >= "3.8" and python_version < "3.14" +pyproject-hooks==1.1.0 ; python_version >= "3.8" and python_version < "3.14" +pysocks==1.7.1 ; python_version >= "3.8" and python_version < "3.14" +pytest-asyncio==0.23.8 ; python_version >= "3.8" and python_version < "3.14" +pytest-base-url==2.1.0 ; python_version >= "3.8" and python_version < "3.14" +pytest-cov==5.0.0 ; python_version >= "3.8" and python_version < "3.14" +pytest-html==4.1.1 ; python_version >= "3.8" and python_version < "3.14" +pytest-httpserver==1.1.0 ; python_version >= "3.8" and python_version < "3.14" +pytest-json-report==1.5.0 ; python_version >= "3.8" and python_version < "3.14" +pytest-metadata==3.1.1 ; python_version >= "3.8" and python_version < "3.14" +pytest-mock==3.14.0 ; python_version >= "3.8" and python_version < "3.14" +pytest-playwright==0.5.2 ; python_version >= "3.8" and python_version < "3.14" +pytest-postgresql==6.1.1 ; python_version >= "3.8" and python_version < "3.14" +pytest-shard==0.1.2 ; python_version >= "3.8" and python_version < "3.14" +pytest==7.4.4 ; python_version >= "3.8" and python_version < "3.14" +python-dateutil==2.9.0.post0 ; python_version >= "3.8" and python_version < "3.14" +python-irodsclient==2.1.0 ; python_version >= "3.8" and python_version < "3.14" +python-slugify==8.0.4 ; python_version >= "3.8" and python_version < "3.14" pytz==2024.2 ; python_version >= "3.8" and python_version < "3.9" -pywin32-ctypes==0.2.3 ; python_version >= "3.8" and python_version < "3.13" and sys_platform == "win32" -pyyaml==6.0.2 ; python_version >= "3.8" and python_version < "3.13" -rdflib==6.3.2 ; python_version >= "3.8" and python_version < "3.13" -readme-renderer==43.0 ; python_version >= "3.8" and python_version < "3.13" -referencing==0.35.1 ; python_version >= "3.9" and python_version < "3.13" -requests-toolbelt==1.0.0 ; python_version >= "3.8" and python_version < "3.13" -requests==2.32.3 ; python_version >= "3.8" and python_version < "3.13" -responses==0.25.3 ; python_version >= "3.8" and python_version < "3.13" -rfc3986==2.0.0 ; python_version >= "3.8" and python_version < "3.13" -rich==13.8.1 ; python_version >= "3.8" and python_version < "3.13" -rpds-py==0.20.0 ; python_version >= "3.9" and python_version < "3.13" +pywin32-ctypes==0.2.3 ; python_version >= "3.8" and python_version < "3.14" and sys_platform == "win32" +pyyaml==6.0.2 ; python_version >= "3.8" and python_version < "3.14" +rdflib==6.3.2 ; python_version >= "3.8" and python_version < "3.14" +readme-renderer==43.0 ; python_version >= "3.8" and python_version < "3.14" +referencing==0.35.1 ; python_version >= "3.9" and python_version < "3.14" +requests-toolbelt==1.0.0 ; python_version >= "3.8" and python_version < "3.14" +requests==2.32.3 ; python_version >= "3.8" and python_version < "3.14" +responses==0.25.3 ; python_version >= "3.8" and python_version < "3.14" +rfc3986==2.0.0 ; python_version >= "3.8" and python_version < "3.14" +rich==13.8.1 ; python_version >= "3.8" and python_version < "3.14" +rpds-py==0.20.0 ; python_version >= "3.9" and python_version < "3.14" ruamel-yaml-clib==0.2.8 ; platform_python_implementation == "CPython" and python_version < "3.13" and python_version >= "3.8" -ruamel-yaml==0.18.6 ; python_version >= "3.8" and python_version < "3.13" -rucio-clients==35.3.0 ; python_version >= "3.9" and python_version < "3.13" -s3transfer==0.10.2 ; python_version >= "3.8" and python_version < "3.13" -schema-salad==8.7.20240905150001 ; python_version >= "3.8" and python_version < "3.13" +ruamel-yaml==0.18.6 ; python_version >= "3.8" and python_version < "3.14" +rucio-clients==35.3.0 ; python_version >= "3.9" and python_version < "3.14" +s3transfer==0.10.2 ; python_version >= "3.8" and python_version < "3.14" +schema-salad==8.7.20240905150001 ; python_version >= "3.8" and python_version < "3.14" scipy==1.10.1 ; python_version >= "3.8" and python_version < "3.9" scipy==1.13.1 ; python_version >= "3.9" and python_version < "3.10" -scipy==1.14.1 ; python_version >= "3.10" and python_version < "3.13" -secretstorage==3.3.3 ; python_version >= "3.8" and python_version < "3.13" and sys_platform == "linux" -selenium==4.25.0 ; python_version >= "3.8" and python_version < "3.13" -seletools==1.5.0 ; python_version >= "3.8" and python_version < "3.13" -setuptools==75.1.0 ; python_version >= "3.8" and python_version < "3.13" -six==1.16.0 ; python_version >= "3.8" and python_version < "3.13" -sniffio==1.3.1 ; python_version >= "3.8" and python_version < "3.13" -snowballstemmer==2.2.0 ; python_version >= "3.8" and python_version < "3.13" -sortedcontainers==2.4.0 ; python_version >= "3.8" and python_version < "3.13" -sphinx-rtd-theme==2.0.0 ; python_version >= "3.8" and python_version < "3.13" -sphinx==7.1.2 ; python_version >= "3.8" and python_version < "3.13" -sphinxcontrib-applehelp==1.0.4 ; python_version >= "3.8" and python_version < "3.13" -sphinxcontrib-devhelp==1.0.2 ; python_version >= "3.8" and python_version < "3.13" -sphinxcontrib-htmlhelp==2.0.1 ; python_version >= "3.8" and python_version < "3.13" -sphinxcontrib-jquery==4.1 ; python_version >= "3.8" and python_version < "3.13" -sphinxcontrib-jsmath==1.0.1 ; python_version >= "3.8" and python_version < "3.13" -sphinxcontrib-qthelp==1.0.3 ; python_version >= "3.8" and python_version < "3.13" -sphinxcontrib-serializinghtml==1.1.5 ; python_version >= "3.8" and python_version < "3.13" -statsd==4.0.1 ; python_version >= "3.8" and python_version < "3.13" -stevedore==5.3.0 ; python_version >= "3.9" and python_version < "3.13" -tabulate==0.9.0 ; python_version >= "3.9" and python_version < "3.13" -testfixtures==8.3.0 ; python_version >= "3.8" and python_version < "3.13" -text-unidecode==1.3 ; python_version >= "3.8" and python_version < "3.13" -tinydb==4.8.0 ; python_version >= "3.8" and python_version < "3.13" -toml==0.10.2 ; python_version >= "3.8" and python_version < "3.13" +scipy==1.14.1 ; python_version >= "3.10" and python_version < "3.14" +secretstorage==3.3.3 ; python_version >= "3.8" and python_version < "3.14" and sys_platform == "linux" +selenium==4.25.0 ; python_version >= "3.8" and python_version < "3.14" +seletools==1.5.0 ; python_version >= "3.8" and python_version < "3.14" +setuptools==75.1.0 ; python_version >= "3.8" and python_version < "3.14" +six==1.16.0 ; python_version >= "3.8" and python_version < "3.14" +sniffio==1.3.1 ; python_version >= "3.8" and python_version < "3.14" +snowballstemmer==2.2.0 ; python_version >= "3.8" and python_version < "3.14" +sortedcontainers==2.4.0 ; python_version >= "3.8" and python_version < "3.14" +sphinx-rtd-theme==2.0.0 ; python_version >= "3.8" and python_version < "3.14" +sphinx==7.1.2 ; python_version >= "3.8" and python_version < "3.14" +sphinxcontrib-applehelp==1.0.4 ; python_version >= "3.8" and python_version < "3.14" +sphinxcontrib-devhelp==1.0.2 ; python_version >= "3.8" and python_version < "3.14" +sphinxcontrib-htmlhelp==2.0.1 ; python_version >= "3.8" and python_version < "3.14" +sphinxcontrib-jquery==4.1 ; python_version >= "3.8" and python_version < "3.14" +sphinxcontrib-jsmath==1.0.1 ; python_version >= "3.8" and python_version < "3.14" +sphinxcontrib-qthelp==1.0.3 ; python_version >= "3.8" and python_version < "3.14" +sphinxcontrib-serializinghtml==1.1.5 ; python_version >= "3.8" and python_version < "3.14" +statsd==4.0.1 ; python_version >= "3.8" and python_version < "3.14" +stevedore==5.3.0 ; python_version >= "3.9" and python_version < "3.14" +tabulate==0.9.0 ; python_version >= "3.9" and python_version < "3.14" +testfixtures==8.3.0 ; python_version >= "3.8" and python_version < "3.14" +text-unidecode==1.3 ; python_version >= "3.8" and python_version < "3.14" +tinydb==4.8.0 ; python_version >= "3.8" and python_version < "3.14" +toml==0.10.2 ; python_version >= "3.8" and python_version < "3.14" tomli==2.0.1 ; python_version >= "3.8" and python_full_version <= "3.11.0a6" -trio-websocket==0.11.1 ; python_version >= "3.8" and python_version < "3.13" -trio==0.26.2 ; python_version >= "3.8" and python_version < "3.13" -tuspy==1.0.3 ; python_version >= "3.8" and python_version < "3.13" -twill==3.2.5 ; python_version >= "3.8" and python_version < "3.13" -twine==5.1.1 ; python_version >= "3.8" and python_version < "3.13" -typing-extensions==4.12.2 ; python_version >= "3.8" and python_version < "3.13" -tzdata==2024.1 ; python_version >= "3.8" and python_version < "3.13" and sys_platform == "win32" -urllib3==1.26.20 ; python_version >= "3.8" and python_version < "3.13" -urllib3[socks]==1.26.20 ; python_version >= "3.8" and python_version < "3.13" -watchdog==4.0.2 ; python_version >= "3.8" and python_version < "3.13" -wcwidth==0.2.13 ; python_version >= "3.8" and python_version < "3.13" -websocket-client==1.8.0 ; python_version >= "3.8" and python_version < "3.13" -werkzeug==3.0.4 ; python_version >= "3.8" and python_version < "3.13" -wrapt==1.16.0 ; python_version >= "3.8" and python_version < "3.13" -wsproto==1.2.0 ; python_version >= "3.8" and python_version < "3.13" -yarl==1.11.1 ; python_version >= "3.8" and python_version < "3.13" -zipp==3.20.2 ; python_version >= "3.8" and python_version < "3.13" +trio-websocket==0.11.1 ; python_version >= "3.8" and python_version < "3.14" +trio==0.26.2 ; python_version >= "3.8" and python_version < "3.14" +tuspy==1.0.3 ; python_version >= "3.8" and python_version < "3.14" +twill==3.2.5 ; python_version >= "3.8" and python_version < "3.14" +twine==5.1.1 ; python_version >= "3.8" and python_version < "3.14" +typing-extensions==4.12.2 ; python_version >= "3.8" and python_version < "3.14" +tzdata==2024.1 ; python_version >= "3.8" and python_version < "3.14" and sys_platform == "win32" +urllib3==1.26.20 ; python_version >= "3.8" and python_version < "3.14" +urllib3[socks]==1.26.20 ; python_version >= "3.8" and python_version < "3.14" +watchdog==4.0.2 ; python_version >= "3.8" and python_version < "3.14" +wcwidth==0.2.13 ; python_version >= "3.8" and python_version < "3.14" +websocket-client==1.8.0 ; python_version >= "3.8" and python_version < "3.14" +werkzeug==3.0.4 ; python_version >= "3.8" and python_version < "3.14" +wrapt==1.16.0 ; python_version >= "3.8" and python_version < "3.14" +wsproto==1.2.0 ; python_version >= "3.8" and python_version < "3.14" +yarl==1.11.1 ; python_version >= "3.8" and python_version < "3.14" +zipp==3.20.2 ; python_version >= "3.8" and python_version < "3.14" diff --git a/lib/galaxy/dependencies/pinned-requirements.txt b/lib/galaxy/dependencies/pinned-requirements.txt index 518105f7c0ce..4ca3e741046b 100644 --- a/lib/galaxy/dependencies/pinned-requirements.txt +++ b/lib/galaxy/dependencies/pinned-requirements.txt @@ -1,219 +1,219 @@ --extra-index-url https://wheels.galaxyproject.org/simple -a2wsgi==1.10.7 ; python_version >= "3.8" and python_version < "3.13" -adal==1.2.7 ; python_version >= "3.8" and python_version < "3.13" -aiobotocore==2.15.1 ; python_version >= "3.8" and python_version < "3.13" -aiodataloader==0.4.0 ; python_version >= "3.8" and python_version < "3.13" -aiofiles==24.1.0 ; python_version >= "3.8" and python_version < "3.13" -aiohappyeyeballs==2.4.0 ; python_version >= "3.8" and python_version < "3.13" -aiohttp==3.10.5 ; python_version >= "3.8" and python_version < "3.13" -aioitertools==0.12.0 ; python_version >= "3.8" and python_version < "3.13" -aiosignal==1.3.1 ; python_version >= "3.8" and python_version < "3.13" -alembic==1.13.2 ; python_version >= "3.8" and python_version < "3.13" -amqp==5.2.0 ; python_version >= "3.8" and python_version < "3.13" -aniso8601==9.0.1 ; python_version >= "3.8" and python_version < "3.13" -annotated-types==0.7.0 ; python_version >= "3.8" and python_version < "3.13" -anyio==4.5.0 ; python_version >= "3.8" and python_version < "3.13" -apispec==6.6.1 ; python_version >= "3.8" and python_version < "3.13" -appdirs==1.4.4 ; python_version >= "3.8" and python_version < "3.13" -arcp==0.2.1 ; python_version >= "3.8" and python_version < "3.13" -argcomplete==3.5.0 ; python_version >= "3.8" and python_version < "3.13" +a2wsgi==1.10.7 ; python_version >= "3.8" and python_version < "3.14" +adal==1.2.7 ; python_version >= "3.8" and python_version < "3.14" +aiobotocore==2.15.1 ; python_version >= "3.8" and python_version < "3.14" +aiodataloader==0.4.0 ; python_version >= "3.8" and python_version < "3.14" +aiofiles==24.1.0 ; python_version >= "3.8" and python_version < "3.14" +aiohappyeyeballs==2.4.0 ; python_version >= "3.8" and python_version < "3.14" +aiohttp==3.10.5 ; python_version >= "3.8" and python_version < "3.14" +aioitertools==0.12.0 ; python_version >= "3.8" and python_version < "3.14" +aiosignal==1.3.1 ; python_version >= "3.8" and python_version < "3.14" +alembic==1.13.2 ; python_version >= "3.8" and python_version < "3.14" +amqp==5.2.0 ; python_version >= "3.8" and python_version < "3.14" +aniso8601==9.0.1 ; python_version >= "3.8" and python_version < "3.14" +annotated-types==0.7.0 ; python_version >= "3.8" and python_version < "3.14" +anyio==4.5.0 ; python_version >= "3.8" and python_version < "3.14" +apispec==6.6.1 ; python_version >= "3.8" and python_version < "3.14" +appdirs==1.4.4 ; python_version >= "3.8" and python_version < "3.14" +arcp==0.2.1 ; python_version >= "3.8" and python_version < "3.14" +argcomplete==3.5.0 ; python_version >= "3.8" and python_version < "3.14" async-timeout==4.0.3 ; python_version >= "3.8" and python_version < "3.11" -attmap==0.13.2 ; python_version >= "3.8" and python_version < "3.13" -attrs==24.2.0 ; python_version >= "3.8" and python_version < "3.13" -babel==2.16.0 ; python_version >= "3.8" and python_version < "3.13" +attmap==0.13.2 ; python_version >= "3.8" and python_version < "3.14" +attrs==24.2.0 ; python_version >= "3.8" and python_version < "3.14" +babel==2.16.0 ; python_version >= "3.8" and python_version < "3.14" backports-zoneinfo==0.2.1 ; python_version >= "3.8" and python_version < "3.9" backports-zoneinfo[tzdata]==0.2.1 ; python_version >= "3.8" and python_version < "3.9" -bagit-profile==1.3.1 ; python_version >= "3.8" and python_version < "3.13" -bagit==1.8.1 ; python_version >= "3.8" and python_version < "3.13" -bcrypt==4.2.0 ; python_version >= "3.8" and python_version < "3.13" -bdbag==1.7.3 ; python_version >= "3.8" and python_version < "3.13" -beaker==1.13.0 ; python_version >= "3.8" and python_version < "3.13" -billiard==4.2.0 ; python_version >= "3.8" and python_version < "3.13" -bioblend==1.3.0 ; python_version >= "3.8" and python_version < "3.13" -bleach==6.1.0 ; python_version >= "3.8" and python_version < "3.13" -boltons==24.0.0 ; python_version >= "3.8" and python_version < "3.13" -boto==2.49.0 ; python_version >= "3.8" and python_version < "3.13" -botocore==1.35.23 ; python_version >= "3.8" and python_version < "3.13" -bx-python==0.13.0 ; python_version >= "3.8" and python_version < "3.13" -cachecontrol[filecache]==0.14.0 ; python_version >= "3.8" and python_version < "3.13" -celery==5.4.0 ; python_version >= "3.8" and python_version < "3.13" -certifi==2024.8.30 ; python_version >= "3.8" and python_version < "3.13" -cffi==1.17.1 ; python_version >= "3.8" and python_version < "3.13" -charset-normalizer==3.3.2 ; python_version >= "3.8" and python_version < "3.13" -cheetah3==3.2.6.post1 ; python_version >= "3.8" and python_version < "3.13" -circus==0.18.0 ; python_version >= "3.8" and python_version < "3.13" -click-didyoumean==0.3.1 ; python_version >= "3.8" and python_version < "3.13" -click-plugins==1.1.1 ; python_version >= "3.8" and python_version < "3.13" -click-repl==0.3.0 ; python_version >= "3.8" and python_version < "3.13" -click==8.1.7 ; python_version >= "3.8" and python_version < "3.13" -cloudauthz==0.6.0 ; python_version >= "3.8" and python_version < "3.13" -cloudbridge==3.2.0 ; python_version >= "3.8" and python_version < "3.13" -colorama==0.4.6 ; python_version >= "3.8" and python_version < "3.13" and platform_system == "Windows" -coloredlogs==15.0.1 ; python_version >= "3.8" and python_version < "3.13" -conda-package-streaming==0.10.0 ; python_version >= "3.8" and python_version < "3.13" -cryptography==43.0.1 ; python_version >= "3.8" and python_version < "3.13" -cwl-upgrader==1.2.11 ; python_version >= "3.8" and python_version < "3.13" -cwl-utils==0.34 ; python_version >= "3.8" and python_version < "3.13" -cwltool==3.1.20240909164951 ; python_version >= "3.8" and python_version < "3.13" -defusedxml==0.7.1 ; python_version >= "3.8" and python_version < "3.13" -deprecation==2.1.0 ; python_version >= "3.8" and python_version < "3.13" -dictobj==0.4 ; python_version >= "3.8" and python_version < "3.13" -dnspython==2.6.1 ; python_version >= "3.8" and python_version < "3.13" -docopt==0.6.2 ; python_version >= "3.8" and python_version < "3.13" -docutils==0.20.1 ; python_version >= "3.8" and python_version < "3.13" -dparse==0.6.3 ; python_version >= "3.8" and python_version < "3.13" -edam-ontology==1.25.2 ; python_version >= "3.8" and python_version < "3.13" -email-validator==2.2.0 ; python_version >= "3.8" and python_version < "3.13" +bagit-profile==1.3.1 ; python_version >= "3.8" and python_version < "3.14" +bagit==1.8.1 ; python_version >= "3.8" and python_version < "3.14" +bcrypt==4.2.0 ; python_version >= "3.8" and python_version < "3.14" +bdbag==1.7.3 ; python_version >= "3.8" and python_version < "3.14" +beaker==1.13.0 ; python_version >= "3.8" and python_version < "3.14" +billiard==4.2.0 ; python_version >= "3.8" and python_version < "3.14" +bioblend==1.3.0 ; python_version >= "3.8" and python_version < "3.14" +bleach==6.1.0 ; python_version >= "3.8" and python_version < "3.14" +boltons==24.0.0 ; python_version >= "3.8" and python_version < "3.14" +boto==2.49.0 ; python_version >= "3.8" and python_version < "3.14" +botocore==1.35.23 ; python_version >= "3.8" and python_version < "3.14" +bx-python==0.13.0 ; python_version >= "3.8" and python_version < "3.14" +cachecontrol[filecache]==0.14.0 ; python_version >= "3.8" and python_version < "3.14" +celery==5.4.0 ; python_version >= "3.8" and python_version < "3.14" +certifi==2024.8.30 ; python_version >= "3.8" and python_version < "3.14" +cffi==1.17.1 ; python_version >= "3.8" and python_version < "3.14" +charset-normalizer==3.3.2 ; python_version >= "3.8" and python_version < "3.14" +cheetah3==3.2.6.post1 ; python_version >= "3.8" and python_version < "3.14" +circus==0.18.0 ; python_version >= "3.8" and python_version < "3.14" +click-didyoumean==0.3.1 ; python_version >= "3.8" and python_version < "3.14" +click-plugins==1.1.1 ; python_version >= "3.8" and python_version < "3.14" +click-repl==0.3.0 ; python_version >= "3.8" and python_version < "3.14" +click==8.1.7 ; python_version >= "3.8" and python_version < "3.14" +cloudauthz==0.6.0 ; python_version >= "3.8" and python_version < "3.14" +cloudbridge==3.2.0 ; python_version >= "3.8" and python_version < "3.14" +colorama==0.4.6 ; python_version >= "3.8" and python_version < "3.14" and platform_system == "Windows" +coloredlogs==15.0.1 ; python_version >= "3.8" and python_version < "3.14" +conda-package-streaming==0.10.0 ; python_version >= "3.8" and python_version < "3.14" +cryptography==43.0.1 ; python_version >= "3.8" and python_version < "3.14" +cwl-upgrader==1.2.11 ; python_version >= "3.8" and python_version < "3.14" +cwl-utils==0.34 ; python_version >= "3.8" and python_version < "3.14" +cwltool==3.1.20240909164951 ; python_version >= "3.8" and python_version < "3.14" +defusedxml==0.7.1 ; python_version >= "3.8" and python_version < "3.14" +deprecation==2.1.0 ; python_version >= "3.8" and python_version < "3.14" +dictobj==0.4 ; python_version >= "3.8" and python_version < "3.14" +dnspython==2.6.1 ; python_version >= "3.8" and python_version < "3.14" +docopt==0.6.2 ; python_version >= "3.8" and python_version < "3.14" +docutils==0.20.1 ; python_version >= "3.8" and python_version < "3.14" +dparse==0.6.3 ; python_version >= "3.8" and python_version < "3.14" +edam-ontology==1.25.2 ; python_version >= "3.8" and python_version < "3.14" +email-validator==2.2.0 ; python_version >= "3.8" and python_version < "3.14" exceptiongroup==1.2.2 ; python_version >= "3.8" and python_version < "3.11" -fastapi-slim==0.115.0 ; python_version >= "3.8" and python_version < "3.13" -filelock==3.16.1 ; python_version >= "3.8" and python_version < "3.13" -frozenlist==1.4.1 ; python_version >= "3.8" and python_version < "3.13" -fs==2.4.16 ; python_version >= "3.8" and python_version < "3.13" -fsspec==2024.9.0 ; python_version >= "3.8" and python_version < "3.13" -future==1.0.0 ; python_version >= "3.8" and python_version < "3.13" -galaxy-sequence-utils==1.1.5 ; python_version >= "3.8" and python_version < "3.13" -galaxy2cwl==0.1.4 ; python_version >= "3.8" and python_version < "3.13" -graphene-sqlalchemy==3.0.0rc1 ; python_version >= "3.8" and python_version < "3.13" -graphene==3.3 ; python_version >= "3.8" and python_version < "3.13" -graphql-core==3.2.4 ; python_version >= "3.8" and python_version < "3.13" -graphql-relay==3.2.0 ; python_version >= "3.8" and python_version < "3.13" -gravity==1.0.6 ; python_version >= "3.8" and python_version < "3.13" -greenlet==3.0.3 ; python_version < "3.13" and (platform_machine == "aarch64" or platform_machine == "ppc64le" or platform_machine == "x86_64" or platform_machine == "amd64" or platform_machine == "AMD64" or platform_machine == "win32" or platform_machine == "WIN32") and python_version >= "3.8" -gunicorn==23.0.0 ; python_version >= "3.8" and python_version < "3.13" -gxformat2==0.20.0 ; python_version >= "3.8" and python_version < "3.13" -h11==0.14.0 ; python_version >= "3.8" and python_version < "3.13" -h5grove==2.3.0 ; python_version >= "3.8" and python_version < "3.13" -h5py==3.11.0 ; python_version >= "3.8" and python_version < "3.13" -humanfriendly==10.0 ; python_version >= "3.8" and python_version < "3.13" -idna==3.10 ; python_version >= "3.8" and python_version < "3.13" -importlib-metadata==8.5.0 ; python_version >= "3.8" and python_version < "3.13" +fastapi-slim==0.115.0 ; python_version >= "3.8" and python_version < "3.14" +filelock==3.16.1 ; python_version >= "3.8" and python_version < "3.14" +frozenlist==1.4.1 ; python_version >= "3.8" and python_version < "3.14" +fs==2.4.16 ; python_version >= "3.8" and python_version < "3.14" +fsspec==2024.9.0 ; python_version >= "3.8" and python_version < "3.14" +future==1.0.0 ; python_version >= "3.8" and python_version < "3.14" +galaxy-sequence-utils==1.1.5 ; python_version >= "3.8" and python_version < "3.14" +galaxy2cwl==0.1.4 ; python_version >= "3.8" and python_version < "3.14" +graphene-sqlalchemy==3.0.0rc1 ; python_version >= "3.8" and python_version < "3.14" +graphene==3.3 ; python_version >= "3.8" and python_version < "3.14" +graphql-core==3.2.4 ; python_version >= "3.8" and python_version < "3.14" +graphql-relay==3.2.0 ; python_version >= "3.8" and python_version < "3.14" +gravity==1.0.6 ; python_version >= "3.8" and python_version < "3.14" +greenlet==3.0.3 ; python_version < "3.14" and (platform_machine == "aarch64" or platform_machine == "ppc64le" or platform_machine == "x86_64" or platform_machine == "amd64" or platform_machine == "AMD64" or platform_machine == "win32" or platform_machine == "WIN32") and python_version >= "3.8" +gunicorn==23.0.0 ; python_version >= "3.8" and python_version < "3.14" +gxformat2==0.20.0 ; python_version >= "3.8" and python_version < "3.14" +h11==0.14.0 ; python_version >= "3.8" and python_version < "3.14" +h5grove==2.3.0 ; python_version >= "3.8" and python_version < "3.14" +h5py==3.11.0 ; python_version >= "3.8" and python_version < "3.14" +humanfriendly==10.0 ; python_version >= "3.8" and python_version < "3.14" +idna==3.10 ; python_version >= "3.8" and python_version < "3.14" +importlib-metadata==8.5.0 ; python_version >= "3.8" and python_version < "3.14" importlib-resources==6.4.5 ; python_version >= "3.8" and python_version < "3.9" -isa-rwval @ git+https://github.com/nsoranzo/isa-rwval.git@3d989181058d2765a93cb0e7ca85d6955e0eb6ef ; python_version >= "3.8" and python_version < "3.13" -isal==1.7.0 ; python_version >= "3.8" and python_version < "3.13" -isodate==0.6.1 ; python_version >= "3.8" and python_version < "3.13" -jinja2==3.1.4 ; python_version >= "3.8" and python_version < "3.13" -jmespath==1.0.1 ; python_version >= "3.8" and python_version < "3.13" -jsonref==1.1.0 ; python_version >= "3.8" and python_version < "3.13" -jsonschema-specifications==2023.12.1 ; python_version >= "3.8" and python_version < "3.13" -jsonschema==4.23.0 ; python_version >= "3.8" and python_version < "3.13" -kombu==5.4.2 ; python_version >= "3.8" and python_version < "3.13" -lagom==2.6.0 ; python_version >= "3.8" and python_version < "3.13" -lxml==5.3.0 ; python_version >= "3.8" and python_version < "3.13" -mako==1.3.5 ; python_version >= "3.8" and python_version < "3.13" -markdown-it-py==3.0.0 ; python_version >= "3.8" and python_version < "3.13" -markdown==3.7 ; python_version >= "3.8" and python_version < "3.13" -markupsafe==2.1.5 ; python_version >= "3.8" and python_version < "3.13" -mdurl==0.1.2 ; python_version >= "3.8" and python_version < "3.13" -mercurial==6.8.1 ; python_version >= "3.8" and python_version < "3.13" -mistune==3.0.2 ; python_version >= "3.8" and python_version < "3.13" -mrcfile==1.5.3 ; python_version >= "3.8" and python_version < "3.13" -msal==1.31.0 ; python_version >= "3.8" and python_version < "3.13" -msgpack==1.1.0 ; python_version >= "3.8" and python_version < "3.13" -multidict==6.1.0 ; python_version >= "3.8" and python_version < "3.13" -mypy-extensions==1.0.0 ; python_version >= "3.8" and python_version < "3.13" -networkx==3.1 ; python_version >= "3.8" and python_version < "3.13" -nodeenv==1.9.1 ; python_version >= "3.8" and python_version < "3.13" +isa-rwval @ git+https://github.com/nsoranzo/isa-rwval.git@3d989181058d2765a93cb0e7ca85d6955e0eb6ef ; python_version >= "3.8" and python_version < "3.14" +isal==1.7.0 ; python_version >= "3.8" and python_version < "3.14" +isodate==0.6.1 ; python_version >= "3.8" and python_version < "3.14" +jinja2==3.1.4 ; python_version >= "3.8" and python_version < "3.14" +jmespath==1.0.1 ; python_version >= "3.8" and python_version < "3.14" +jsonref==1.1.0 ; python_version >= "3.8" and python_version < "3.14" +jsonschema-specifications==2023.12.1 ; python_version >= "3.8" and python_version < "3.14" +jsonschema==4.23.0 ; python_version >= "3.8" and python_version < "3.14" +kombu==5.4.2 ; python_version >= "3.8" and python_version < "3.14" +lagom==2.6.0 ; python_version >= "3.8" and python_version < "3.14" +lxml==5.3.0 ; python_version >= "3.8" and python_version < "3.14" +mako==1.3.5 ; python_version >= "3.8" and python_version < "3.14" +markdown-it-py==3.0.0 ; python_version >= "3.8" and python_version < "3.14" +markdown==3.7 ; python_version >= "3.8" and python_version < "3.14" +markupsafe==2.1.5 ; python_version >= "3.8" and python_version < "3.14" +mdurl==0.1.2 ; python_version >= "3.8" and python_version < "3.14" +mercurial==6.8.1 ; python_version >= "3.8" and python_version < "3.14" +mistune==3.0.2 ; python_version >= "3.8" and python_version < "3.14" +mrcfile==1.5.3 ; python_version >= "3.8" and python_version < "3.14" +msal==1.31.0 ; python_version >= "3.8" and python_version < "3.14" +msgpack==1.1.0 ; python_version >= "3.8" and python_version < "3.14" +multidict==6.1.0 ; python_version >= "3.8" and python_version < "3.14" +mypy-extensions==1.0.0 ; python_version >= "3.8" and python_version < "3.14" +networkx==3.1 ; python_version >= "3.8" and python_version < "3.14" +nodeenv==1.9.1 ; python_version >= "3.8" and python_version < "3.14" numpy==1.24.4 ; python_version >= "3.8" and python_version < "3.9" numpy==2.0.2 ; python_version >= "3.9" and python_version < "3.10" -numpy==2.1.1 ; python_version >= "3.10" and python_version < "3.13" -oauthlib==3.2.2 ; python_version >= "3.8" and python_version < "3.13" -orjson==3.10.7 ; python_version >= "3.8" and python_version < "3.13" -oyaml==1.0 ; python_version >= "3.8" and python_version < "3.13" -packaging==24.1 ; python_version >= "3.8" and python_version < "3.13" -paramiko==3.5.0 ; python_version >= "3.8" and python_version < "3.13" -parsley==1.3 ; python_version >= "3.8" and python_version < "3.13" -paste==3.10.1 ; python_version >= "3.8" and python_version < "3.13" -pastedeploy==3.1.0 ; python_version >= "3.8" and python_version < "3.13" -pebble==5.0.7 ; python_version >= "3.8" and python_version < "3.13" -pillow==10.4.0 ; python_version >= "3.8" and python_version < "3.13" +numpy==2.1.1 ; python_version >= "3.10" and python_version < "3.14" +oauthlib==3.2.2 ; python_version >= "3.8" and python_version < "3.14" +orjson==3.10.7 ; python_version >= "3.8" and python_version < "3.14" +oyaml==1.0 ; python_version >= "3.8" and python_version < "3.14" +packaging==24.1 ; python_version >= "3.8" and python_version < "3.14" +paramiko==3.5.0 ; python_version >= "3.8" and python_version < "3.14" +parsley==1.3 ; python_version >= "3.8" and python_version < "3.14" +paste==3.10.1 ; python_version >= "3.8" and python_version < "3.14" +pastedeploy==3.1.0 ; python_version >= "3.8" and python_version < "3.14" +pebble==5.0.7 ; python_version >= "3.8" and python_version < "3.14" +pillow==10.4.0 ; python_version >= "3.8" and python_version < "3.14" pkgutil-resolve-name==1.3.10 ; python_version >= "3.8" and python_version < "3.9" -promise==2.3 ; python_version >= "3.8" and python_version < "3.13" -prompt-toolkit==3.0.47 ; python_version >= "3.8" and python_version < "3.13" -prov==1.5.1 ; python_version >= "3.8" and python_version < "3.13" -psutil==6.0.0 ; python_version >= "3.8" and python_version < "3.13" -pulsar-galaxy-lib==0.15.6 ; python_version >= "3.8" and python_version < "3.13" -pycparser==2.22 ; python_version >= "3.8" and python_version < "3.13" -pycryptodome==3.20.0 ; python_version >= "3.8" and python_version < "3.13" -pydantic-core==2.23.4 ; python_version >= "3.8" and python_version < "3.13" -pydantic-tes==0.1.5 ; python_version >= "3.8" and python_version < "3.13" -pydantic==2.9.2 ; python_version >= "3.8" and python_version < "3.13" -pydantic[email]==2.9.2 ; python_version >= "3.8" and python_version < "3.13" -pydot==2.0.0 ; python_version >= "3.8" and python_version < "3.13" -pyeventsystem==0.1.0 ; python_version >= "3.8" and python_version < "3.13" -pyfaidx==0.8.1.2 ; python_version >= "3.8" and python_version < "3.13" -pygments==2.18.0 ; python_version >= "3.8" and python_version < "3.13" -pyjwt==2.9.0 ; python_version >= "3.8" and python_version < "3.13" -pyjwt[crypto]==2.9.0 ; python_version >= "3.8" and python_version < "3.13" -pykwalify==1.8.0 ; python_version >= "3.8" and python_version < "3.13" -pylibmagic==0.5.0 ; python_version >= "3.8" and python_version < "3.13" -pynacl==1.5.0 ; python_version >= "3.8" and python_version < "3.13" -pyparsing==3.1.4 ; python_version >= "3.8" and python_version < "3.13" -pyreadline3==3.5.4 ; sys_platform == "win32" and python_version >= "3.8" and python_version < "3.13" -pysam==0.22.1 ; python_version >= "3.8" and python_version < "3.13" -python-dateutil==2.9.0.post0 ; python_version >= "3.8" and python_version < "3.13" -python-magic==0.4.27 ; python_version >= "3.8" and python_version < "3.13" -python-multipart==0.0.9 ; python_version >= "3.8" and python_version < "3.13" -python3-openid==3.2.0 ; python_version >= "3.8" and python_version < "3.13" -pytz==2024.2 ; python_version >= "3.8" and python_version < "3.13" -pyyaml==6.0.2 ; python_version >= "3.8" and python_version < "3.13" -pyzmq==26.2.0 ; python_version >= "3.8" and python_version < "3.13" -rdflib==6.3.2 ; python_version >= "3.8" and python_version < "3.13" -referencing==0.35.1 ; python_version >= "3.8" and python_version < "3.13" -refgenconf==0.12.2 ; python_version >= "3.8" and python_version < "3.13" -regex==2024.9.11 ; python_version >= "3.8" and python_version < "3.13" -repoze-lru==0.7 ; python_version >= "3.8" and python_version < "3.13" -requests-oauthlib==2.0.0 ; python_version >= "3.8" and python_version < "3.13" -requests-toolbelt==1.0.0 ; python_version >= "3.8" and python_version < "3.13" -requests-unixsocket==0.3.0 ; python_version >= "3.8" and python_version < "3.13" -requests==2.32.3 ; python_version >= "3.8" and python_version < "3.13" -rich==13.8.1 ; python_version >= "3.8" and python_version < "3.13" -rocrate==0.11.0 ; python_version >= "3.8" and python_version < "3.13" -routes==2.5.1 ; python_version >= "3.8" and python_version < "3.13" -rpds-py==0.20.0 ; python_version >= "3.8" and python_version < "3.13" +promise==2.3 ; python_version >= "3.8" and python_version < "3.14" +prompt-toolkit==3.0.47 ; python_version >= "3.8" and python_version < "3.14" +prov==1.5.1 ; python_version >= "3.8" and python_version < "3.14" +psutil==6.0.0 ; python_version >= "3.8" and python_version < "3.14" +pulsar-galaxy-lib==0.15.6 ; python_version >= "3.8" and python_version < "3.14" +pycparser==2.22 ; python_version >= "3.8" and python_version < "3.14" +pycryptodome==3.20.0 ; python_version >= "3.8" and python_version < "3.14" +pydantic-core==2.23.4 ; python_version >= "3.8" and python_version < "3.14" +pydantic-tes==0.1.5 ; python_version >= "3.8" and python_version < "3.14" +pydantic==2.9.2 ; python_version >= "3.8" and python_version < "3.14" +pydantic[email]==2.9.2 ; python_version >= "3.8" and python_version < "3.14" +pydot==2.0.0 ; python_version >= "3.8" and python_version < "3.14" +pyeventsystem==0.1.0 ; python_version >= "3.8" and python_version < "3.14" +pyfaidx==0.8.1.2 ; python_version >= "3.8" and python_version < "3.14" +pygments==2.18.0 ; python_version >= "3.8" and python_version < "3.14" +pyjwt==2.9.0 ; python_version >= "3.8" and python_version < "3.14" +pyjwt[crypto]==2.9.0 ; python_version >= "3.8" and python_version < "3.14" +pykwalify==1.8.0 ; python_version >= "3.8" and python_version < "3.14" +pylibmagic==0.5.0 ; python_version >= "3.8" and python_version < "3.14" +pynacl==1.5.0 ; python_version >= "3.8" and python_version < "3.14" +pyparsing==3.1.4 ; python_version >= "3.8" and python_version < "3.14" +pyreadline3==3.5.4 ; sys_platform == "win32" and python_version >= "3.8" and python_version < "3.14" +pysam==0.22.1 ; python_version >= "3.8" and python_version < "3.14" +python-dateutil==2.9.0.post0 ; python_version >= "3.8" and python_version < "3.14" +python-magic==0.4.27 ; python_version >= "3.8" and python_version < "3.14" +python-multipart==0.0.9 ; python_version >= "3.8" and python_version < "3.14" +python3-openid==3.2.0 ; python_version >= "3.8" and python_version < "3.14" +pytz==2024.2 ; python_version >= "3.8" and python_version < "3.14" +pyyaml==6.0.2 ; python_version >= "3.8" and python_version < "3.14" +pyzmq==26.2.0 ; python_version >= "3.8" and python_version < "3.14" +rdflib==6.3.2 ; python_version >= "3.8" and python_version < "3.14" +referencing==0.35.1 ; python_version >= "3.8" and python_version < "3.14" +refgenconf==0.12.2 ; python_version >= "3.8" and python_version < "3.14" +regex==2024.9.11 ; python_version >= "3.8" and python_version < "3.14" +repoze-lru==0.7 ; python_version >= "3.8" and python_version < "3.14" +requests-oauthlib==2.0.0 ; python_version >= "3.8" and python_version < "3.14" +requests-toolbelt==1.0.0 ; python_version >= "3.8" and python_version < "3.14" +requests-unixsocket==0.3.0 ; python_version >= "3.8" and python_version < "3.14" +requests==2.32.3 ; python_version >= "3.8" and python_version < "3.14" +rich==13.8.1 ; python_version >= "3.8" and python_version < "3.14" +rocrate==0.11.0 ; python_version >= "3.8" and python_version < "3.14" +routes==2.5.1 ; python_version >= "3.8" and python_version < "3.14" +rpds-py==0.20.0 ; python_version >= "3.8" and python_version < "3.14" ruamel-yaml-clib==0.2.8 ; platform_python_implementation == "CPython" and python_version < "3.13" and python_version >= "3.8" -ruamel-yaml==0.18.6 ; python_version >= "3.8" and python_version < "3.13" -s3fs==2024.9.0 ; python_version >= "3.8" and python_version < "3.13" -schema-salad==8.7.20240905150001 ; python_version >= "3.8" and python_version < "3.13" -setuptools-scm==5.0.2 ; python_version >= "3.8" and python_version < "3.13" -setuptools==75.1.0 ; python_version >= "3.8" and python_version < "3.13" -shellescape==3.8.1 ; python_version >= "3.8" and python_version < "3.13" -six==1.16.0 ; python_version >= "3.8" and python_version < "3.13" -sniffio==1.3.1 ; python_version >= "3.8" and python_version < "3.13" -social-auth-core==4.5.4 ; python_version >= "3.8" and python_version < "3.13" -sortedcontainers==2.4.0 ; python_version >= "3.8" and python_version < "3.13" -spython==0.3.14 ; python_version >= "3.8" and python_version < "3.13" -sqlalchemy==2.0.35 ; python_version >= "3.8" and python_version < "3.13" -sqlitedict==2.1.0 ; python_version >= "3.8" and python_version < "3.13" -sqlparse==0.5.1 ; python_version >= "3.8" and python_version < "3.13" -starlette-context==0.3.6 ; python_version >= "3.8" and python_version < "3.13" -starlette-graphene3==0.6.0 ; python_version >= "3.8" and python_version < "3.13" -starlette==0.38.5 ; python_version >= "3.8" and python_version < "3.13" -supervisor==4.2.5 ; python_version >= "3.8" and python_version < "3.13" -svgwrite==1.4.3 ; python_version >= "3.8" and python_version < "3.13" -tenacity==9.0.0 ; python_version >= "3.8" and python_version < "3.13" -tifffile==2023.7.10 ; python_version >= "3.8" and python_version < "3.13" -tinydb==4.8.0 ; python_version >= "3.8" and python_version < "3.13" +ruamel-yaml==0.18.6 ; python_version >= "3.8" and python_version < "3.14" +s3fs==2024.9.0 ; python_version >= "3.8" and python_version < "3.14" +schema-salad==8.7.20240905150001 ; python_version >= "3.8" and python_version < "3.14" +setuptools-scm==5.0.2 ; python_version >= "3.8" and python_version < "3.14" +setuptools==75.1.0 ; python_version >= "3.8" and python_version < "3.14" +shellescape==3.8.1 ; python_version >= "3.8" and python_version < "3.14" +six==1.16.0 ; python_version >= "3.8" and python_version < "3.14" +sniffio==1.3.1 ; python_version >= "3.8" and python_version < "3.14" +social-auth-core==4.5.4 ; python_version >= "3.8" and python_version < "3.14" +sortedcontainers==2.4.0 ; python_version >= "3.8" and python_version < "3.14" +spython==0.3.14 ; python_version >= "3.8" and python_version < "3.14" +sqlalchemy==2.0.35 ; python_version >= "3.8" and python_version < "3.14" +sqlitedict==2.1.0 ; python_version >= "3.8" and python_version < "3.14" +sqlparse==0.5.1 ; python_version >= "3.8" and python_version < "3.14" +starlette-context==0.3.6 ; python_version >= "3.8" and python_version < "3.14" +starlette-graphene3==0.6.0 ; python_version >= "3.8" and python_version < "3.14" +starlette==0.38.5 ; python_version >= "3.8" and python_version < "3.14" +supervisor==4.2.5 ; python_version >= "3.8" and python_version < "3.14" +svgwrite==1.4.3 ; python_version >= "3.8" and python_version < "3.14" +tenacity==9.0.0 ; python_version >= "3.8" and python_version < "3.14" +tifffile==2023.7.10 ; python_version >= "3.8" and python_version < "3.14" +tinydb==4.8.0 ; python_version >= "3.8" and python_version < "3.14" tomli==2.0.1 ; python_version >= "3.8" and python_version < "3.11" -tornado==6.4.1 ; python_version >= "3.8" and python_version < "3.13" -tqdm==4.66.5 ; python_version >= "3.8" and python_version < "3.13" -tuspy==1.0.3 ; python_version >= "3.8" and python_version < "3.13" -tuswsgi==0.5.5 ; python_version >= "3.8" and python_version < "3.13" -typing-extensions==4.12.2 ; python_version >= "3.8" and python_version < "3.13" -tzdata==2024.1 ; python_version >= "3.8" and python_version < "3.13" -tzlocal==5.2 ; python_version >= "3.8" and python_version < "3.13" -ubiquerg==0.8.0 ; python_version >= "3.8" and python_version < "3.13" -urllib3==1.26.20 ; python_version >= "3.8" and python_version < "3.13" -uvicorn==0.30.6 ; python_version >= "3.8" and python_version < "3.13" -uvloop==0.20.0 ; python_version >= "3.8" and python_version < "3.13" -vine==5.1.0 ; python_version >= "3.8" and python_version < "3.13" -wcwidth==0.2.13 ; python_version >= "3.8" and python_version < "3.13" -webencodings==0.5.1 ; python_version >= "3.8" and python_version < "3.13" -webob==1.8.8 ; python_version >= "3.8" and python_version < "3.13" -whoosh==2.7.4 ; python_version >= "3.8" and python_version < "3.13" -wrapt==1.16.0 ; python_version >= "3.8" and python_version < "3.13" -yacman==0.9.3 ; python_version >= "3.8" and python_version < "3.13" -yarl==1.11.1 ; python_version >= "3.8" and python_version < "3.13" -zipp==3.20.2 ; python_version >= "3.8" and python_version < "3.13" -zipstream-new==1.1.8 ; python_version >= "3.8" and python_version < "3.13" -zstandard==0.23.0 ; python_version >= "3.8" and python_version < "3.13" +tornado==6.4.1 ; python_version >= "3.8" and python_version < "3.14" +tqdm==4.66.5 ; python_version >= "3.8" and python_version < "3.14" +tuspy==1.0.3 ; python_version >= "3.8" and python_version < "3.14" +tuswsgi==0.5.5 ; python_version >= "3.8" and python_version < "3.14" +typing-extensions==4.12.2 ; python_version >= "3.8" and python_version < "3.14" +tzdata==2024.1 ; python_version >= "3.8" and python_version < "3.14" +tzlocal==5.2 ; python_version >= "3.8" and python_version < "3.14" +ubiquerg==0.8.0 ; python_version >= "3.8" and python_version < "3.14" +urllib3==1.26.20 ; python_version >= "3.8" and python_version < "3.14" +uvicorn==0.30.6 ; python_version >= "3.8" and python_version < "3.14" +uvloop==0.20.0 ; python_version >= "3.8" and python_version < "3.14" +vine==5.1.0 ; python_version >= "3.8" and python_version < "3.14" +wcwidth==0.2.13 ; python_version >= "3.8" and python_version < "3.14" +webencodings==0.5.1 ; python_version >= "3.8" and python_version < "3.14" +webob==1.8.8 ; python_version >= "3.8" and python_version < "3.14" +whoosh==2.7.4 ; python_version >= "3.8" and python_version < "3.14" +wrapt==1.16.0 ; python_version >= "3.8" and python_version < "3.14" +yacman==0.9.3 ; python_version >= "3.8" and