From 2988127158d402de70f757aaa7c0fea807bff1ec Mon Sep 17 00:00:00 2001 From: Nicola Soranzo Date: Mon, 17 Oct 2022 01:21:12 +0100 Subject: [PATCH] Update GitHub action versions --- .github/workflows/api.yaml | 4 ++-- .github/workflows/converter_tests.yaml | 2 +- .github/workflows/cwl_conformance.yaml | 4 ++-- .github/workflows/db_indexes.yaml | 2 +- .github/workflows/dependencies.yaml | 2 +- .github/workflows/docs.yaml | 2 +- .github/workflows/first_startup.yaml | 2 +- .github/workflows/framework.yaml | 4 ++-- .github/workflows/integration.yaml | 4 ++-- .github/workflows/integration_selenium.yaml | 4 ++-- .github/workflows/lint.yaml | 4 ++-- .github/workflows/mulled.yaml | 2 +- .github/workflows/performance.yaml | 2 +- .github/workflows/reports_startup.yaml | 2 +- .github/workflows/selenium.yaml | 4 ++-- .github/workflows/test_galaxy_packages.yaml | 2 +- .github/workflows/toolshed.yaml | 2 +- .github/workflows/unit-postgres.yaml | 2 +- .github/workflows/unit.yaml | 4 ++-- 19 files changed, 27 insertions(+), 27 deletions(-) diff --git a/.github/workflows/api.yaml b/.github/workflows/api.yaml index c19722aa6dc1..87282592074e 100644 --- a/.github/workflows/api.yaml +++ b/.github/workflows/api.yaml @@ -47,7 +47,7 @@ jobs: - uses: actions/checkout@v3 with: path: 'galaxy root' - - uses: actions/setup-python@v3 + - uses: actions/setup-python@v4 with: python-version: ${{ matrix.python-version }} - name: Get full Python version @@ -67,7 +67,7 @@ jobs: - name: Run tests run: ./run_tests.sh --coverage --skip_flakey_fails -api lib/galaxy_test/api -- --num-shards=2 --shard-id=${{ matrix.chunk }} working-directory: 'galaxy root' - - uses: codecov/codecov-action@v2 + - uses: codecov/codecov-action@v3 with: flags: api working-directory: 'galaxy root' diff --git a/.github/workflows/converter_tests.yaml b/.github/workflows/converter_tests.yaml index 028dc7a58579..df26e3cb32c9 100644 --- a/.github/workflows/converter_tests.yaml +++ b/.github/workflows/converter_tests.yaml @@ -36,7 +36,7 @@ jobs: with: repository: galaxyproject/galaxy-test-data path: galaxy-test-data - - uses: actions/setup-python@v3 + - uses: actions/setup-python@v4 with: python-version: ${{ matrix.python-version }} - name: Cache venv dir diff --git a/.github/workflows/cwl_conformance.yaml b/.github/workflows/cwl_conformance.yaml index d984ac2057ca..17d845539e59 100644 --- a/.github/workflows/cwl_conformance.yaml +++ b/.github/workflows/cwl_conformance.yaml @@ -38,7 +38,7 @@ jobs: - uses: actions/checkout@v3 with: path: 'galaxy root' - - uses: actions/setup-python@v3 + - uses: actions/setup-python@v4 with: python-version: ${{ matrix.python-version }} - name: Get full Python version @@ -58,7 +58,7 @@ jobs: - name: Run tests run: ./run_tests.sh --coverage --skip_flakey_fails -cwl lib/galaxy_test/api/cwl -- -m "${{ matrix.marker }} and ${{ matrix.conformance-version }}" working-directory: 'galaxy root' - - uses: codecov/codecov-action@v2 + - uses: codecov/codecov-action@v3 with: flags: cwl-conformance working-directory: 'galaxy root' diff --git a/.github/workflows/db_indexes.yaml b/.github/workflows/db_indexes.yaml index 100f6acc2b80..42d70717eb2d 100644 --- a/.github/workflows/db_indexes.yaml +++ b/.github/workflows/db_indexes.yaml @@ -41,7 +41,7 @@ jobs: - uses: actions/checkout@v3 with: path: 'galaxy root' - - uses: actions/setup-python@v3 + - uses: actions/setup-python@v4 with: python-version: ${{ matrix.python-version }} - name: Get full Python version diff --git a/.github/workflows/dependencies.yaml b/.github/workflows/dependencies.yaml index f750d802b1ea..7d98dfaa1014 100644 --- a/.github/workflows/dependencies.yaml +++ b/.github/workflows/dependencies.yaml @@ -12,7 +12,7 @@ jobs: python-version: ['3.7'] steps: - uses: actions/checkout@v3 - - uses: actions/setup-python@v3 + - uses: actions/setup-python@v4 with: python-version: ${{ matrix.python-version }} - name: Cache pip dir diff --git a/.github/workflows/docs.yaml b/.github/workflows/docs.yaml index a8a857a370ee..6de9bf997964 100644 --- a/.github/workflows/docs.yaml +++ b/.github/workflows/docs.yaml @@ -29,7 +29,7 @@ jobs: - uses: actions/checkout@v3 with: fetch-depth: 0 - - uses: actions/setup-python@v3 + - uses: actions/setup-python@v4 with: python-version: ${{ matrix.python-version }} - name: Cache pip dir diff --git a/.github/workflows/first_startup.yaml b/.github/workflows/first_startup.yaml index fec281aa9440..3ee628e65e11 100644 --- a/.github/workflows/first_startup.yaml +++ b/.github/workflows/first_startup.yaml @@ -30,7 +30,7 @@ jobs: with: path: 'galaxy root' - name: Set up Python - uses: actions/setup-python@v3 + uses: actions/setup-python@v4 with: python-version: ${{ matrix.python-version }} - name: Get full Python version diff --git a/.github/workflows/framework.yaml b/.github/workflows/framework.yaml index ab81466cb622..989d92a1310c 100644 --- a/.github/workflows/framework.yaml +++ b/.github/workflows/framework.yaml @@ -43,7 +43,7 @@ jobs: - uses: actions/checkout@v3 with: path: 'galaxy root' - - uses: actions/setup-python@v3 + - uses: actions/setup-python@v4 with: python-version: ${{ matrix.python-version }} - name: Get full Python version @@ -63,7 +63,7 @@ jobs: - name: Run tests run: ./run_tests.sh --coverage --framework working-directory: 'galaxy root' - - uses: codecov/codecov-action@v2 + - uses: codecov/codecov-action@v3 with: flags: framework working-directory: 'galaxy root' diff --git a/.github/workflows/integration.yaml b/.github/workflows/integration.yaml index c1185cc36b30..62853a4cc52d 100644 --- a/.github/workflows/integration.yaml +++ b/.github/workflows/integration.yaml @@ -67,7 +67,7 @@ jobs: - uses: actions/checkout@v3 with: path: 'galaxy root' - - uses: actions/setup-python@v3 + - uses: actions/setup-python@v4 with: python-version: ${{ matrix.python-version }} - name: Get full Python version @@ -92,7 +92,7 @@ jobs: . .ci/minikube-test-setup/start_services.sh ./run_tests.sh --coverage -integration test/integration -- --num-shards=4 --shard-id=${{ matrix.chunk }} working-directory: 'galaxy root' - - uses: codecov/codecov-action@v2 + - uses: codecov/codecov-action@v3 with: flags: integration working-directory: 'galaxy root' diff --git a/.github/workflows/integration_selenium.yaml b/.github/workflows/integration_selenium.yaml index 8e73ba98f2b0..f705dc5907f6 100644 --- a/.github/workflows/integration_selenium.yaml +++ b/.github/workflows/integration_selenium.yaml @@ -46,7 +46,7 @@ jobs: - uses: actions/checkout@v3 with: path: 'galaxy root' - - uses: actions/setup-python@v3 + - uses: actions/setup-python@v4 with: python-version: ${{ matrix.python-version }} - name: Get full Python version @@ -70,7 +70,7 @@ jobs: - name: Run tests run: ./run_tests.sh --coverage -integration test/integration_selenium working-directory: 'galaxy root' - - uses: codecov/codecov-action@v2 + - uses: codecov/codecov-action@v3 with: flags: integration-selenium working-directory: 'galaxy root' diff --git a/.github/workflows/lint.yaml b/.github/workflows/lint.yaml index b778a2d02eea..5edd73281091 100644 --- a/.github/workflows/lint.yaml +++ b/.github/workflows/lint.yaml @@ -24,7 +24,7 @@ jobs: python-version: ['3.7', '3.10'] steps: - uses: actions/checkout@v3 - - uses: actions/setup-python@v3 + - uses: actions/setup-python@v4 with: python-version: ${{ matrix.python-version }} - name: Get full Python version @@ -50,4 +50,4 @@ jobs: - name: Run mypy checks run: tox -e mypy - uses: psf/black@stable - - uses: jamescurtin/isort-action@master + - uses: isort/isort-action@master diff --git a/.github/workflows/mulled.yaml b/.github/workflows/mulled.yaml index 9218e633e162..2059eaa4f902 100644 --- a/.github/workflows/mulled.yaml +++ b/.github/workflows/mulled.yaml @@ -24,7 +24,7 @@ jobs: - uses: actions/checkout@v3 with: path: 'galaxy root' - - uses: actions/setup-python@v3 + - uses: actions/setup-python@v4 with: python-version: ${{ matrix.python-version }} - name: Get full Python version diff --git a/.github/workflows/performance.yaml b/.github/workflows/performance.yaml index c36c5d168f6d..c3f1264a60a8 100644 --- a/.github/workflows/performance.yaml +++ b/.github/workflows/performance.yaml @@ -42,7 +42,7 @@ jobs: - uses: actions/checkout@v3 with: path: 'galaxy root' - - uses: actions/setup-python@v3 + - uses: actions/setup-python@v4 with: python-version: ${{ matrix.python-version }} - name: Get full Python version diff --git a/.github/workflows/reports_startup.yaml b/.github/workflows/reports_startup.yaml index ab7af7e2644a..8f610ef09317 100644 --- a/.github/workflows/reports_startup.yaml +++ b/.github/workflows/reports_startup.yaml @@ -27,7 +27,7 @@ jobs: with: path: 'galaxy root' - name: Set up Python - uses: actions/setup-python@v3 + uses: actions/setup-python@v4 with: python-version: ${{ matrix.python-version }} - name: Get full Python version diff --git a/.github/workflows/selenium.yaml b/.github/workflows/selenium.yaml index 5f9761030018..36c14ece8c95 100644 --- a/.github/workflows/selenium.yaml +++ b/.github/workflows/selenium.yaml @@ -46,7 +46,7 @@ jobs: - uses: actions/checkout@v3 with: path: 'galaxy root' - - uses: actions/setup-python@v3 + - uses: actions/setup-python@v4 with: python-version: ${{ matrix.python-version }} - name: Get full Python version @@ -70,7 +70,7 @@ jobs: - name: Run tests run: ./run_tests.sh --coverage -selenium lib/galaxy_test/selenium -- --num-shards=3 --shard-id=${{ matrix.chunk }} working-directory: 'galaxy root' - - uses: codecov/codecov-action@v2 + - uses: codecov/codecov-action@v3 with: flags: selenium working-directory: 'galaxy root' diff --git a/.github/workflows/test_galaxy_packages.yaml b/.github/workflows/test_galaxy_packages.yaml index 716b3bb82f60..0f18a52f1bea 100644 --- a/.github/workflows/test_galaxy_packages.yaml +++ b/.github/workflows/test_galaxy_packages.yaml @@ -23,7 +23,7 @@ jobs: - uses: actions/checkout@v3 with: path: 'galaxy root' - - uses: actions/setup-python@v3 + - uses: actions/setup-python@v4 with: python-version: ${{ matrix.python-version }} - name: Cache pip dir diff --git a/.github/workflows/toolshed.yaml b/.github/workflows/toolshed.yaml index 6ac71d5f4a40..ba51f80743c2 100644 --- a/.github/workflows/toolshed.yaml +++ b/.github/workflows/toolshed.yaml @@ -34,7 +34,7 @@ jobs: - uses: actions/checkout@v3 with: path: 'galaxy root' - - uses: actions/setup-python@v3 + - uses: actions/setup-python@v4 with: python-version: ${{ matrix.python-version }} - name: Get full Python version diff --git a/.github/workflows/unit-postgres.yaml b/.github/workflows/unit-postgres.yaml index d2807b2f08fa..0e415a2ffbda 100644 --- a/.github/workflows/unit-postgres.yaml +++ b/.github/workflows/unit-postgres.yaml @@ -36,7 +36,7 @@ jobs: - uses: actions/checkout@v3 with: path: 'galaxy root' - - uses: actions/setup-python@v3 + - uses: actions/setup-python@v4 with: python-version: ${{ matrix.python-version }} - name: Get full Python version diff --git a/.github/workflows/unit.yaml b/.github/workflows/unit.yaml index 8891e11cb9fc..85ab46ff65c7 100644 --- a/.github/workflows/unit.yaml +++ b/.github/workflows/unit.yaml @@ -25,7 +25,7 @@ jobs: - uses: actions/checkout@v3 with: path: 'galaxy root' - - uses: actions/setup-python@v3 + - uses: actions/setup-python@v4 with: python-version: ${{ matrix.python-version }} - name: Get full Python version @@ -47,7 +47,7 @@ jobs: - name: Run tests run: ./run_tests.sh --coverage -u working-directory: 'galaxy root' - - uses: codecov/codecov-action@v2 + - uses: codecov/codecov-action@v3 with: flags: py-unit working-directory: 'galaxy root'