From 64a325d9663d758f351114e4b9a39290d8746989 Mon Sep 17 00:00:00 2001 From: github-actions Date: Tue, 4 Jun 2024 11:48:41 +0000 Subject: [PATCH] fetch all tools bot - step fetch --- results/repositories02.list_tools.json | 4 ++-- results/repositories02.list_tools.tsv | 2 +- 2 files changed, 3 insertions(+), 3 deletions(-) diff --git a/results/repositories02.list_tools.json b/results/repositories02.list_tools.json index 0debb1b3..2d918823 100644 --- a/results/repositories02.list_tools.json +++ b/results/repositories02.list_tools.json @@ -6308,7 +6308,7 @@ "EDAM topic": [ "Sequence analysis" ], - "Status": "To update", + "Status": "Up-to-date", "Source": "http://ftp.ebi.ac.uk/pub/databases/Pfam/Tools/", "ToolShed categories": [ "Sequence Analysis" @@ -6319,7 +6319,7 @@ "Galaxy wrapper parsed folder": "https://github.com/bgruening/galaxytools/tree/master/tools/pfamscan", "Galaxy wrapper version": "1.6", "Conda id": "pfam_scan", - "Conda version": null + "Conda version": "1.6" }, { "Galaxy wrapper id": "pg_tools", diff --git a/results/repositories02.list_tools.tsv b/results/repositories02.list_tools.tsv index 90af25b1..9d2f5e93 100644 --- a/results/repositories02.list_tools.tsv +++ b/results/repositories02.list_tools.tsv @@ -212,7 +212,7 @@ partialr_square partialRsq Compute partial R square To update Statisti peakachu 3109.0 78.0 peakachu PEAKachu is a peak-caller for CLIP- and RIP-Seq data To update Sequence Analysis, RNA peakachu rnateam https://github.com/tbischler/PEAKachu https://github.com/bgruening/galaxytools/tree/master/tools/peakachu 0.2.0+galaxy1 peakachu 0.2.0 (0/1) (0/1) (1/1) (0/1) pearson_correlation Pearson_and_apos_Correlation1 Pearson and apos Correlation between any two numeric columns To update Statistics pearson_correlation devteam https://github.com/galaxyproject/tools-devteam/tree/master/tools/pearson_correlation https://github.com/galaxyproject/tools-devteam/tree/main/tools/pearson_correlation 1.0.0 (0/1) (0/1) (0/1) (0/1) perf stats_perf_tool suitable for boolean classification problems To update http://osmot.cs.cornell.edu/kddcup/software.html stats_perf_tool bgruening https://github.com/bgruening/galaxytools/tree/master/tools/perf https://github.com/bgruening/galaxytools/tree/master/tools/perf 5.11.0 perf (0/1) (0/1) (0/1) (0/1) -pfamscan 165.0 19.0 pfamscan Search a FASTA sequence against a library of Pfam HMM. pfamscan pfamscan PfamScan This tool is used to search a FASTA sequence against a library of Pfam HMM. Protein sequence analysis Sequence analysis To update http://ftp.ebi.ac.uk/pub/databases/Pfam/Tools/ Sequence Analysis pfamscan bgruening https://github.com/bgruening/galaxytools/tree/master/tools/pfamscan https://github.com/bgruening/galaxytools/tree/master/tools/pfamscan 1.6 pfam_scan (1/1) (1/1) (1/1) (1/1) +pfamscan 165.0 19.0 pfamscan Search a FASTA sequence against a library of Pfam HMM. pfamscan pfamscan PfamScan This tool is used to search a FASTA sequence against a library of Pfam HMM. Protein sequence analysis Sequence analysis Up-to-date http://ftp.ebi.ac.uk/pub/databases/Pfam/Tools/ Sequence Analysis pfamscan bgruening https://github.com/bgruening/galaxytools/tree/master/tools/pfamscan https://github.com/bgruening/galaxytools/tree/master/tools/pfamscan 1.6 pfam_scan 1.6 (1/1) (1/1) (1/1) (1/1) pg_tools pg_dump, pg_import, pg_query tool suite for dealing with Postgresql databases from Galaxy's history To update https://www.postgresql.org Data Export, Data Source pgtools bgruening https://github.com/bgruening/galaxytools/tools/pgtools https://github.com/bgruening/galaxytools/tree/master/tools/pg_tools postgresql (0/3) (0/3) (0/3) (0/3) pgsnp2gd_snp pgSnp2gd_snp Convert from pgSnp to gd_snp To update Variant Analysis pgsnp2gd_snp devteam https://github.com/galaxyproject/tools-devteam/tree/master/tools/pgsnp2gd_snp https://github.com/galaxyproject/tools-devteam/tree/main/tools/pgsnp2gd_snp 1.0.0 (0/1) (0/1) (0/1) (0/1) pharmcat 82.0 14.0 pharmcat Pharmacogenomics Clinical Annotation Tool To update https://pharmcat.org/ Variant Analysis pharmcat bgruening https://github.com/bgruening/galaxytools/tree/master/tools/pharmcat https://github.com/bgruening/galaxytools/tree/master/tools/pharmcat (1/1) (0/1) (1/1) (0/1)