This repository has been archived by the owner on Dec 16, 2022. It is now read-only.
-
Notifications
You must be signed in to change notification settings - Fork 0
/
publication.html
executable file
·237 lines (208 loc) · 14.9 KB
/
publication.html
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
71
72
73
74
75
76
77
78
79
80
81
82
83
84
85
86
87
88
89
90
91
92
93
94
95
96
97
98
99
100
101
102
103
104
105
106
107
108
109
110
111
112
113
114
115
116
117
118
119
120
121
122
123
124
125
126
127
128
129
130
131
132
133
134
135
136
137
138
139
140
141
142
143
144
145
146
147
148
149
150
151
152
153
154
155
156
157
158
159
160
161
162
163
164
165
166
167
168
169
170
171
172
173
174
175
176
177
178
179
180
181
182
183
184
185
186
187
188
189
190
191
192
193
194
195
196
197
198
199
200
201
202
203
204
205
206
207
208
209
210
211
212
213
214
215
216
217
218
219
220
221
222
223
224
225
226
227
228
229
230
231
232
233
234
235
236
237
<!DOCTYPE html>
<html >
<head>
<!-- Site made with Mobirise Website Builder v5.6.8, https://mobirise.com -->
<meta charset="UTF-8">
<meta http-equiv="X-UA-Compatible" content="IE=edge">
<meta name="generator" content="Mobirise v5.6.8, mobirise.com">
<meta name="twitter:card" content="summary_large_image"/>
<meta name="twitter:image:src" content="">
<meta property="og:image" content="">
<meta name="twitter:title" content="Publications">
<meta name="viewport" content="width=device-width, initial-scale=1, minimum-scale=1">
<link rel="shortcut icon" href="assets/images/crg-logo.png" type="image/x-icon">
<meta name="description" content="Website Creator Description">
<title>Publications</title>
<link rel="stylesheet" href="assets/web/assets/mobirise-icons2/mobirise2.css">
<link rel="stylesheet" href="assets/web/assets/mobirise-icons/mobirise-icons.css">
<link rel="stylesheet" href="assets/bootstrap/css/bootstrap.min.css">
<link rel="stylesheet" href="assets/bootstrap/css/bootstrap-grid.min.css">
<link rel="stylesheet" href="assets/bootstrap/css/bootstrap-reboot.min.css">
<link rel="stylesheet" href="assets/tether/tether.min.css">
<link rel="stylesheet" href="assets/dropdown/css/style.css">
<link rel="stylesheet" href="assets/theme/css/style.css">
<link rel="preload" href="https://fonts.googleapis.com/css?family=Rubik:300,300i,400,400i,500,500i,700,700i,900,900i&display=swap" as="style" onload="this.onload=null;this.rel='stylesheet'">
<noscript><link rel="stylesheet" href="https://fonts.googleapis.com/css?family=Rubik:300,300i,400,400i,500,500i,700,700i,900,900i&display=swap"></noscript>
<link rel="preload" as="style" href="assets/mobirise/css/mbr-additional.css"><link rel="stylesheet" href="assets/mobirise/css/mbr-additional.css" type="text/css">
</head>
<body>
<section class="menu cid-qTkzRZLJNu" once="menu" id="menu1-7">
<nav class="navbar navbar-expand beta-menu navbar-dropdown align-items-center navbar-toggleable-sm">
<button class="navbar-toggler navbar-toggler-right" type="button" data-toggle="collapse" data-target="#navbarSupportedContent" aria-controls="navbarSupportedContent" aria-expanded="false" aria-label="Toggle navigation">
<div class="hamburger">
<span></span>
<span></span>
<span></span>
<span></span>
</div>
</button>
<div class="menu-logo">
<div class="navbar-brand">
<span class="navbar-logo">
<a href="https://crg.eu">
<img src="assets/images/crg-logo.png" alt="" title="" style="height: 3.8rem;">
</a>
</span>
</div>
</div>
<div class="collapse navbar-collapse" id="navbarSupportedContent">
<ul class="navbar-nav nav-dropdown nav-right" data-app-modern-menu="true"><li class="nav-item">
<a class="nav-link link text-white display-4" href="index.html">
<span class="mbri-home mbr-iconfont mbr-iconfont-btn"></span>
Home</a>
</li><li class="nav-item">
<a class="nav-link link text-white display-4" href="page1.html">
<span class="mbri-search mbr-iconfont mbr-iconfont-btn"></span>
Research</a>
</li><li class="nav-item"><a class="nav-link link text-white display-4" href="page2.html"><span class="mobi-mbri mobi-mbri-users mbr-iconfont mbr-iconfont-btn"></span>
People</a></li><li class="nav-item"><a class="nav-link link text-white display-4" href="page3.html"><span class="mbri-pages mbr-iconfont mbr-iconfont-btn"></span>
