From 94de69abff7875b0d6a7ad59378ef6125f70d984 Mon Sep 17 00:00:00 2001 From: "Christopher J. Markiewicz" Date: Wed, 24 Feb 2021 12:47:54 -0500 Subject: [PATCH 01/39] MNT: Move back to declarative package finding --- setup.cfg | 7 +++++++ setup.py | 5 +---- 2 files changed, 8 insertions(+), 4 deletions(-) diff --git a/setup.cfg b/setup.cfg index 5c5f976..b11d7d2 100644 --- a/setup.cfg +++ b/setup.cfg @@ -19,6 +19,13 @@ test_requires = pytest-rerunfailures codecov +packages = find_namespace: + +[options.packages.find] +include = + pydra.tasks.%(subpackage)s + pydra.tasks.%(subpackage)s.* + [options.extras_require] doc = packaging diff --git a/setup.py b/setup.py index 0880252..b3e2127 100755 --- a/setup.py +++ b/setup.py @@ -1,7 +1,7 @@ #!/usr/bin/env python import sys -from setuptools import setup, find_namespace_packages +from setuptools import setup import versioneer SUBPACKAGE = "TODO" @@ -19,7 +19,4 @@ setup_requires=SETUP_REQUIRES, version=versioneer.get_version(), cmdclass=versioneer.get_cmdclass(), - packages=find_namespace_packages( - include=(f"pydra.tasks.{SUBPACKAGE}", f"pydra.tasks.{SUBPACKAGE}.*") - ), ) From 6d5e1c9689bf0a0a21ee23a9e2e0d92a3d55d60d Mon Sep 17 00:00:00 2001 From: "Christopher J. Markiewicz" Date: Wed, 24 Feb 2021 13:02:25 -0500 Subject: [PATCH 02/39] MNT: Drop tests_require, since setup.py test is deprecated and we misspelled it anyway --- setup.cfg | 9 --------- setup.py | 3 ++- 2 files changed, 2 insertions(+), 10 deletions(-) diff --git a/setup.cfg b/setup.cfg index b11d7d2..e9a4654 100644 --- a/setup.cfg +++ b/setup.cfg @@ -10,15 +10,6 @@ description = TODO python_requires = >=3.7 install_requires = pydra >= 0.6.2 - -test_requires = - pytest >= 4.4.0 - pytest-cov - pytest-env - pytest-xdist - pytest-rerunfailures - codecov - packages = find_namespace: [options.packages.find] diff --git a/setup.py b/setup.py index b3e2127..9faa522 100755 --- a/setup.py +++ b/setup.py @@ -8,8 +8,9 @@ # Give setuptools a hint to complain if it's too old a version # 30.3.0 allows us to put most metadata in setup.cfg +# 40.1.0 enables the `find_namespace:` directive # Should match pyproject.toml -SETUP_REQUIRES = ["setuptools >= 30.3.0"] +SETUP_REQUIRES = ["setuptools >= 40.1.0"] # This enables setuptools to install wheel on-the-fly SETUP_REQUIRES += ["wheel"] if "bdist_wheel" in sys.argv else [] From 9c5c4d1749dd018c20feab0ab2f095264c4af887 Mon Sep 17 00:00:00 2001 From: "Christopher J. Markiewicz" Date: Wed, 24 Feb 2021 13:10:01 -0500 Subject: [PATCH 03/39] CI: Test on Python 3.9 --- .github/workflows/pythonpackage.yml | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/.github/workflows/pythonpackage.yml b/.github/workflows/pythonpackage.yml index 410647b..6eda72b 100644 --- a/.github/workflows/pythonpackage.yml +++ b/.github/workflows/pythonpackage.yml @@ -18,7 +18,7 @@ jobs: runs-on: ubuntu-latest strategy: matrix: - python-version: [3.7, 3.8] + python-version: [3.7, 3.8, 3.9] pip-flags: ['', '--editable'] pydra: - 'pydra' From 9a68a9341edc101e323ae2e9c8528c841a7cb49e Mon Sep 17 00:00:00 2001 From: "Christopher J. Markiewicz" Date: Wed, 24 Feb 2021 13:12:22 -0500 Subject: [PATCH 04/39] DOC: Note that projects should probably drop editable tests --- .github/workflows/pythonpackage.yml | 5 +++++ README.md | 2 ++ 2 files changed, 7 insertions(+) diff --git a/.github/workflows/pythonpackage.yml b/.github/workflows/pythonpackage.yml index 6eda72b..7123e39 100644 --- a/.github/workflows/pythonpackage.yml +++ b/.github/workflows/pythonpackage.yml @@ -1,6 +1,11 @@ #This workflow will install Python dependencies, run tests and lint with a variety of Python versions # For more information see: https://help.github.com/actions/language-and-framework-guides/using-python-with-github-actions +# Note that editable installs of Pydra and the task package is useful to ensure that the +# template describes namespace packages that can be used in various development environments. +# Packages that use it probably do not want to continue testing with editable installations, +# quadrupling their test load. + name: Python package # Set once diff --git a/README.md b/README.md index 2660e7a..4c0d240 100644 --- a/README.md +++ b/README.md @@ -16,6 +16,8 @@ All tasks will be inserted into the `pydra.tasks.` namespac 1. An example subpackage is found in `pydra/tasks//utils`. You may wish to add tools to it or delete it. 1. You may want to initialize a [Sphinx] docs directory. +1. Review the workflow in `.github/workflows/pythonpackage.yml`. Testing editable installations + is probably not useful unless you are reconfiguring namespace packages. 1. **Update this README after creating the new repository.** [Sphinx]: https://www.sphinx-doc.org/en/master/usage/quickstart.html From f23389df75f6f1dd6c76b38bb8f67856d3378b4b Mon Sep 17 00:00:00 2001 From: Chris Markiewicz Date: Fri, 9 Apr 2021 12:39:05 -0400 Subject: [PATCH 05/39] CI: Add PyPI deployment to GHA worfklow --- .github/workflows/pythonpackage.yml | 38 ++++++++++++++++++++++++++++- 1 file changed, 37 insertions(+), 1 deletion(-) diff --git a/.github/workflows/pythonpackage.yml b/.github/workflows/pythonpackage.yml index 7123e39..cde01df 100644 --- a/.github/workflows/pythonpackage.yml +++ b/.github/workflows/pythonpackage.yml @@ -6,6 +6,9 @@ # Packages that use it probably do not want to continue testing with editable installations, # quadrupling their test load. +# For deployment, it will be necessary to create a PyPI API token and store it as a secret +# https://docs.github.com/en/actions/reference/encrypted-secrets + name: Python package # Set once @@ -15,11 +18,12 @@ env: on: push: branches: [ main ] + tags: [ '*' ] pull_request: branches: [ main ] jobs: - build: + test: runs-on: ubuntu-latest strategy: matrix: @@ -50,3 +54,35 @@ jobs: - name: Test with pytest run: | pytest -sv --doctest-modules pydra/tasks/$SUBPACKAGE + + deploy: + needs: test + runs-on: ubuntu-latest + strategy: + matrix: + python-version: [3.9] + steps: + - uses: actions/checkout@v2 + with: + submodules: recursive + fetch-depth: 0 + - name: Set up Python ${{ matrix.python-version }} + uses: actions/setup-python@v2 + with: + python-version: ${{ matrix.python-version }} + - name: Install build tools + run: python -m pip install --upgrade pip setuptools wheel twine + - name: Build source and wheel distributions + run: python setup.py sdist bdist_wheel + - name: Check distributions + run: twine check dist/* + - uses: actions/upload-artifact@v2 + with: + name: distributions + path: dist/ + - name: Upload to PyPI (on tags) + if: github.event_name == 'push' && startsWith(github.ref, 'refs/tags') + uses: pypa/gh-action-pypi-publish@master + with: + user: __token__ + password: ${{ secrets.PYPI_API_TOKEN }} From 5fdd48594be9ba28badf9826a6f0b7fed2f96225 Mon Sep 17 00:00:00 2001 From: Chris Markiewicz Date: Fri, 9 Apr 2021 12:39:14 -0400 Subject: [PATCH 06/39] MNT: Update copyright year --- LICENSE | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/LICENSE b/LICENSE index 7a3fc18..e00bcb3 100644 --- a/LICENSE +++ b/LICENSE @@ -1,4 +1,4 @@ - Copyright 2020 Nipype developers + Copyright 2021 Nipype developers Licensed under the Apache License, Version 2.0 (the "License"); you may not use this file except in compliance with the License. From 2d4addc6e260c490066de82854351242caf0f881 Mon Sep 17 00:00:00 2001 From: Chris Markiewicz Date: Fri, 9 Apr 2021 12:48:54 -0400 Subject: [PATCH 07/39] ENH: Add description, license, classifiers --- setup.cfg | 14 ++++++++++++++ 1 file changed, 14 insertions(+) diff --git