python_version < "3.14" +yarl==1.11.1 ; python_version >= "3.8" and python_version < "3.14" +zipp==3.20.2 ; python_version >= "3.8" and python_version < "3.14" +zipstream-new==1.1.8 ; python_version >= "3.8" and python_version < "3.14" +zstandard==0.23.0 ; python_version >= "3.8" and python_version < "3.14" diff --git a/lib/galaxy/dependencies/pinned-typecheck-requirements.txt b/lib/galaxy/dependencies/pinned-typecheck-requirements.txt index c23cbbbedc24..19bd98124139 100644 --- a/lib/galaxy/dependencies/pinned-typecheck-requirements.txt +++ b/lib/galaxy/dependencies/pinned-typecheck-requirements.txt @@ -1,30 +1,30 @@ -annotated-types==0.7.0 ; python_version >= "3.8" and python_version < "3.13" -boto3-stubs[s3]==1.35.24 ; python_version >= "3.8" and python_version < "3.13" -botocore-stubs==1.35.24 ; python_version >= "3.8" and python_version < "3.13" -cffi==1.17.1 ; python_version >= "3.8" and python_version < "3.13" and platform_python_implementation != "PyPy" -cryptography==43.0.1 ; python_version >= "3.8" and python_version < "3.13" -lxml-stubs==0.5.1 ; python_version >= "3.8" and python_version < "3.13" -mypy-boto3-s3==1.35.22 ; python_version >= "3.8" and python_version < "3.13" -mypy-extensions==1.0.0 ; python_version >= "3.8" and python_version < "3.13" -mypy==1.11.2 ; python_version >= "3.8" and python_version < "3.13" -pycparser==2.22 ; python_version >= "3.8" and python_version < "3.13" and platform_python_implementation != "PyPy" -pydantic-core==2.23.4 ; python_version >= "3.8" and python_version < "3.13" -pydantic==2.9.2 ; python_version >= "3.8" and python_version < "3.13" +annotated-types==0.7.0 ; python_version >= "3.8" and python_version < "3.14" +boto3-stubs[s3]==1.35.24 ; python_version >= "3.8" and python_version < "3.14" +botocore-stubs==1.35.24 ; python_version >= "3.8" and python_version < "3.14" +cffi==1.17.1 ; python_version >= "3.8" and python_version < "3.14" and platform_python_implementation != "PyPy" +cryptography==43.0.1 ; python_version >= "3.8" and python_version < "3.14" +lxml-stubs==0.5.1 ; python_version >= "3.8" and python_version < "3.14" +mypy-boto3-s3==1.35.22 ; python_version >= "3.8" and python_version < "3.14" +mypy-extensions==1.0.0 ; python_version >= "3.8" and python_version < "3.14" +mypy==1.11.2 ; python_version >= "3.8" and python_version < "3.14" +pycparser==2.22 ; python_version >= "3.8" and python_version < "3.14" and platform_python_implementation != "PyPy" +pydantic-core==2.23.4 ; python_version >= "3.8" and python_version < "3.14" +pydantic==2.9.2 ; python_version >= "3.8" and python_version < "3.14" tomli==2.0.1 ; python_version >= "3.8" and python_version < "3.11" -types-awscrt==0.21.5 ; python_version >= "3.8" and python_version < "3.13" -types-bleach==6.1.0.20240331 ; python_version >= "3.8" and python_version < "3.13" -types-boto==2.49.18.20240806 ; python_version >= "3.8" and python_version < "3.13" -types-contextvars==2.4.7.3 ; python_version >= "3.8" and python_version < "3.13" -types-dataclasses==0.6.6 ; python_version >= "3.8" and python_version < "3.13" -types-docutils==0.21.0.20240907 ; python_version >= "3.8" and python_version < "3.13" -types-html5lib==1.1.11.20240806 ; python_version >= "3.8" and python_version < "3.13" -types-markdown==3.7.0.20240822 ; python_version >= "3.8" and python_version < "3.13" -types-paramiko==3.5.0.20240918 ; python_version >= "3.8" and python_version < "3.13" -types-python-dateutil==2.9.0.20240906 ; python_version >= "3.8" and python_version < "3.13" -types-pyyaml==6.0.12.20240917 ; python_version >= "3.8" and python_version < "3.13" -types-requests==2.31.0.6 ; python_version >= "3.8" and python_version < "3.13" -types-s3transfer==0.10.2 ; python_version >= "3.8" and python_version < "3.13" -types-setuptools==75.1.0.20240917 ; python_version >= "3.8" and python_version < "3.13" -types-six==1.16.21.20240513 ; python_version >= "3.8" and python_version < "3.13" -types-urllib3==1.26.25.14 ; python_version >= "3.8" and python_version < "3.13" -typing-extensions==4.12.2 ; python_version >= "3.8" and python_version < "3.13" +types-awscrt==0.21.5 ; python_version >= "3.8" and python_version < "3.14" +types-bleach==6.1.0.20240331 ; python_version >= "3.8" and python_version < "3.14" +types-boto==2.49.18.20240806 ; python_version >= "3.8" and python_version < "3.14" +types-contextvars==2.4.7.3 ; python_version >= "3.8" and python_version < "3.14" +types-dataclasses==0.6.6 ; python_version >= "3.8" and python_version < "3.14" +types-docutils==0.21.0.20240907 ; python_version >= "3.8" and python_version < "3.14" +types-html5lib==1.1.11.20240806 ; python_version >= "3.8" and python_version < "3.14" +types-markdown==3.7.0.20240822 ; python_version >= "3.8" and python_version < "3.14" +types-paramiko==3.5.0.20240918 ; python_version >= "3.8" and python_version < "3.14" +types-python-dateutil==2.9.0.20240906 ; python_version >= "3.8" and python_version < "3.14" +types-pyyaml==6.0.12.20240917 ; python_version >= "3.8" and python_version < "3.14" +types-requests==2.31.0.6 ; python_version >= "3.8" and python_version < "3.14" +types-s3transfer==0.10.2 ; python_version >= "3.8" and python_version < "3.14" +types-setuptools==75.1.0.20240917 ; python_version >= "3.8" and python_version < "3.14" +types-six==1.16.21.20240513 ; python_version >= "3.8" and python_version < "3.14" +types-urllib3==1.26.25.14 ; python_version >= "3.8" and python_version < "3.14" +typing-extensions==4.12.2 ; python_version >= "3.8" and python_version < "3.14" diff --git a/lib/galaxy/dependencies/update.sh b/lib/galaxy/dependencies/update.sh index c7eee2328ad7..7162931dd290 100755 --- a/lib/galaxy/dependencies/update.sh +++ b/lib/galaxy/dependencies/update.sh @@ -6,8 +6,8 @@ set -e -SUPPORTED_PYTHON_VERSIONS="3.8 3.9 3.10 3.11 3.12" -NOT_SUPPORTED_NEXT_PYTHON_VERSION="3.13" +SUPPORTED_PYTHON_VERSIONS="3.8 3.9 3.10 3.11 3.12 3.13" +NOT_SUPPORTED_NEXT_PYTHON_VERSION="3.14" this_directory="$(cd "$(dirname "$0")" > /dev/null && pwd)"