Publications</a></li><li class="nav-item"><a class="nav-link link text-white display-4" href="page4.html"><span class="mbri-database mbr-iconfont mbr-iconfont-btn"></span>
Resources</a></li><li class="nav-item"><a class="nav-link link text-white display-4" href="page5.html"><span class="mbri-smile-face mbr-iconfont mbr-iconfont-btn"></span>
Fun Science</a></li></ul>
</div>
</nav>
</section>
<section class="timeline1 cid-rUPEHMzrSo" id="timeline1-14">
<div class="container align-center">
<h2 class="mbr-section-title pb-3 mbr-fonts-style display-2">
Publications</h2>
<h3 class="mbr-section-subtitle pb-5 mbr-fonts-style display-5">Timeline</h3>
<div class="container timelines-container reverseTimeline" mbri-timelines="">
<!--1-->
<div class="row timeline-element reverse">
<div class="timeline-date-panel col-xs-12 col-md-6 align-left">
<div class="time-line-date-content">
<p class="mbr-timeline-date mbr-fonts-style display-5">
September 2018</p>
</div>
</div>
<span class="iconBackground"></span>
<div class="col-xs-12 col-md-6 align-right">
<div class="timeline-text-content">
<h4 class="mbr-timeline-title pb-3 mbr-fonts-style display-5">
Novoa Lab Established</h4>
<p class="mbr-timeline-text mbr-fonts-style display-7"></p>
</div>
</div>
</div>
<!--2-->
<div class="row timeline-element separline">
<div class="timeline-date-panel col-xs-12 col-md-6 align-right">
<div class="time-line-date-content">
<p class="mbr-timeline-date mbr-fonts-style display-5">September 2019</p>
</div>
</div>
<span class="iconBackground"></span>
<div class="col-xs-12 col-md-6 align-left ">
<div class="timeline-text-content">
<h4 class="mbr-timeline-title pb-3 mbr-fonts-style display-5"><a href="https://www.nature.com/articles/s41467-019-11713-9" target="_blank">Accurate detection of m6A RNA modifications in native RNA sequences</a></h4>
<p class="mbr-timeline-text mbr-fonts-style display-7">Huanle Liu*, Oguzhan Begik*, Morghan C. Lucas, Jose Miguel Ramirez, Christopher E. Mason, David Wiener, Schraga Schwartz, John S. Mattick, Martin A. Smith & Eva Maria Novoa. <strong> </strong><br><strong>Nature Communications</strong></p>
</div>
</div>
</div>
<!--3-->
<div class="row timeline-element reverse separline">
<div class="timeline-date-panel col-xs-12 col-md-6 align-left">
<div class="time-line-date-content">
<p class="mbr-timeline-date mbr-fonts-style display-5">November 2019</p>
</div>
</div>
<span class="iconBackground"></span>
<div class="col-xs-12 col-md-6 align-right">
<div class="timeline-text-content">
<h4 class="mbr-timeline-title pb-3 mbr-fonts-style display-5"><a href="https://www.biorxiv.org/content/10.1101/830968v1" target="_blank">Integrative analyses of the RNA modification machinery reveal tissue- and cancer-specific signatures</a></h4>
<p class="mbr-timeline-text mbr-fonts-style display-7">Oguzhan Begik, Morghan C. Lucas, Huanle Liu, Jose Miguel Ramirez, John S. Mattick, Eva Maria Novoa<br><strong>BioRxiv (Under Review)</strong></p>
</div>
</div>
</div>
<!--4-->
<div class="row timeline-element separline">
<div class="timeline-date-panel col-xs-12 col-md-6 align-right">
<div class="time-line-date-content">
<p class="mbr-timeline-date mbr-fonts-style display-5">
December 2019</p>
</div>
</div>
<span class="iconBackground"></span>
<div class="col-xs-12 col-md-6 align-left ">
<div class="timeline-text-content">
<h4 class="mbr-timeline-title pb-3 mbr-fonts-style display-5"><a href="https://www.biorxiv.org/content/10.1101/864322v2" target="_blank">Barcoding and demultiplexing Oxford Nanopore native RNA sequencing reads with deep residual learning</a></h4>
<p class="mbr-timeline-text mbr-fonts-style display-7">Martin A. Smith, Tansel Ersavas, James M. Ferguson, Huanle Liu, Morghan C Lucas, Oguzhan Begik, Lilly Bojarski, Kirston Barton,Eva Maria Novoa<br><strong>BioRxiv (Under Review)</strong><br></p>
</div>
</div>
</div>
<!--5-->
<div class="row timeline-element reverse separline">
<div class="timeline-date-panel col-xs-12 col-md-6 align-left">
<div class="time-line-date-content">
<p class="mbr-timeline-date mbr-fonts-style display-5">
March 2020 </p>
</div>
</div>
<span class="iconBackground"></span>
<div class="col-xs-12 col-md-6 align-right">
<div class="timeline-text-content">