a/setup.cfg b/setup.cfg index e9a4654..5dd65f6 100644 --- a/setup.cfg +++ b/setup.cfg @@ -5,6 +5,20 @@ subpackage = TODO author = TODO author_email = TODO description = TODO +long_description = file:README.md +long_description_content_type = text/markdown; variant=CommonMark +license = Apache License, 2.0 +classifiers = + Development Status :: 2 - Pre-Alpha + Environment :: Console + Intended Audience :: Science/Research + License :: OSI Approved :: Apache Software License + Operating System :: MacOS :: MacOS X + Operating System :: POSIX :: Linux + Programming Language :: Python :: 3.7 + Programming Language :: Python :: 3.8 + Programming Language :: Python :: 3.9 + Topic :: Scientific/Engineering [options] python_requires = >=3.7 From 90fb4c7aec2a7c29b906ff665b3ffbaffb7e32e5 Mon Sep 17 00:00:00 2001 From: Chris Markiewicz Date: Fri, 9 Apr 2021 16:05:41 -0400 Subject: [PATCH 08/39] CI: Condition upload attempt on presence of token --- .github/workflows/pythonpackage.yml | 12 +++++++++++- README.md | 9 ++++++++- 2 files changed, 19 insertions(+), 2 deletions(-) diff --git a/.github/workflows/pythonpackage.yml b/.github/workflows/pythonpackage.yml index cde01df..4fe6eaf 100644 --- a/.github/workflows/pythonpackage.yml +++ b/.github/workflows/pythonpackage.yml @@ -80,8 +80,18 @@ jobs: with: name: distributions path: dist/ - - name: Upload to PyPI (on tags) + # Deploy on tags if PYPI_API_TOKEN is defined in the repository secrets. + # Secrets are not accessible in the if: condition [0], so set an output variable [1] + # [0] https://github.community/t/16928 + # [1] https://docs.github.com/en/actions/reference/workflow-commands-for-github-actions#setting-an-output-parameter + - name: Check for PyPI token on tag + id: deployable if: github.event_name == 'push' && startsWith(github.ref, 'refs/tags') + env: + PYPI_API_TOKEN: "${{ secrets.PYPI_API_TOKEN }}" + run: if [ -n "$PYPI_API_TOKEN" ]; then echo ::set-output name=DEPLOY::true; fi + - name: Upload to PyPI + if: steps.deployable.outputs.DEPLOY uses: pypa/gh-action-pypi-publish@master with: user: __token__ diff --git a/README.md b/README.md index 4c0d240..80d77cf 100644 --- a/README.md +++ b/README.md @@ -35,7 +35,10 @@ python setup.py sdist bdist_wheel twine upload dist/* ``` -Note that we assume tags will be version numbers and not be prefixed with `v` or some other +Note that uploading to PyPI is done via [Continuous integration](#continuous-integration)) when +a tag is pushed to the repository, so only the first step needs to be donne manually. + +Note also that we assume tags will be version numbers and not be prefixed with `v` or some other string. See Versioneer documentation for alternative configurations. ## Namespace packages @@ -72,6 +75,10 @@ non-compliant package can potentially affect Pydra or other task packages. In addition to verifying installations do not break or conflict, pytest is run on the package, including all tests found in `test/` directories and [doctests]. +Finally, packages are built and uploaded as artifacts for inspection. When a tag is pushed, +the packages are uploaded to PyPI if a valid [API token](https://pypi.org/help/#apitoken) is placed +in the [repository secrets](https://docs.github.com/en/actions/reference/encrypted-secrets). + [doctests]: https://docs.python.org/3/library/doctest.html # Contributing to this template From 89e8d85eed0680da1165a8bbd204855a9edd953f Mon Sep 17 00:00:00 2001 From: "Christopher J. Markiewicz" Date: Sat, 10 Apr 2021 09:30:40 -0400 Subject: [PATCH 09/39] CI: Pin to hash to avoid potential exploits --- .github/workflows/pythonpackage.yml | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/.github/workflows/pythonpackage.yml b/.github/workflows/pythonpackage.yml index 4fe6eaf..4d3d9b9 100644 --- a/.github/workflows/pythonpackage.yml +++ b/.github/workflows/pythonpackage.yml @@ -92,7 +92,7 @@ jobs: run: if [ -n "$PYPI_API_TOKEN" ]; then echo ::set-output name=DEPLOY::true; fi - name: Upload to PyPI if: steps.deployable.outputs.DEPLOY - uses: pypa/gh-action-pypi-publish@master + uses: pypa/gh-action-pypi-publish@27b31702a0e7fc50959f5ad993c78deac1bdfc29 # v1.4.2 with: user: __token__ password: ${{ secrets.PYPI_API_TOKEN }} From ed9411ad80be0762394f4daff4e948298bf6aebb Mon Sep 17 00:00:00 2001 From: "Christopher J. Markiewicz" Date: Sat, 10 Apr 2021 10:16:40 -0400 Subject: [PATCH 10/39] CI: Separate install checks from tests --- .github/workflows/pythonpackage.yml | 32 +++++++++++++++++++++-------- 1 file changed, 24 insertions(+), 8 deletions(-) diff --git a/.github/workflows/pythonpackage.yml b/.github/workflows/pythonpackage.yml index 4d3d9b9..1ac6b0b 100644 --- a/.github/workflows/pythonpackage.yml +++ b/.github/workflows/pythonpackage.yml @@ -1,11 +1,6 @@ #This workflow will install Python dependencies, run tests and lint with a variety of Python versions # For more information see: https://help.github.com/actions/language-and-framework-guides/using-python-with-github-actions -# Note that editable installs of Pydra and the task package is useful to ensure that the -# template describes namespace packages that can be used in various development environments. -# Packages that use it probably do not want to continue testing with editable installations, -# quadrupling their test load. - # For deployment, it will be necessary to create a PyPI API token and store it as a secret # https://docs.github.com/en/actions/reference/encrypted-secrets @@ -23,11 +18,11 @@ on: branches: [ main ] jobs: - test: + devcheck: runs-on: ubuntu-latest strategy: matrix: - python-version: [3.7, 3.8, 3.9] + python-version: [3.7, 3.9] # Check oldest and newest versions pip-flags: ['', '--editable'] pydra: - 'pydra' @@ -51,12 +46,33 @@ jobs: pip install ${{ matrix.pip-flags }} ".[dev]" python -c "import pydra.tasks.$SUBPACKAGE as m; print(f'{m.__name__} {m.__version__} @ {m.__file__}')" python -c "import pydra as m; print(f'{m.__name__} {m.__version__} @ {m.__file__}')" + + test: + runs-on: ubuntu-latest + strategy: + matrix: + python-version: [3.7, 3.8, 3.9] + + steps: + - uses: actions/checkout@v2 + - name: Set up Python ${{ matrix.python-version }} + uses: actions/setup-python@v2 + with: + python-version: ${{ matrix.python-version }} + - name: Install build dependencies + run: | + python -m pip install --upgrade pip + - name: Install task package + run: | + pip install ".[test]" + python -c "import pydra.tasks.$SUBPACKAGE as m; print(f'{m.__name__} {m.__version__} @ {m.__file__}')" + python -c "import pydra as m; print(f'{m.__name__} {m.__version__} @ {m.__file__}')" - name: Test with pytest run: | pytest -sv --doctest-modules pydra/tasks/$SUBPACKAGE deploy: - needs: test + needs: [devcheck, test] runs-on: ubuntu-latest strategy: matrix: From 8fb7ff54631f1812773b49334b0945abcd6070b2 Mon Sep 17 00:00:00 2001 From: "Christopher J. Markiewicz" Date: Sat, 10 Apr 2021 10:45:57 -0400 Subject: [PATCH 11/39] CI: Add coverage --- .github/workflows/pythonpackage.yml | 6 +++++- 1 file changed, 5 insertions(+), 1 deletion(-) diff --git a/.github/workflows/pythonpackage.yml b/.github/workflows/pythonpackage.yml index 1ac6b0b..3302aef 100644 --- a/.github/workflows/pythonpackage.yml +++ b/.github/workflows/pythonpackage.yml @@ -69,7 +69,11 @@ jobs: python -c "import pydra as m; print(f'{m.__name__} {m.__version__} @ {m.__file__}')" - name: Test with pytest run: | - pytest -sv --doctest-modules pydra/tasks/$SUBPACKAGE + pytest -sv --doctest-modules pydra/tasks/$SUBPACKAGE \ + --cov pydra.tasks.