diff --git a/packages/app/HISTORY.rst b/packages/app/HISTORY.rst index 4a5a215d4b38..dd897a8d6637 100644 --- a/packages/app/HISTORY.rst +++ b/packages/app/HISTORY.rst @@ -9,6 +9,12 @@ History +------------------- +23.1.3 (2023-12-01) +------------------- + +No recorded changes since last release + ------------------- 23.1.2 (2023-11-29) ------------------- @@ -42,6 +48,7 @@ Enhancements Bug fixes ========= +* * read job_conf directly from `config_dir` instead of computing it again from `config_file` by `@bernt-matthias `_ in `#15596 `_ * Fix some drs handling issues by `@nuwang `_ in `#15777 `_ * Fix filesource file url support by `@nuwang `_ in `#15794 `_ @@ -97,6 +104,7 @@ Bug fixes Enhancements ============ +* * Empower Users to Select Storage Destination by `@jmchilton `_ in `#14073 `_ * External Login Flow: Redirect users if account already exists by `@ahmedhamidawan `_ in `#15019 `_ * Add slack error reporting plugin by `@hexylena `_ in `#15025 `_ @@ -182,6 +190,7 @@ Other changes Bug fixes ========= +* * * Fix upload paramfile handling (for real user setups) by `@bernt-matthias `_ in `#16504 `_ * Fix extra files path handling by `@mvdbeek `_ in `#16541 `_ @@ -196,6 +205,7 @@ Bug fixes Enhancements ============ +* * * Update pulsar client library to 0.15.5 by `@mvdbeek `_ in `#16701 `_ @@ -208,6 +218,7 @@ Enhancements Bug fixes ========= +* * * * Skip installing npm/yarn if available, fix conditional dependency parsing, create virtualenv via conda when conda active by `@bernt-matthias `_ in `#16403 `_ @@ -226,6 +237,7 @@ Bug fixes * * * +* * Fix default when statement evaluation by `@mvdbeek `_ in `#16332 `_ * Redact private role name and description when purging user by `@mvdbeek `_ in `#16349 `_ @@ -242,12 +254,14 @@ Bug fixes * * * +* * Bump galaxy-release-util version to 0.1.2 by `@mvdbeek `_ in `#16241 `_ ============ Enhancements ============ +* * * * When importing tool data bundles, use the first loc file for the matching table by `@natefoo `_ in `#16247 `_ @@ -256,6 +270,7 @@ Enhancements Other changes ============= +* * * Forward port of slugify username received from oidc by `@nuwang `_ in `#16271 `_ @@ -273,6 +288,7 @@ Bug fixes * * * +* * Fix ``Text File Busy`` errors at the source by `@mvdbeek `_ in `#16212 `_ ============ @@ -284,6 +300,7 @@ Enhancements * * * +* * Point release deps fixes and docs by `@mvdbeek `_ in `#16214 `_ * Use galaxy-release-util to upload python packages by `@mvdbeek `_ in `#16240 `_ @@ -302,6 +319,7 @@ Bug fixes * * * +* * Display DCE in job parameter component, allow rerunning with DCE input by `@mvdbeek `_ in `#15744 `_ * Fix mixed outputs_to_working_directory pulsar destinations by `@mvdbeek `_ in `#15927 `_ * Update Gravity to 1.0.3 by `@natefoo `_ in `#15939 `_ @@ -330,6 +348,7 @@ Other changes * * * +* * Startup fix when tool removed between reboot by `@mvdbeek `_ in `#16175 `_ ------------------- diff --git a/packages/auth/HISTORY.rst b/packages/auth/HISTORY.rst index e38568036c5c..c6617d1013f3 100644 --- a/packages/auth/HISTORY.rst +++ b/packages/auth/HISTORY.rst @@ -9,6 +9,12 @@ History +------------------- +23.1.3 (2023-12-01) +------------------- + +No recorded changes since last release + ------------------- 23.1.2 (2023-11-29) ------------------- diff --git a/packages/config/HISTORY.rst b/packages/config/HISTORY.rst index e30122c53e8b..9ea11080187a 100644 --- a/packages/config/HISTORY.rst +++ b/packages/config/HISTORY.rst @@ -9,6 +9,12 @@ History +------------------- +23.1.3 (2023-12-01) +------------------- + +No recorded changes since last release + ------------------- 23.1.2 (2023-11-29) ------------------- @@ -36,6 +42,7 @@ Enhancements Bug fixes ========= +* * Fix some drs handling issues by `@nuwang `_ in `#15777 `_ * Improve container resolver documentation by `@mvdbeek `_ in `#16280 `_ * Limit tool document cache to tool configs with explicit cache path by `@mvdbeek `_ in `#16537 `_ @@ -46,6 +53,7 @@ Bug fixes Enhancements ============ +* * External Login Flow: Redirect users if account already exists by `@ahmedhamidawan `_ in `#15019 `_ * Add slack error reporting plugin by `@hexylena `_ in `#15025 `_ * Documents use of k8s_extra_job_envs in job_conf sample advanced by `@pcm32 `_ in `#15110 `_ @@ -89,6 +97,7 @@ No recorded changes since last release Bug fixes ========= +* * * Minor bug fix for default mail templates by `@neoformit `_ in `#16362 `_ @@ -122,12 +131,14 @@ Bug fixes * * * +* * Change default watchdog inotify_buffer log level to info by `@mvdbeek `_ in `#15967 `_ ============ Enhancements ============ +* * * Add ``ca_certs`` option for sentry client by `@mvdbeek `_ in `#15943 `_ diff --git a/packages/data/HISTORY.rst b/packages/data/HISTORY.rst index f6ef46b6b5cb..e5cca0597023 100644 --- a/packages/data/HISTORY.rst +++ b/packages/data/HISTORY.rst @@ -9,6 +9,17 @@ History +------------------- +23.1.3 (2023-12-01) +------------------- + + +========= +Bug fixes +========= + +* Add missing optional description field, fixes ephemeris data library example by `@mvdbeek `_ in `#17116 `_ + ------------------- 23.1.2 (2023-11-29) ------------------- @@ -41,6 +52,7 @@ Enhancements Bug fixes ========= +* * Fix bad auto-merge of dev. by `@jmchilton `_ in `#15386 `_ * Merge conflicting db migration branches into one by `@jdavcs `_ in `#15771 `_ * Enable ``strict_equality`` mypy option by `@nsoranzo `_ in `#15808 `_ @@ -71,6 +83,7 @@ Bug fixes Enhancements ============ +* * Empower Users to Select Storage Destination by `@jmchilton `_ in `#14073 `_ * Add Storage Dashboard visualizations for histories by `@davelopez `_ in `#14820 `_ * Towards decoupling datatypes and model by `@jdavcs `_ in `#15186 `_ @@ -129,6 +142,7 @@ Other changes Bug fixes ========= +* * * Fix extra files path handling by `@mvdbeek `_ in `#16541 `_ * Don't fail invocation message without dependent_workflow_step_id by `@mvdbeek `_ in `#16628 `_ @@ -142,6 +156,7 @@ Bug fixes Bug fixes ========= +* * * * Copy when_expression when copying workflow step by `@mvdbeek `_ in `#16377 `_ @@ -176,6 +191,7 @@ Bug fixes * * * +* * Display DCE in job parameter component, allow rerunning with DCE input by `@mvdbeek `_ in `#15744 `_ * Fix folder listing via file browser by `@mvdbeek `_ in `#15950 `_ * Fix RO-crate invocation export with complex collections by `@davelopez `_ in `#15971 `_ diff --git a/packages/files/HISTORY.rst b/packages/files/HISTORY.rst index 1f9f2776de2c..aa236acddde7 100644 --- a/packages/files/HISTORY.rst +++ b/packages/files/HISTORY.rst @@ -9,6 +9,12 @@ History +------------------- +23.1.3 (2023-12-01) +------------------- + +No recorded changes since last release + ------------------- 23.1.2 (2023-11-29) ------------------- @@ -29,6 +35,7 @@ Bug fixes Bug fixes ========= +* * Fix some drs handling issues by `@nuwang `_ in `#15777 `_ * Fix filesource file url support by `@nuwang `_ in `#15794 `_ * Fix unittest mocks to support us checking geturl() by `@dannon `_ in `#16726 `_ @@ -73,6 +80,7 @@ No recorded changes since last release Bug fixes ========= +* * * Fix dropbox import to support newer versions by `@nuwang `_ in `#16239 `_ diff --git a/packages/job_execution/HISTORY.rst b/packages/job_execution/HISTORY.rst index 524099ca36c7..6adaaabb43ef 100644 --- a/packages/job_execution/HISTORY.rst +++ b/packages/job_execution/HISTORY.rst @@ -9,6 +9,12 @@ History +------------------- +23.1.3 (2023-12-01) +------------------- + +No recorded changes since last release + ------------------- 23.1.2 (2023-11-29) ------------------- @@ -31,6 +37,7 @@ Bug fixes Bug fixes ========= +* * Fix tags ownership by `@davelopez `_ in `#16339 `_ * Push to object store even if ``set_meta`` fails by `@mvdbeek `_ in `#16667 `_ * Fix metadata setting in extended metadata + outputs_to_working_directory mode by `@mvdbeek `_ in `#16678 `_ @@ -59,6 +66,7 @@ Enhancements Bug fixes ========= +* * * Fix extra files path handling by `@mvdbeek `_ in `#16541 `_ * Make sure job_wrapper uses a consistent metadata strategy by `@mvdbeek `_ in `#16569 `_ diff --git a/packages/job_metrics/HISTORY.rst b/packages/job_metrics/HISTORY.rst index c816ac802f3a..cc7125246066 100644 --- a/packages/job_metrics/HISTORY.rst +++ b/packages/job_metrics/HISTORY.rst @@ -9,6 +9,12 @@ History +------------------- +23.1.3 (2023-12-01) +------------------- + +No recorded changes since last release + ------------------- 23.1.2 (2023-11-29) ------------------- diff --git a/packages/navigation/HISTORY.rst b/packages/navigation/HISTORY.rst index 7a6a13431864..672ae02f00ef 100644 --- a/packages/navigation/HISTORY.rst +++ b/packages/navigation/HISTORY.rst @@ -9,6 +9,12 @@ History +------------------- +23.1.3 (2023-12-01) +------------------- + +No recorded changes since last release + ------------------- 23.1.2 (2023-11-29) ------------------- diff --git a/packages/objectstore/HISTORY.rst b/packages/objectstore/HISTORY.rst index 30a0285570ea..203a2e3e7c3a 100644 --- a/packages/objectstore/HISTORY.rst +++ b/packages/objectstore/HISTORY.rst @@ -9,6 +9,12 @@ History +------------------- +23.1.3 (2023-12-01) +------------------- + +No recorded changes since last release + ------------------- 23.1.2 (2023-11-29) ------------------- @@ -55,6 +61,7 @@ Other changes Bug fixes ========= +* * * Fix extra files path handling by `@mvdbeek `_ in `#16541 `_ * Fixes for extra files handling and cached object stores by `@mvdbeek `_ in `#16595 `_ diff --git a/packages/selenium/HISTORY.rst b/packages/selenium/HISTORY.rst index 2eac260db1a9..56d242856cb5 100644 --- a/packages/selenium/HISTORY.rst +++ b/packages/selenium/HISTORY.rst @@ -9,6 +9,12 @@ History +------------------- +23.1.3 (2023-12-01) +------------------- + +No recorded changes since last release + ------------------- 23.1.2 (2023-11-29) ------------------- @@ -80,6 +86,7 @@ No recorded changes since last release Enhancements ============ +* * * Port selenium setup to non-deprecated selenium options by `@mvdbeek `_ in `#16215 `_ @@ -98,6 +105,7 @@ Enhancements * * * +* * Add support for launching workflows via Tutorial Mode by `@hexylena `_ in `#15684 `_ ------------------- diff --git a/packages/test_api/HISTORY.rst b/packages/test_api/HISTORY.rst index fd3a4be94a84..b039b8ef84c8 