<h4 class="mbr-timeline-title pb-3 mbr-fonts-style display-5"><a href="https://www.frontiersin.org/articles/10.3389/fgene.2020.00211/full" target="_blank">MasterOfPores: A Workflow for the Analysis of Oxford Nanopore Direct RNA Sequencing Datasets</a></h4>
<p class="mbr-timeline-text mbr-fonts-style display-7">Luca Cozzuto, Huanle Liu, Leszek P. Pryszcz, Toni Hermoso Pulido, Anna Delgado-Tejedor, Julia Ponomarenko, and Eva Maria Novoa. <br><strong>Frontiers in Genetics</strong></p>
</div>
</div>
</div>
<!--6-->
<div class="row timeline-element separline">
<div class="timeline-date-panel col-xs-12 col-md-6 align-right">
<div class="time-line-date-content">
<p class="mbr-timeline-date mbr-fonts-style display-5">
May 2020</p>
</div>
</div>
<span class="iconBackground"></span>
<div class="col-xs-12 col-md-6 align-left ">
<div class="timeline-text-content">
<h4 class="mbr-timeline-title pb-3 mbr-fonts-style display-5"><a href="https://genomebiology.biomedcentral.com/articles/10.1186/s13059-020-02009-z" target="_blank">Integrative analyses of the RNA modification machinery reveal tissue- and cancer-specific signatures</a></h4>
<p class="mbr-timeline-text mbr-fonts-style display-7">Oguzhan Begik, Morghan C. Lucas, Huanle Liu, Jose Miguel Ramirez, John S. Mattick, Eva Maria Novoa<br><strong>Genome Biology</strong></p>
</div>
</div>
</div>
<!--7-->
<div class="row timeline-element reverse separline">
<div class="timeline-date-panel col-xs-12 col-md-6 align-left">
<div class="time-line-date-content">
<p class="mbr-timeline-date mbr-fonts-style display-5">
July 2020</p>
</div>
</div>
<span class="iconBackground"></span>
<div class="col-xs-12 col-md-6 align-right">
<div class="timeline-text-content">
<h4 class="mbr-timeline-title pb-3 mbr-fonts-style display-5"><a href="https://www.biorxiv.org/content/10.1101/2020.07.06.189969v2" target="_blank">Decoding ribosomal RNA modification dynamics at single molecule resolution</a></h4>
<p class="mbr-timeline-text mbr-fonts-style display-7">Oguzhan Begik*, Morghan C Lucas*, Jose Miguel Ramirez, Ivan Milenkovic, Sonia Cruciani, Helaine Graziele Santos Vieira, Rebeca Medina, Huanle Liu, Aldema Sas-Chen, John S Mattick,Schraga Schwartz, Eva Maria Novoa<br><strong>BioRxiv (Under Review)</strong><br></p>
</div>
</div>
</div>
<!--8-->
<div class="row timeline-element separline">
<div class="timeline-date-panel col-xs-12 col-md-6 align-right">
<div class="time-line-date-content">
<p class="mbr-timeline-date mbr-fonts-style display-5">
September 2020</p>
</div>
</div>
<span class="iconBackground"></span>
<div class="col-xs-12 col-md-6 align-left ">
<div class="timeline-text-content">
<h4 class="mbr-timeline-title pb-3 mbr-fonts-style display-5"><a href="https://genome.cshlp.org/content/30/9/1345" target="_blank">Molecular barcoding of native RNAs using nanopore sequencing and deep learning</a></h4>
<p class="mbr-timeline-text mbr-fonts-style display-7">Martin A. Smith*, Tansel Ersavas*, James M. Ferguson*, Huanle Liu, Morghan C Lucas, Oguzhan Begik, Lilly Bojarski, Kirston Barton,Eva Maria Novoa
<br><strong>Genome Research </strong><br><br>
</p>
</div>
</div>
</div>
<!--9-->
<!--10-->
<!--11-->
<!--12-->
</div>
</div>
</section><section class="display-7" style="padding: 0;align-items: center;justify-content: center;flex-wrap: wrap; align-content: center;display: flex;position: relative;height: 4rem;"><a href="https://mobiri.se/2765869" style="flex: 1 1;height: 4rem;position: absolute;width: 100%;z-index: 1;"><img alt="" style="height: 4rem;" src="data:image/gif;base64,R0lGODlhAQABAIAAAP///wAAACH5BAEAAAAALAAAAAABAAEAAAICRAEAOw=="></a><p style="margin: 0;text-align: center;" class="display-7">Designed with Mobirise ‌</p><a style="z-index:1" href="https://mobirise.com/website-design-software.html">Website Designer Software</a></section><script src="assets/popper/popper.min.js"></script> <script src="assets/web/assets/jquery/jquery.min.js"></script> <script src="assets/bootstrap/js/bootstrap.min.js"></script> <script src="assets/tether/tether.min.js"></script> <script src="assets/smoothscroll/smooth-scroll.js"></script> <script src="assets/dropdown/js/nav-dropdown.js"></script> <script src="assets/dropdown/js/navbar-dropdown.js"></script> <script src="assets/touchswipe/jquery.touch-swipe.min.js"></script> <script src="assets/theme/js/script.js"></script>
</body>
</html>