$SUBPACKAGE --cov-report xml + - uses: codecov/codecov-action@v1 + if: ${{ always() }} + deploy: needs: [devcheck, test] From ab38789fd75c27cf49e99753b9144aa0bfdf9c33 Mon Sep 17 00:00:00 2001 From: "Christopher J. Markiewicz" Date: Sat, 10 Apr 2021 10:55:53 -0400 Subject: [PATCH 12/39] MNT: Configure coverage/codecov --- .coveragerc | 4 ++++ codecov.yml | 14 ++++++++++++++ 2 files changed, 18 insertions(+) create mode 100644 .coveragerc create mode 100644 codecov.yml diff --git a/.coveragerc b/.coveragerc new file mode 100644 index 0000000..e207ce9 --- /dev/null +++ b/.coveragerc @@ -0,0 +1,4 @@ +[run] +branch = True +omit = + */_version.py diff --git a/codecov.yml b/codecov.yml new file mode 100644 index 0000000..bbf806c --- /dev/null +++ b/codecov.yml @@ -0,0 +1,14 @@ +coverage: + range: "50...100" + ignore: # files and folders that will be removed during processing + - "**/tests" + - "**/_version.py" + - "setup.py" + - "versioneer.py" + status: + project: + default: + threshold: 1 + patch: + default: + target: 80 From cb165ca3ea0f2c5b962b09fdb223d13b519cfcec Mon Sep 17 00:00:00 2001 From: "Christopher J. Markiewicz" Date: Sat, 10 Apr 2021 11:06:25 -0400 Subject: [PATCH 13/39] MNT: Upgrade versioneer to 0.19 + STY: black --- pydra/tasks/TODO/_version.py | 25 +- versioneer.py | 433 +++++++++++++++++++++-------------- 2 files changed, 279 insertions(+), 179 deletions(-) diff --git a/pydra/tasks/TODO/_version.py b/pydra/tasks/TODO/_version.py index 8aa63ef..2972046 100644 --- a/pydra/tasks/TODO/_version.py +++ b/pydra/tasks/TODO/_version.py @@ -5,7 +5,7 @@ # that just contains the computed version number. # This file is released into the public domain. Generated by -# versioneer-0.18 (https://github.com/warner/python-versioneer) +# versioneer-0.19 (https://github.com/python-versioneer/python-versioneer) """Git implementation of _version.py.""" @@ -56,7 +56,7 @@ class NotThisMethod(Exception): def register_vcs_handler(vcs, method): # decorator - """Decorator to mark a method as the handler for a particular VCS.""" + """Create decorator to mark a method as the handler of a VCS.""" def decorate(f): """Store f in HANDLERS[vcs][method].""" @@ -96,9 +96,7 @@ def run_command(commands, args, cwd=None, verbose=False, hide_stderr=False, env= if verbose: print("unable to find command, tried %s" % (commands,)) return None, None - stdout = p.communicate()[0].strip() - if sys.version_info[0] >= 3: - stdout = stdout.decode() + stdout = p.communicate()[0].strip().decode() if p.returncode != 0: if verbose: print("unable to run %s (error)" % dispcmd) @@ -174,6 +172,10 @@ def git_versions_from_keywords(keywords, tag_prefix, verbose): raise NotThisMethod("no keywords at all, weird") date = keywords.get("date") if date is not None: + # Use only the last line. Previous lines may contain GPG signature + # information. + date = date.splitlines()[-1] + # git-2.2.0 added "%cI", which expands to an ISO-8601 -compliant # datestamp. However we prefer "%ci" (which expands to an "ISO-8601 # -like" string, which we must then edit to make compliant), because @@ -325,6 +327,9 @@ def git_pieces_from_vcs(tag_prefix, root, verbose, run_command=run_command): date = run_command(GITS, ["show", "-s", "--format=%ci", "HEAD"], cwd=root)[ 0 ].strip() + # Use only the last line. Previous lines may contain GPG signature + # information. + date = date.splitlines()[-1] pieces["date"] = date.strip().replace(" ", "T", 1).replace(" ", "", 1) return pieces @@ -362,18 +367,18 @@ def render_pep440(pieces): def render_pep440_pre(pieces): - """TAG[.post.devDISTANCE] -- No -dirty. + """TAG[.post0.devDISTANCE] -- No -dirty. Exceptions: - 1: no tags. 0.post.devDISTANCE + 1: no tags. 0.post0.devDISTANCE """ if pieces["closest-tag"]: rendered = pieces["closest-tag"] if pieces["distance"]: - rendered += ".post.dev%d" % pieces["distance"] + rendered += ".post0.dev%d" % pieces["distance"] else: # exception #1 - rendered = "0.post.dev%d" % pieces["distance"] + rendered = "0.post0.dev%d" % pieces["distance"] return rendered @@ -409,7 +414,7 @@ def render_pep440_old(pieces): The ".dev0" means dirty. - Eexceptions: + Exceptions: 1: no tags. 0.postDISTANCE[.dev0] """ if pieces["closest-tag"]: diff --git a/versioneer.py b/versioneer.py index 64fea1c..d5e0eb5 100644 --- a/versioneer.py +++ b/versioneer.py @@ -1,5 +1,4 @@ - -# Version: 0.18 +# Version: 0.19 """The Versioneer - like a rocketeer, but for versions. @@ -7,16 +6,12 @@ ============== * like a rocketeer, but for versions! -* https://github.com/warner/python-versioneer +* https://github.com/python-versioneer/python-versioneer * Brian Warner * License: Public Domain -* Compatible With: python2.6, 2.7, 3.2, 3.3, 3.4, 3.5, 3.6, and pypy -* [![Latest Version] -(https://pypip.in/version/versioneer/badge.svg?style=flat) -](https://pypi.python.org/pypi/versioneer/) -* [![Build Status] -(https://travis-ci.org/warner/python-versioneer.png?branch=master) -](https://travis-ci.org/warner/python-versioneer) +* Compatible with: Python 3.6, 3.7, 3.8, 3.9 and pypy3 +* [![Latest Version][pypi-image]][pypi-url] +* [![Build Status][travis-image]][travis-url] This is a tool for managing a recorded version number in distutils-based python projects. The goal is to remove the tedious and error-prone "update @@ -27,9 +22,10 @@ ## Quick Install -* `pip install versioneer` to somewhere to your $PATH -* add a `[versioneer]` section to your setup.cfg (see below) +* `pip install versioneer` to somewhere in your $PATH +* add a `[versioneer]` section to your setup.cfg (see [Install](INSTALL.md)) * run `versioneer install` in your source tree, commit the results +* Verify version information with `python setup.py version` ## Version Identifiers @@ -61,7 +57,7 @@ for example `git describe --tags --dirty --always` reports things like "0.7-1-g574ab98-dirty" to indicate that the checkout is one revision past the 0.7 tag, has a unique revision id of "574ab98", and is "dirty" (it has -uncommitted changes. +uncommitted changes). The version identifier is used for multiple purposes: @@ -166,7 +162,7 @@ Some situations are known to cause problems for Versioneer. This details the most significant ones. More can be found on Github -[issues page](https://github.com/warner/python-versioneer/issues). +[issues page](https://github.com/python-versioneer/python-versioneer/issues). ### Subprojects @@ -180,7 +176,7 @@ `setup.cfg`, and `tox.ini`. Projects like these produce multiple PyPI distributions (and upload multiple independently-installable tarballs). * Source trees whose main purpose is to contain a C library, but which also - provide bindings to Python (and perhaps other langauges) in subdirectories. + provide bindings to Python (and perhaps other languages) in subdirectories. Versioneer will look for `.git` in parent directories, and most operations should get the right version string. However `pip` and `setuptools` have bugs @@ -194,9 +190,9 @@ Pip-8.1.1 is known to have this problem, but hopefully it will get fixed in some later version. -[Bug #38](https://github.com/warner/python-versioneer/issues/38) is tracking +[Bug #38](https://github.com/python-versioneer/python-versioneer/issues/38) is tracking this issue. The discussion in -[PR #61](https://github.com/warner/python-versioneer/pull/61) describes the +[PR #61](https://github.com/python-versioneer/python-versioneer/pull/61) describes the issue from the Versioneer side in more detail. [pip PR#3176](https://github.com/pypa/pip/pull/3176) and [pip PR#3615](https://github.com/pypa/pip/pull/3615) contain work to improve @@ -224,22 +220,10 @@ cause egg_info to be