100644 --- a/packages/test_api/HISTORY.rst +++ b/packages/test_api/HISTORY.rst @@ -9,6 +9,12 @@ History +------------------- +23.1.3 (2023-12-01) +------------------- + +No recorded changes since last release + ------------------- 23.1.2 (2023-11-29) ------------------- @@ -36,6 +42,7 @@ Enhancements Bug fixes ========= +* * Ensure session is request-scoped for legacy endpoints by `@jdavcs `_ in `#16207 `_ * allow anon access for api/datasets/get_content_as_text by `@martenson `_ in `#16226 `_ * qualify querying for an api-key by `@martenson `_ in `#16320 `_ @@ -57,6 +64,7 @@ Bug fixes Enhancements ============ +* * Empower Users to Select Storage Destination by `@jmchilton `_ in `#14073 `_ * Outline Deployment Tests by `@jmchilton `_ in `#15420 `_ * Unify url handling with filesources by `@nuwang `_ in `#15497 `_ @@ -109,6 +117,7 @@ No recorded changes since last release Bug fixes ========= +* * * Display DCE in job parameter component, allow rerunning with DCE input by `@mvdbeek `_ in `#15744 `_ * Fix folder listing via file browser by `@mvdbeek `_ in `#15950 `_ @@ -120,6 +129,7 @@ Bug fixes Enhancements ============ +* * * Add support for launching workflows via Tutorial Mode by `@hexylena `_ in `#15684 `_ * Allow setting auto_decompress property in staging interface by `@mvdbeek `_ in `#16014 `_ diff --git a/packages/test_base/HISTORY.rst b/packages/test_base/HISTORY.rst index dc0b3af19235..b1107fdce834 100644 --- a/packages/test_base/HISTORY.rst +++ b/packages/test_base/HISTORY.rst @@ -9,6 +9,12 @@ History +------------------- +23.1.3 (2023-12-01) +------------------- + +No recorded changes since last release + ------------------- 23.1.2 (2023-11-29) ------------------- @@ -29,6 +35,7 @@ Bug fixes Bug fixes ========= +* * Ensure session is request-scoped for legacy endpoints by `@jdavcs `_ in `#16207 `_ ============ @@ -89,6 +96,7 @@ No recorded changes since last release Bug fixes ========= +* * * Ensure history export contains all expected datasets by `@davelopez `_ in `#16013 `_ * Fix extended metadata file size handling by `@mvdbeek `_ in `#16109 `_ diff --git a/packages/test_driver/HISTORY.rst b/packages/test_driver/HISTORY.rst index 200562d70615..3c9d91457c8d 100644 --- a/packages/test_driver/HISTORY.rst +++ b/packages/test_driver/HISTORY.rst @@ -9,6 +9,12 @@ History +------------------- +23.1.3 (2023-12-01) +------------------- + +No recorded changes since last release + ------------------- 23.1.2 (2023-11-29) ------------------- @@ -29,6 +35,7 @@ Bug fixes Bug fixes ========= +* * Backport tool mem fixes by `@mvdbeek `_ in `#16601 `_ * Fix allowlist deserialization in file sources by `@mvdbeek `_ in `#16729 `_ diff --git a/packages/tool_util/HISTORY.rst b/packages/tool_util/HISTORY.rst index 18fe7c462f3a..f01d88b40e5a 100644 --- a/packages/tool_util/HISTORY.rst +++ b/packages/tool_util/HISTORY.rst @@ -9,6 +9,12 @@ History +------------------- +23.1.3 (2023-12-01) +------------------- + +No recorded changes since last release + ------------------- 23.1.2 (2023-11-29) ------------------- @@ -37,6 +43,7 @@ Enhancements Bug fixes ========= +* * Fixes for two framework test tools by `@bernt-matthias `_ in `#15483 `_ * add missing f for f-string by `@bernt-matthias `_ in `#15584 `_ * Fix call to `docker_cached_container_description` by `@bernt-matthias `_ in `#15598 `_ @@ -58,6 +65,7 @@ Bug fixes Enhancements ============ +* * Decompress history data for testing assertions by `@bernt-matthias `_ in `#15085 `_ * OIDC tokens by `@SergeyYakubov `_ in `#15300 `_ * Fix for new style conda packages by `@bernt-matthias `_ in `#15446 `_ @@ -94,6 +102,7 @@ Other changes Bug fixes ========= +* * * Fixes for extra files handling and cached object stores by `@mvdbeek `_ in `#16595 `_ * Fix create/install commands for conda 23.9.0 by `@nsoranzo `_ in `#16831 `_ @@ -107,6 +116,7 @@ Bug fixes Bug fixes ========= +* * * * Allow duplicate labels in linter if outputs contain filters by `@bernt-matthias `_ in `#15933 `_ @@ -132,6 +142,7 @@ Bug fixes * * * +* * xsd: add missing `sep` attribute for `has_n_columns` by `@bernt-matthias `_ in `#16262 `_ * Missing init prevents models.py being bundled into tool_util by `@nuwang `_ in `#16308 `_ @@ -139,6 +150,7 @@ Bug fixes Enhancements ============ +* * * When importing tool data bundles, use the first loc file for the matching table by `@natefoo `_ in `#16247 `_ @@ -156,6 +168,7 @@ Bug fixes * * * +* * Don't fail CWL tool parsing when Cheetah not installed by `@mvdbeek `_ in `#16219 `_ * Allow skipping ``expect_num_outputs`` when ``expect_failure`` is set in tool test by `@bernt-matthias `_ in `#16237 `_ @@ -174,6 +187,7 @@ Bug fixes * * * +* * Fix assertion linting to not fail on byte suffixes by `@bernt-matthias `_ in `#15873 `_ * Fix ``get_test_from_anaconda()`` and ``base_image_for_targets()`` functions by `@nsoranzo `_ in `#16125 `_ * Fix test search for mulled container hashes by `@mvdbeek `_ in `#16170 `_ @@ -187,6 +201,7 @@ Enhancements * * * +* * Allow setting auto_decompress property in staging interface by `@mvdbeek `_ in `#16014 `_ ------------------- diff --git a/packages/tours/HISTORY.rst b/packages/tours/HISTORY.rst index 4b59c0591e16..d662b6506f4e 100644 --- a/packages/tours/HISTORY.rst +++ b/packages/tours/HISTORY.rst @@ -9,6 +9,12 @@ History +------------------- +23.1.3 (2023-12-01) +------------------- + +No recorded changes since last release + ------------------- 23.1.2 (2023-11-29) ------------------- diff --git a/packages/util/HISTORY.rst b/packages/util/HISTORY.rst index 6023cd1e56a2..ac73e65c08d1 100644 --- a/packages/util/HISTORY.rst +++ b/packages/util/HISTORY.rst @@ -9,6 +9,12 @@ History +------------------- +23.1.3 (2023-12-01) +------------------- + +No recorded changes since last release + ------------------- 23.1.2 (2023-11-29) ------------------- @@ -43,6 +49,7 @@ Bug fixes Enhancements ============ +* * Various Tool Shed Cleanup by `@jmchilton `_ in `#15247 `_ * Protection against problematic boolean parameters. by `@jmchilton `_ in `#15493 `_ * Unify url handling with filesources by `@nuwang `_ in `#15497 `_ @@ -94,6 +101,7 @@ No recorded changes since last release Bug fixes ========= +* * * Replace httpbin service with pytest-httpserver by `@mvdbeek `_ in `#16042 `_ diff --git a/packages/web_apps/HISTORY.rst b/packages/web_apps/HISTORY.rst index f38394fb0a0f..8123d9c39b3f 100644 --- a/packages/web_apps/HISTORY.rst +++ b/packages/web_apps/HISTORY.rst @@ -9,6 +9,17 @@ History +------------------- +23.1.3 (2023-12-01) +------------------- + + +========= +Bug fixes +========= + +* Add missing optional description field, fixes ephemeris data library example by `@mvdbeek `_ in `#17116 `_ + ------------------- 23.1.2 (2023-11-29) ------------------- @@ -36,6 +47,7 @@ Enhancements Bug fixes ========= +* * Create