rebuilt (including `sdist`, `wheel`, and installing into a different virtualenv), so this can be surprising. -[Bug #83](https://github.com/warner/python-versioneer/issues/83) describes +[Bug #83](https://github.com/python-versioneer/python-versioneer/issues/83) describes this one, but upgrading to a newer version of setuptools should probably resolve it. -### Unicode version strings - -While Versioneer works (and is continually tested) with both Python 2 and -Python 3, it is not entirely consistent with bytes-vs-unicode distinctions. -Newer releases probably generate unicode version strings on py2. It's not -clear that this is wrong, but it may be surprising for applications when then -write these strings to a network connection or include them in bytes-oriented -APIs like cryptographic checksums. - -[Bug #71](https://github.com/warner/python-versioneer/issues/71) investigates -this question. - ## Updating Versioneer @@ -265,6 +249,12 @@ direction and include code from all supported VCS systems, reducing the number of intermediate scripts. +## Similar projects + +* [setuptools_scm](https://github.com/pypa/setuptools_scm/) - a non-vendored build-time + dependency +* [minver](https://github.com/jbweston/miniver) - a lightweight reimplementation of + versioneer ## License @@ -274,13 +264,15 @@ Dedication" license (CC0-1.0), as described in https://creativecommons.org/publicdomain/zero/1.0/ . +[pypi-image]: https://img.shields.io/pypi/v/versioneer.svg +[pypi-url]: https://pypi.python.org/pypi/versioneer/ +[travis-image]: +https://img.shields.io/travis/com/python-versioneer/python-versioneer.svg +[travis-url]: https://travis-ci.com/github/python-versioneer/python-versioneer + """ -from __future__ import print_function -try: - import configparser -except ImportError: - import ConfigParser as configparser +import configparser import errno import json import os @@ -308,11 +300,13 @@ def get_root(): setup_py = os.path.join(root, "setup.py") versioneer_py = os.path.join(root, "versioneer.py") if not (os.path.exists(setup_py) or os.path.exists(versioneer_py)): - err = ("Versioneer was unable to run the project root directory. " - "Versioneer requires setup.py to be executed from " - "its immediate directory (like 'python setup.py COMMAND'), " - "or in a way that lets it use sys.argv[0] to find the root " - "(like 'python path/to/setup.py COMMAND').") + err = ( + "Versioneer was unable to run the project root directory. " + "Versioneer requires setup.py to be executed from " + "its immediate directory (like 'python setup.py COMMAND'), " + "or in a way that lets it use sys.argv[0] to find the root " + "(like 'python path/to/setup.py COMMAND')." + ) raise VersioneerBadRootError(err) try: # Certain runtime workflows (setup.py install/develop in a setuptools @@ -325,8 +319,10 @@ def get_root(): me_dir = os.path.normcase(os.path.splitext(me)[0]) vsr_dir = os.path.normcase(os.path.splitext(versioneer_py)[0]) if me_dir != vsr_dir: - print("Warning: build in %s is using versioneer.py from %s" - % (os.path.dirname(me), versioneer_py)) + print( + "Warning: build in %s is using versioneer.py from %s" + % (os.path.dirname(me), versioneer_py) + ) except NameError: pass return root @@ -339,15 +335,16 @@ def get_config_from_root(root): # configparser.NoOptionError (if it lacks "VCS="). See the docstring at # the top of versioneer.py for instructions on writing your setup.cfg . setup_cfg = os.path.join(root, "setup.cfg") - parser = configparser.SafeConfigParser() + parser = configparser.ConfigParser() with open(setup_cfg, "r") as f: - parser.readfp(f) + parser.read_file(f) VCS = parser.get("versioneer", "VCS") # mandatory def get(parser, name): if parser.has_option("versioneer", name): return parser.get("versioneer", name) return None + cfg = VersioneerConfig() cfg.VCS = VCS cfg.style = get(parser, "style") or "" @@ -371,18 +368,19 @@ class NotThisMethod(Exception): def register_vcs_handler(vcs, method): # decorator - """Decorator to mark a method as the handler for a particular VCS.""" + """Create decorator to mark a method as the handler of a VCS.""" + def decorate(f): """Store f in HANDLERS[vcs][method].""" if vcs not in HANDLERS: HANDLERS[vcs] = {} HANDLERS[vcs][method] = f return f + return decorate -def run_command(commands, args, cwd=None, verbose=False, hide_stderr=False, - env=None): +def run_command(commands, args, cwd=None, verbose=False, hide_stderr=False, env=None): """Call the given command(s).""" assert isinstance(commands, list) p = None @@ -390,10 +388,13 @@ def run_command(commands, args, cwd=None, verbose=False, hide_stderr=False, try: dispcmd = str([c] + args) # remember shell=False, so use git.cmd on windows, not just git - p = subprocess.Popen([c] + args, cwd=cwd, env=env, - stdout=subprocess.PIPE, - stderr=(subprocess.PIPE if hide_stderr - else None)) + p = subprocess.Popen( + [c] + args, + cwd=cwd, + env=env, + stdout=subprocess.PIPE, + stderr=(subprocess.PIPE if hide_stderr else None), + ) break except EnvironmentError: e = sys.exc_info()[1] @@ -407,9 +408,7 @@ def run_command(commands, args, cwd=None, verbose=False, hide_stderr=False, if verbose: print("unable to find command, tried %s" % (commands,)) return None, None - stdout = p.communicate()[0].strip() - if sys.version_info[0] >= 3: - stdout = stdout.decode() + stdout = p.communicate()[0].strip().decode() if p.returncode != 0: if verbose: print("unable to run %s (error)" % dispcmd) @@ -418,7 +417,9 @@ def run_command(commands, args, cwd=None, verbose=False, hide_stderr=False, return stdout, p.returncode -LONG_VERSION_PY['git'] = ''' +LONG_VERSION_PY[ + "git" +] = r''' # This file helps to compute a version number in source trees obtained from # git-archive tarball (such as those provided by githubs download-from-tag # feature). Distribution tarballs (built by setup.py sdist) and build @@ -426,7 +427,7 @@ def run_command(commands, args, cwd=None, verbose=False, hide_stderr=False, # that just contains the computed version number. # This file is released into the public domain. Generated by -# versioneer-0.18 (https://github.com/warner/python-versioneer) +# versioneer-0.19 (https://github.com/python-versioneer/python-versioneer) """Git implementation of _version.py.""" @@ -477,7 +478,7 @@ class NotThisMethod(Exception): def register_vcs_handler(vcs, method): # decorator - """Decorator to mark a method as the handler for a particular VCS.""" + """Create decorator to mark a method as the handler of a VCS.""" def decorate(f): """Store f in HANDLERS[vcs][method].""" if vcs not in HANDLERS: @@ -513,9 +514,7 @@ def run_command(commands, args, cwd=None, verbose=False, hide_stderr=False, if verbose: print("unable to find command, tried %%s" %% (commands,)) return None, None - stdout = p.communicate()[0].strip() - if sys.version_info[0] >= 3: - stdout = stdout.decode() + stdout = p.communicate()[0].strip().decode() if p.returncode != 0: if verbose: print("unable to run %%s (error)" %% dispcmd) @@ -585,6 +584,10 @@ def git_versions_from_keywords(keywords, tag_prefix, verbose): raise NotThisMethod("no keywords at all, weird") date = keywords.get("date") if date is not None: + # Use only the last line. Previous lines may contain GPG signature + # information. + date = date.splitlines()[-1] + # git-2.2.0 added "%%cI", which expands to an ISO-8601 -compliant # datestamp. However we prefer "%%ci" (which expands to an "ISO-8601 # -like" string, which we must then edit to make compliant), because @@ -720,6 +723,9 @@ def git_pieces_from_vcs(tag_prefix, root, verbose, run_command=run_command): # commit date: see ISO-8601 comment in git_versions_from_keywords() date = run_command(GITS, ["show", "-s", "--format=%%ci", "HEAD"], cwd=root)[0].strip() + # Use only the last line. Previous lines may contain GPG signature + # information. + date = date.splitlines()[-1] pieces["date"] = date.strip().replace(" ", "T", 1).replace(" ", "", 1) return pieces @@ -758,18 +764,18 @@ def render_pep440(pieces): def render_pep440_pre(pieces): - """TAG[.post.devDISTANCE] -- No -dirty. + """TAG[.post0.devDISTANCE] -- No -dirty. Exceptions: - 1: no tags. 0.post.devDISTANCE + 1: no tags. 0.post0.devDISTANCE """ if pieces["closest-tag"]: rendered = pieces["closest-tag"] if pieces["distance"]: - rendered += ".post.dev%%d" %% pieces["distance"] + rendered += ".post0.dev%%d" %% pieces["distance"] else: # exception #1 - rendered = "0.post.dev%%d" %% pieces["distance"] + rendered = "0.post0.dev%%d" %% pieces["distance"] return rendered @@ -805,7 +811,7 @@ def render_pep440_old(pieces): The ".dev0" means dirty. - Eexceptions: + Exceptions: 1: no tags. 0.postDISTANCE[.dev0] """ if pieces["closest-tag"]: @@ -977,6 +983,10 @@ def git_versions_from_keywords(keywords, tag_prefix, verbose): raise NotThisMethod("no keywords at all, weird") date = keywords.get("date") if date is not None: + # Use only the last line. Previous lines may contain GPG signature + # information. + date = date.splitlines()[-1] + # git-2.2.0 added "%cI", which expands to an ISO-8601 -compliant # datestamp. However we prefer "%ci" (which expands to an "ISO-8601 # -like" string, which we must then edit to make compliant), because @@ -993,7 +1003,7 @@ def git_versions_from_keywords(keywords, tag_prefix, verbose): # starting in git-1.8.3, tags are listed as "tag: foo-1.0" instead of # just "foo-1.0". If we see a "tag: " prefix, prefer those. TAG = "tag: " - tags = set([r[len(TAG):] for r in refs if r.startswith(TAG)]) + tags = set([r[len(TAG) :] for r in refs if r.startswith(TAG)]) if not tags: # Either we're using git < 1.8.3, or there really are no tags. We use # a heuristic: assume all version tags have a digit. The old git %d @@ -1002,7 +1012,7 @@ def git_versions_from_keywords(keywords, tag_prefix, verbose): # between branches and tags. By ignoring refnames without digits, we # filter out many common branch names like "release" and # "stabilization", as well as "HEAD" and "master". - tags = set([r for r in refs if re.search(r'\d', r)]) + tags = set([r for r in refs if re.search(r"\d", r)]) if verbose: print("discarding '%s', no digits" % ",".join(refs - tags)) if verbose: @@ -1010,19 +1020,26 @@ def git_versions_from_keywords(keywords, tag_prefix, verbose): for ref in sorted(tags): # sorting will prefer e.g. "2.0" over "2.0rc1" if ref.startswith(tag_prefix): - r = ref[len(tag_prefix):] + r = ref[len(tag_prefix) :] if verbose: print("picking %s" % r) - return {"version": r, - "full-revisionid": keywords["full"].strip(), - "dirty": False, "error": None, - "date": date} + return { + "version": r, + "full-revisionid": keywords["full"].strip(), + "dirty": False, + "error": None, + "date": date, + } # no suitable tags, so version is "0+unknown", but full hex is still there if verbose: print("no suitable tags, using unknown + full revision id") - return {"version": "0+unknown", - "full-revisionid": keywords["full"].strip(), - "dirty": False, "error": "no suitable tags", "date": None} + return { + "version": "0+unknown", + "full-revisionid": keywords["full"].strip(), + "dirty": False, + "error": "no suitable tags", + "date": None, + } @register_vcs_handler("git", "pieces_from_vcs") @@ -1037,8 +1054,7 @@ def git_pieces_from_vcs(tag_prefix, root, verbose, run_command=run_command): if sys.platform == "win32": GITS = ["git.cmd", "git.exe"] - out, rc = run_command(GITS, ["rev-parse", "--git-dir"], cwd=root, - hide_stderr=True) + out, rc = run_command(GITS, ["rev-parse", "--git-dir"], cwd=root, hide_stderr=True) if rc != 0: if verbose: print("Directory %s not under git control" % root) @@ -1046,10 +1062,19 @@ def git_pieces_from_vcs(tag_prefix, root, verbose, run_command=run_command): # if there is a tag matching tag_prefix, this yields TAG-NUM-gHEX[-dirty] # if there isn't one, this yields HEX[-dirty] (no NUM) - describe_out, rc = run_command(GITS, ["describe", "--tags", "--dirty", - "--always", "--long", - "--match", "%s*" % tag_prefix], - cwd=root) + describe_out, rc = run_command( + GITS, + [ + "describe", + "--tags", + "--dirty", + "--always", + "--long", + "--match", + "%s*" % tag_prefix, + ], + cwd=root, + ) # --long was added in git-1.5.5 if describe_out is None: raise NotThisMethod("'git describe' failed") @@ -1072,17 +1097,16 @@ def git_pieces_from_vcs(tag_prefix, root, verbose, run_command=run_command): dirty = git_describe.endswith("-dirty") pieces["dirty"] = dirty if dirty: - git_describe = git_describe[:git_describe.rindex("-dirty")] + git_describe = git_describe[: git_describe.rindex("-dirty")] # now we have TAG-NUM-gHEX or HEX if "-" in git_describe: # TAG-NUM-gHEX - mo = re.search(r'^(.+)-(\d+)-g([0-9a-f]+)$', git_describe) + mo = re.search(r"^(.+)-(\d+)-g([0-9a-f]+)$", git_describe) if not mo: # unparseable. Maybe git-describe is misbehaving? - pieces["error"] = ("unable to parse git-describe output: '%s'" - % describe_out) + pieces["error"] = "unable to parse git-describe output: '%s'" % describe_out return pieces # tag @@ -1091,10 +1115,12 @@ def git_pieces_from_vcs(tag_prefix, root, verbose, run_command=run_command): if verbose: fmt = "tag '%s' doesn't start with prefix '%s'" print(fmt % (full_tag, tag_prefix)) - pieces["error"] = ("tag '%s' doesn't start with prefix '%s'" - % (full_tag, tag_prefix)) + pieces["error"] = "tag '%s' doesn't start with prefix '%s'" % ( + full_tag, + tag_prefix, + ) return pieces - pieces["closest-tag"] = full_tag[len(tag_prefix):] + pieces["closest-tag"] = full_tag[len(tag_prefix) :] # distance: number of commits since tag pieces["distance"] = int(mo.group(2)) @@ -1105,13 +1131,16 @@ def git_pieces_from_vcs(tag_prefix, root, verbose, run_command=run_command): else: # HEX: no tags pieces["closest-tag"] = None - count_out, rc = run_command(GITS, ["rev-list", "HEAD", "--count"], - cwd=root) + count_out, rc = run_command(GITS, ["rev-list", "HEAD", "--count"], cwd=root) pieces["distance"] = int(count_out) # total number of commits # commit date: see ISO-8601 comment in git_versions_from_keywords() - date = run_command(GITS, ["show", "-s", "--format=%ci", "HEAD"], - cwd=root)[0].strip() + date = run_command(GITS, ["show", "-s", "--format=%ci", "HEAD"], cwd=root)[ + 0 + ].strip() + # Use only the last line. Previous lines may contain GPG signature + # information. + date = date.splitlines()[-1] pieces["date"] = date.strip().replace(" ", "T", 1).replace(" ", "", 1) return pieces @@ -1167,21 +1196,27 @@ def versions_from_parentdir(parentdir_prefix, root, verbose): for i in range(3): dirname = os.path.basename(root) if dirname.startswith(parentdir_prefix): - return {"version": dirname[len(parentdir_prefix):], - "full-revisionid": None, - "dirty": False, "error": None, "date": None} + return { + "version": dirname[len(parentdir_prefix) :], + "full-revisionid": None, + "dirty": False, + "error": None, + "date": None, + } else: rootdirs.append(root) root = os.path.dirname(root) # up a level if verbose: - print("Tried directories %s but none started with prefix %s" % - (str(rootdirs), parentdir_prefix)) + print( + "Tried directories %s but none started with prefix %s" + % (str(rootdirs), parentdir_prefix) + ) raise NotThisMethod("rootdir doesn't start with parentdir_prefix") SHORT_VERSION_PY = """ -# This file was generated by 'versioneer.py' (0.18) from +# This file was generated by 'versioneer.py' (0.19) from # revision-control system data, or from the parent directory name of an # unpacked source archive. Distribution tarballs contain a pre-generated copy # of this file. @@ -1205,11 +1240,13 @@ def versions_from_file(filename): contents = f.read() except EnvironmentError: raise NotThisMethod("unable to read _version.py") - mo = re.search(r"version_json = '''\n(.