ToolSuccess route and refactor component by `@ahmedhamidawan `_ in `#15484 `_ * fix premature return in user API by `@martenson `_ in `#15781 `_ * Ensure session is request-scoped for legacy endpoints by `@jdavcs `_ in `#16207 `_ @@ -56,6 +68,7 @@ Bug fixes Enhancements ============ +* * Empower Users to Select Storage Destination by `@jmchilton `_ in `#14073 `_ * Add Storage Dashboard visualizations for histories by `@davelopez `_ in `#14820 `_ * External Login Flow: Redirect users if account already exists by `@ahmedhamidawan `_ in `#15019 `_ @@ -113,6 +126,7 @@ Other changes Bug fixes ========= +* * * Fix incorrect ASGI request host by `@davelopez `_ in `#16574 `_ * Allow the legacy DELETE dataset endpoint to accept any string for the history_id by `@assuntad23 `_ in `#16593 `_ @@ -126,6 +140,7 @@ Bug fixes Bug fixes ========= +* * * * Fix active step display in workflow editor side panel by `@mvdbeek `_ in `#16364 `_ @@ -142,6 +157,7 @@ Bug fixes * * * +* * Fix folder access for anonymous user by `@mvdbeek `_ in `#16330 `_ ------------------- @@ -157,12 +173,14 @@ Bug fixes * * * +* * Fix converting Enum value to str for Python 3.11 by `@nsoranzo `_ in `#16284 `_ ============ Enhancements ============ +* * * When importing tool data bundles, use the first loc file for the matching table by `@natefoo `_ in `#16247 `_ @@ -186,6 +204,7 @@ Bug fixes * * * +* * Display DCE in job parameter component, allow rerunning with DCE input by `@mvdbeek `_ in `#15744 `_ * Various fixes to path prefix handling by `@mvdbeek `_ in `#16033 `_ * Fix dataype_change not updating HDCA update_time by `@mvdbeek `_ in `#16099 `_ diff --git a/packages/web_framework/HISTORY.rst b/packages/web_framework/HISTORY.rst index 55e55fdb2a2d..3a0fa6f0dabc 100644 --- a/packages/web_framework/HISTORY.rst +++ b/packages/web_framework/HISTORY.rst @@ -9,6 +9,12 @@ History +------------------- +23.1.3 (2023-12-01) +------------------- + +No recorded changes since last release + ------------------- 23.1.2 (2023-11-29) ------------------- @@ -35,6 +41,7 @@ Enhancements Bug fixes ========= +* * Fix some drs handling issues by `@nuwang `_ in `#15777 `_ * Ensure session is request-scoped for legacy endpoints by `@jdavcs `_ in `#16207 `_ @@ -42,6 +49,7 @@ Bug fixes Enhancements ============ +* * Update Python dependencies by `@galaxybot `_ in `#15435 `_ * Don't error on missing parameters or unused parameters in UI controllers by `@mvdbeek `_ in `#16246 `_ @@ -54,6 +62,7 @@ Enhancements Bug fixes ========= +* * * Don't read request body into memory by `@mvdbeek `_ in `#16585 `_ @@ -66,6 +75,7 @@ Bug fixes Bug fixes ========= +* * * * Media player fix issue 16415 by `@bdwheele `_ in `#16443 `_ @@ -101,6 +111,7 @@ Bug fixes * * * +* * Various fixes to path prefix handling by `@mvdbeek `_ in `#16033 `_ ------------------- diff --git a/packages/web_stack/HISTORY.rst b/packages/web_stack/HISTORY.rst index 3ef19afda78b..5c8254900196 100644 --- a/packages/web_stack/HISTORY.rst +++ b/packages/web_stack/HISTORY.rst @@ -9,6 +9,12 @@ History +------------------- +23.1.3 (2023-12-01) +------------------- + +No recorded changes since last release + ------------------- 23.1.2 (2023-11-29) ------------------- @@ -55,6 +61,7 @@ No recorded changes since last release Bug fixes ========= +* * * Don't attempt to call a bool when using mem-self handler assignment. by `@natefoo `_ in `#16359 `_