*)''' # END VERSION_JSON", - contents, re.M | re.S) + mo = re.search( + r"version_json = '''\n(.*)''' # END VERSION_JSON", contents, re.M | re.S + ) if not mo: - mo = re.search(r"version_json = '''\r\n(.*)''' # END VERSION_JSON", - contents, re.M | re.S) + mo = re.search( + r"version_json = '''\r\n(.*)''' # END VERSION_JSON", contents, re.M | re.S + ) if not mo: raise NotThisMethod("no version_json in _version.py") return json.loads(mo.group(1)) @@ -1218,8 +1255,7 @@ def versions_from_file(filename): def write_to_version_file(filename, versions): """Write the given version number to the given _version.py file.""" os.unlink(filename) - contents = json.dumps(versions, sort_keys=True, - indent=1, separators=(",", ": ")) + contents = json.dumps(versions, sort_keys=True, indent=1, separators=(",", ": ")) with open(filename, "w") as f: f.write(SHORT_VERSION_PY % contents) @@ -1251,26 +1287,25 @@ def render_pep440(pieces): rendered += ".dirty" else: # exception #1 - rendered = "0+untagged.%d.g%s" % (pieces["distance"], - pieces["short"]) + rendered = "0+untagged.%d.g%s" % (pieces["distance"], pieces["short"]) if pieces["dirty"]: rendered += ".dirty" return rendered def render_pep440_pre(pieces): - """TAG[.post.devDISTANCE] -- No -dirty. + """TAG[.post0.devDISTANCE] -- No -dirty. Exceptions: - 1: no tags. 0.post.devDISTANCE + 1: no tags. 0.post0.devDISTANCE """ if pieces["closest-tag"]: rendered = pieces["closest-tag"] if pieces["distance"]: - rendered += ".post.dev%d" % pieces["distance"] + rendered += ".post0.dev%d" % pieces["distance"] else: # exception #1 - rendered = "0.post.dev%d" % pieces["distance"] + rendered = "0.post0.dev%d" % pieces["distance"] return rendered @@ -1306,7 +1341,7 @@ def render_pep440_old(pieces): The ".dev0" means dirty. - Eexceptions: + Exceptions: 1: no tags. 0.postDISTANCE[.dev0] """ if pieces["closest-tag"]: @@ -1366,11 +1401,13 @@ def render_git_describe_long(pieces): def render(pieces, style): """Render the given version pieces into the requested style.""" if pieces["error"]: - return {"version": "unknown", - "full-revisionid": pieces.get("long"), - "dirty": None, - "error": pieces["error"], - "date": None} + return { + "version": "unknown", + "full-revisionid": pieces.get("long"), + "dirty": None, + "error": pieces["error"], + "date": None, + } if not style or style == "default": style = "pep440" # the default @@ -1390,9 +1427,13 @@ def render(pieces, style): else: raise ValueError("unknown style '%s'" % style) - return {"version": rendered, "full-revisionid": pieces["long"], - "dirty": pieces["dirty"], "error": None, - "date": pieces.get("date")} + return { + "version": rendered, + "full-revisionid": pieces["long"], + "dirty": pieces["dirty"], + "error": None, + "date": pieces.get("date"), + } class VersioneerBadRootError(Exception): @@ -1415,8 +1456,9 @@ def get_versions(verbose=False): handlers = HANDLERS.get(cfg.VCS) assert handlers, "unrecognized VCS '%s'" % cfg.VCS verbose = verbose or cfg.verbose - assert cfg.versionfile_source is not None, \ - "please set versioneer.versionfile_source" + assert ( + cfg.versionfile_source is not None + ), "please set versioneer.versionfile_source" assert cfg.tag_prefix is not None, "please set versioneer.tag_prefix" versionfile_abs = os.path.join(root, cfg.versionfile_source) @@ -1470,9 +1512,13 @@ def get_versions(verbose=False): if verbose: print("unable to compute version") - return {"version": "0+unknown", "full-revisionid": None, - "dirty": None, "error": "unable to compute version", - "date": None} + return { + "version": "0+unknown", + "full-revisionid": None, + "dirty": None, + "error": "unable to compute version", + "date": None, + } def get_version(): @@ -1480,8 +1526,12 @@ def get_version(): return get_versions()["version"] -def get_cmdclass(): - """Get the custom setuptools/distutils subclasses used by Versioneer.""" +def get_cmdclass(cmdclass=None): + """Get the custom setuptools/distutils subclasses used by Versioneer. + + If the package uses a different cmdclass (e.g. one from numpy), it + should be provide as an argument. + """ if "versioneer" in sys.modules: del sys.modules["versioneer"] # this fixes the "python setup.py develop" case (also 'install' and @@ -1495,9 +1545,9 @@ def get_cmdclass(): # parent is protected against the child's "import versioneer". By # removing ourselves from sys.modules here, before the child build # happens, we protect the child from the parent's versioneer too. - # Also see https://github.com/warner/python-versioneer/issues/52 + # Also see https://github.com/python-versioneer/python-versioneer/issues/52 - cmds = {} + cmds = {} if cmdclass is None else cmdclass.copy() # we add "version" to both distutils and setuptools from distutils.core import Command @@ -1521,6 +1571,7 @@ def run(self): print(" date: %s" % vers.get("date")) if vers["error"]: print(" error: %s" % vers["error"]) + cmds["version"] = cmd_version # we override "build_py" in both distutils and setuptools @@ -1539,7 +1590,9 @@ def run(self): # setup.py egg_info -> ? # we override different "build_py" commands for both environments - if "setuptools" in sys.modules: + if "build_py" in cmds: + _build_py = cmds["build_py"] + elif "setuptools" in sys.modules: from setuptools.command.build_py import build_py as _build_py else: from distutils.command.build_py import build_py as _build_py @@ -1553,14 +1606,40 @@ def run(self): # now locate _version.py in the new build/ directory and replace # it with an updated value if cfg.versionfile_build: - target_versionfile = os.path.join(self.build_lib, - cfg.versionfile_build) + target_versionfile = os.path.join(self.build_lib, cfg.versionfile_build) print("UPDATING %s" % target_versionfile) write_to_version_file(target_versionfile, versions) + cmds["build_py"] = cmd_build_py + if "setuptools" in sys.modules: + from setuptools.command.build_ext import build_ext as _build_ext + else: + from distutils.command.build_ext import build_ext as _build_ext + + class cmd_build_ext(_build_ext): + def run(self): + root = get_root() + cfg = get_config_from_root(root) + versions = get_versions() + _build_ext.run(self) + if self.inplace: + # build_ext --inplace will only build extensions in + # build/lib<..> dir with no _version.py to write to. + # As in place builds will already have a _version.py + # in the module dir, we do not need to write one. + return + # now locate _version.py in the new build/ directory and replace + # it with an updated value + target_versionfile = os.path.join(self.build_lib, cfg.versionfile_source) + print("UPDATING %s" % target_versionfile) + write_to_version_file(target_versionfile, versions) + + cmds["build_ext"] = cmd_build_ext + if "cx_Freeze" in sys.modules: # cx_freeze enabled? from cx_Freeze.dist import build_exe as _build_exe + # nczeczulin reports that py2exe won't like the pep440-style string # as FILEVERSION, but it can be used for PRODUCTVERSION, e.g. # setup(console=[{ @@ -1581,21 +1660,22 @@ def run(self): os.unlink(target_versionfile) with open(cfg.versionfile_source, "w") as f: LONG = LONG_VERSION_PY[cfg.VCS] - f.write(LONG % - {"DOLLAR": "$", - "STYLE": cfg.style, - "TAG_PREFIX": cfg.tag_prefix, - "PARENTDIR_PREFIX": cfg.parentdir_prefix, - "VERSIONFILE_SOURCE": cfg.versionfile_source, - }) + f.write( + LONG + % { + "DOLLAR": "$", + "STYLE": cfg.style, + "TAG_PREFIX": cfg.tag_prefix, + "PARENTDIR_PREFIX": cfg.parentdir_prefix, + "VERSIONFILE_SOURCE": cfg.versionfile_source, + } + ) + cmds["build_exe"] = cmd_build_exe del cmds["build_py"] - if 'py2exe' in sys.modules: # py2exe enabled? - try: - from py2exe.distutils_buildexe import py2exe as _py2exe # py3 - except ImportError: - from py2exe.build_exe import py2exe as _py2exe # py2 + if "py2exe" in sys.modules: # py2exe enabled? + from py2exe.distutils_buildexe import py2exe as _py2exe class cmd_py2exe(_py2exe): def run(self): @@ -1610,17 +1690,23 @@ def run(self): os.unlink(target_versionfile) with open(cfg.versionfile_source, "w") as f: LONG = LONG_VERSION_PY[cfg.VCS] - f.write(LONG % - {"DOLLAR": "$", - "STYLE": cfg.style, - "TAG_PREFIX": cfg.tag_prefix, - "PARENTDIR_PREFIX": cfg.parentdir_prefix, - "VERSIONFILE_SOURCE": cfg.versionfile_source, - }) + f.write( + LONG + % { + "DOLLAR": "$", + "STYLE": cfg.style, + "TAG_PREFIX": cfg.tag_prefix, + "PARENTDIR_PREFIX": cfg.parentdir_prefix, + "VERSIONFILE_SOURCE": cfg.versionfile_source, + } + ) + cmds["py2exe"] = cmd_py2exe # we override different "sdist" commands for both environments - if "setuptools" in sys.modules: + if "sdist" in cmds: + _sdist = cmds["sdist"] + elif "setuptools" in sys.modules: from setuptools.command.sdist import sdist as _sdist else: from distutils.command.sdist import sdist as _sdist @@ -1643,8 +1729,10 @@ def make_release_tree(self, base_dir, files): # updated value target_versionfile = os.path.join(base_dir, cfg.versionfile_source) print("UPDATING %s" % target_versionfile) - write_to_version_file(target_versionfile, - self._versioneer_generated_versions) + write_to_version_file( + target_versionfile, self._versioneer_generated_versions + ) + cmds["sdist"] = cmd_sdist return cmds @@ -1695,15 +1783,17 @@ def make_release_tree(self, base_dir, files): def do_setup(): - """Main VCS-independent setup function for installing Versioneer.""" + """Do main VCS-independent setup function for installing Versioneer.""" root = get_root() try: cfg = get_config_from_root(root) - except (EnvironmentError, configparser.NoSectionError, - configparser.NoOptionError) as e: + except ( + EnvironmentError, + configparser.NoSectionError, + configparser.NoOptionError, + ) as e: if isinstance(e, (EnvironmentError, configparser.NoSectionError)): - print("Adding sample versioneer config to setup.cfg", - file=sys.stderr) + print("Adding sample versioneer config to setup.cfg", file=sys.stderr) with open(os.path.join(root, "setup.cfg"), "a") as f: f.write(SAMPLE_CONFIG) print(CONFIG_ERROR, file=sys.stderr) @@ -1712,15 +1802,18 @@ def do_setup(): print(" creating %s" % cfg.versionfile_source) with open(cfg.versionfile_source, "w") as f: LONG = LONG_VERSION_PY[cfg.VCS] - f.write(LONG % {"DOLLAR": "$", - "STYLE": cfg.style, - "TAG_PREFIX": cfg.tag_prefix, - "PARENTDIR_PREFIX": cfg.parentdir_prefix, - "VERSIONFILE_SOURCE": cfg.versionfile_source, - }) - - ipy = os.path.join(os.path.dirname(cfg.versionfile_source), - "__init__.py") + f.write( + LONG + % { + "DOLLAR": "$", + "STYLE": cfg.style, + "TAG_PREFIX": cfg.tag_prefix, + "PARENTDIR_PREFIX": cfg.parentdir_prefix, + "VERSIONFILE_SOURCE": cfg.versionfile_source, + } + ) + + ipy = os.path.join(os.path.dirname(cfg.versionfile_source), "__init__.py") if os.path.exists(ipy): try: with open(ipy, "r") as f: @@ -1762,8 +1855,10 @@ def do_setup(): else: print(" 'versioneer.py' already in MANIFEST.in") if cfg.versionfile_source not in simple_includes: - print(" appending versionfile_source ('%s') to MANIFEST.in" % - cfg.versionfile_source) + print( + " appending versionfile_source ('%s') to MANIFEST.in" + % cfg.versionfile_source + ) with open(manifest_in, "a") as f: f.write("include %s\n" % cfg.versionfile_source) else: From 524a1ccb7606837c217db6cd111eeb2851539ae4 Mon Sep 17 00:00:00 2001 From: "pre-commit-ci[bot]" <66853113+pre-commit-ci[bot]@users.noreply.github.com> Date: Mon, 2 Aug 2021 16:32:53 +0000 Subject: [PATCH 14/39] [pre-commit.ci] pre-commit autoupdate MIME-Version: 1.0 Content-Type: text/plain; charset=UTF-8 Content-Transfer-Encoding: 8bit updates: - [github.com/pre-commit/pre-commit-hooks: v2.0.0 → v4.0.1](https://github.com/pre-commit/pre-commit-hooks/compare/v2.0.0...v4.0.1) - [github.com/psf/black: 19.3b0 → 21.7b0](https://github.com/psf/black/compare/19.3b0...21.7b0) --- .pre-commit-config.yaml | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) diff --git a/.pre-commit-config.yaml b/.pre-commit-config.yaml index c429bfa..88d5c04 100644 --- a/.pre-commit-config.yaml +++ b/.pre-commit-config.yaml @@ -2,13 +2,13 @@ # See https://pre-commit.com/hooks.html for more hooks repos: - repo: https://github.com/pre-commit/pre-commit-hooks - rev: v2.0.0 + rev: v4.0.1 hooks: - id: trailing-whitespace - id: end-of-file-fixer - id: check-yaml - id: check-added-large-files - repo: https://github.com/psf/black - rev: 19.3b0 + rev: 21.7b0 hooks: - id: black From 2334435f6bab717e4179885d0e36867e8bc6bff7 Mon Sep 17 00:00:00 2001 From: "pre-commit-ci[bot]" <66853113+pre-commit-ci[bot]@users.noreply.github.com> Date: Mon, 30 Aug 2021 14:12:26 -0400 Subject: [PATCH 15/39] [pre-commit.ci] pre-commit autoupdate (#21) MIME-Version: 1.0 Content-Type: text/plain; charset=UTF-8 Content-Transfer-Encoding: 8bit updates: - [github.com/psf/black: 21.7b0 → 21.8b0](https://github.com/psf/black/compare/21.7b0...21.8b0) Co-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com> --- .pre-commit-config.yaml | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/.pre-commit-config.yaml b/.pre-commit-config.yaml index 88d5c04..f6ad424 100644 --- a/.pre-commit-config.yaml +++ b/.pre-commit-config.yaml @@ -9,6 +9,6 @@ repos: - id: check-yaml - id: check-added-large-files - repo: https://github.com/psf/black - rev: 21.7b0 + rev: 21.8b0 hooks: - id: black From d2ac4431d98fe8bb35e5123d12f7eb9c248a8597 Mon Sep 17 00:00:00 2001 From: "pre-commit-ci[bot]" <66853113+pre-commit-ci[bot]@users.noreply.github.com> Date: Mon, 22 Nov 2021 16:47:38 +0000 Subject: [PATCH 16/39] [pre-commit.ci] pre-commit autoupdate MIME-Version: 1.0 Content-Type: text/plain; charset=UTF-8 Content-Transfer-Encoding: 8bit updates: - [github.com/psf/black: 21.8b0 → 21.11b1](https://github.com/psf/black/compare/21.8b0...21.11b1) --- .pre-commit-config.yaml | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/.pre-commit-config.yaml b/.pre-commit-config.yaml index f6ad424..9d93beb 100644 --- a/.pre-commit-config.yaml +++ b/.pre-commit-config.yaml @@ -9,6 +9,6 @@ repos: - id: check-yaml - id: check-added-large-files - repo: https://github.com/psf/black - rev: 21.8b0 + rev: 21.11b1 hooks: - id: black From b01f48b259bb185ed31920e46a35d922ea2a2b30 Mon Sep 17 00:00:00 2001 From: "pre-commit-ci[bot]" <66853113+pre-commit-ci[bot]@users.noreply.github.com> Date: Mon, 27 Dec 2021 16:48:37 +0000 Subject: [PATCH 17/39] [pre-commit.ci] pre-commit autoupdate MIME-Version: 1.0 Content-Type: text/plain; charset=UTF-8 Content-Transfer-Encoding: 8bit updates: - [github.com/pre-commit/pre-commit-hooks: v4.0.1 → v4.1.0](https://github.com/pre-commit/pre-commit-hooks/compare/v4.0.1...v4.1.0) - [github.com/psf/black: 21.11b1 → 21.12b0](https://github.com/psf/black/compare/21.11b1...21.12b0) --- .pre-commit-config.yaml | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) diff --git a/.pre-commit-config.yaml b/.pre-commit-config.yaml index 9d93beb..3e07860 100644 --- a/.pre-commit-config.yaml +++ b/.pre-commit-config.yaml @@ -2,13 +2,13 @@ # See https://pre-commit.com/hooks.html for more hooks repos: - repo: https://github.com/pre-commit/pre-commit-hooks - rev: v4.0.1 + rev: v4.1.0 hooks: - id: trailing-whitespace - id: end-of-file-fixer - id: check-yaml - id: check-added-large-files - repo: https://github.com/psf/black - rev: 21.11b1 + rev: 21.12b0 hooks: - id: black From 5559012fb3f9315a7cdcb6883424e3eeab096709 Mon Sep 17 00:00:00 2001 From: "pre-commit-ci[bot]" <66853113+pre-commit-ci[bot]@users.noreply.github.com> Date: Mon, 31 Jan 2022 16:53:53 +0000 Subject: [PATCH 18/39] [pre-commit.ci] pre-commit autoupdate MIME-Version: 1.0 Content-Type: text/plain; charset=UTF-8 Content-Transfer-Encoding: 8bit updates: - [github.com/psf/black: 21.12b0 → 22.1.0](https://github.com/psf/black/compare/21.12b0...22.1.0) --- .pre-commit-config.yaml | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/.pre-commit-config.yaml b/.pre-commit-config.yaml index 3e07860..0a653f3 100644 --- a/.pre-commit-config.yaml +++ b/.pre-commit-config.yaml @@ -9,6 +9,6 @@ repos: - id: check-yaml - id: check-added-large-files - repo: https://github.com/psf/black - rev: 21.12b0 + rev: 22.1.0 hooks: - id: black From 847657800aec277a1d78e839e8797545206d3754 Mon Sep 17 00:00:00 2001 From: "pre-commit-ci[bot]" <66853113+pre-commit-ci[bot]@users.noreply.github.com> Date: Mon, 4 Apr 2022 16:57:08 +0000 Subject: [PATCH 19/39] [pre-commit.ci] pre-commit autoupdate MIME-Version: 1.0 Content-Type: text/plain; charset=UTF-8 Content-Transfer-Encoding: 8bit updates: - [github.com/psf/black: 22.1.0 → 22.3.0](https://github.com/psf/black/compare/22.1.0...22.3.0) --- .pre-commit-config.yaml | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/.pre-commit-config.yaml b/.pre-commit-config.yaml index 0a653f3..65b512e 100644 --- a/.pre-commit-config.yaml +++ b/.pre-commit-config.yaml @@ -9,6 +9,6 @@ repos: - id: check-yaml - id: check-added-large-files - repo: https://github.com/psf/black - rev: 22.1.0 + rev: 22.3.0 hooks: - id: black From 20a1f03f703b26f2c6a682a39bea068e0e785f5a Mon Sep 17 00:00:00 2001 From: "pre-commit-ci[bot]" <66853113+pre-commit-ci[bot]@users.noreply.github.com> Date: Mon, 13 Jun 2022 17:03:41 +0000 Subject: [PATCH 20/39] [pre-commit.ci] pre-commit autoupdate MIME-Version: 1.0 Content-Type: text/plain; charset=UTF-8 Content-Transfer-Encoding: 8bit updates: - [github.com/pre-commit/pre-commit-hooks: v4.1.0 → v4.3.0](https://github.com/pre-commit/pre-commit-hooks/compare/v4.1.0...v4.3.0) --- .pre-commit-config.yaml | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/.pre-commit-config.yaml b/.pre-commit-config.yaml index 65b512e..4e8eea6 100644 --- a/.pre-commit-config.yaml +++ b/.pre-commit-config.yaml @@ -2,7 +2,7 @@ # See https://pre-commit.com/hooks.html for more hooks repos: - repo: https://github.com/pre-commit/pre-commit-hooks - rev: v4.1.0 + rev: v4.3.0 hooks: - id: trailing-whitespace - id: end-of-file-fixer From 4ffd561cd390f3512943b736e81db9c0c9b38111 Mon Sep 17 00:00:00 2001 From: "pre-commit-ci[bot]" <66853113+pre-commit-ci[bot]@users.noreply.github.com> Date: Mon, 28 Nov 2022 17:28:35 +0000 Subject: [PATCH 21/39] [pre-commit.ci] pre-commit autoupdate MIME-Version: 1.0 Content-Type: text/plain; charset=UTF-8 Content-Transfer-Encoding: 8bit updates: - [github.com/pre-commit/pre-commit-hooks: v4.3.0 → v4.4.0](https://github.com/pre-commit/pre-commit-hooks/compare/v4.3.0...v4.4.0) - [github.com/psf/black: 22.3.0 → 22.10.0](https://github.com/psf/black/compare/22.3.0...22.10.0) --- .pre-commit-config.yaml | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) diff --git a/.pre-commit-config.yaml b/.pre-commit-config.yaml index 4e8eea6..e9251bb 100644 --- a/.pre-commit-config.yaml +++ b/.pre-commit-config.yaml @@ -2,13 +2,13 @@ # See https://pre-commit.com/hooks.html for more hooks repos: - repo: https://github.com/pre-commit/pre-commit-hooks - rev: v4.3.0 + rev: v4.4.0 hooks: - id: trailing-whitespace - id: end-of-file-fixer - id: check-yaml - id: check-added-large-files - repo: https://github.com/psf/black - rev: 22.3.0 + rev: 22.10.0 hooks: - id: black From a784b91e691338d6169742263dcd365463d8917a Mon Sep 17 00:00:00 2001 From: Ghislain Vaillant Date: Mon, 28 Nov 2022 23:34:52 +0100 Subject: [PATCH 22/39] MNT: Migrate project template to Flit --- .gitattributes | 1 - MANIFEST.in | 2 - codecov.yml | 2 - pydra/tasks/TODO/__init__.py | 8 +- pydra/tasks/TODO/_version.py | 561 ---------- pyproject.toml | 61 ++ setup.cfg | 67 -- setup.py | 23 - versioneer.py | 1917 ---------------------------------- 9 files changed, 65 insertions(+), 2577 deletions(-) delete mode 100644 .gitattributes delete mode 100644 MANIFEST.in delete mode 100644 pydra/tasks/TODO/_version.py create mode 100644 pyproject.toml delete mode 100644 setup.cfg delete mode 100755 setup.py delete mode 100644 versioneer.py diff --git a/.gitattributes b/.gitattributes deleted file mode 100644 index 85ad445..0000000 --- a/.gitattributes +++ /dev/null @@ -1 +0,0 @@ -pydra/tasks/TODO/_version.py export-subst diff --git a/MANIFEST.in b/MANIFEST.in deleted file mode 100644 index b3718cf..0000000 --- a/MANIFEST.in +++ /dev/null @@ -1,2 +0,0 @@ -include versioneer.py -include pydra/tasks/TODO/_version.py diff --git a/codecov.yml b/codecov.yml index bbf806c..a203b50 100644 --- a/codecov.yml +++ b/codecov.yml @@ -3,8 +3,6 @@ coverage: ignore: # files and folders that will be removed during processing - "**/tests" - "**/_version.py" - - "setup.py" - - "versioneer.py" status: project: default: diff --git a/pydra/tasks/TODO/__init__.py b/pydra/tasks/TODO/__init__.py index 573d3a8..5b9e250 100644 --- a/pydra/tasks/TODO/__init__.py +++ b/pydra/tasks/TODO/__init__.py @@ -5,7 +5,7 @@ >>> import pydra.engine >>> import pydra.tasks.TODO """ -from ._version import get_versions - -__version__ = get_versions()["version"] -del get_versions +try: + from ._version import __version__ +except ImportError: + pass diff --git a/pydra/tasks/TODO/_version.py b/pydra/tasks/TODO/_version.py deleted file mode 100644 index 2972046..0000000 --- a/pydra/tasks/TODO/_version.py +++ /dev/null @@ -1,561 +0,0 @@ -# This file helps to compute a version number in source trees obtained from -# git-archive tarball (such as those provided by githubs download-from-tag -# feature). Distribution tarballs (built by setup.py sdist) and build -# directories (produced by setup.py build) will contain a much shorter file -# that just contains the computed version number. - -# This file is released into the public domain. Generated by -# versioneer-0.19 (https://github.com/python-versioneer/python-versioneer) - -"""Git implementation of _version.py.""" - -import errno -import os -import re -import subprocess -import sys - - -def get_keywords(): - """Get the keywords needed to look up the version information.""" - # these strings will be replaced by git during git-archive. - # setup.py/versioneer.py will grep for the variable names, so they must - # each be defined on a line of their own. _version.py will just call - # get_keywords(). - git_refnames = "$Format:%d$" - git_full = "$Format:%H$" - git_date = "$Format:%ci$" - keywords = {"refnames": git_refnames, "full": git_full, "date": git_date} - return keywords - - -class VersioneerConfig: - """Container for Versioneer configuration parameters.""" - - -def get_config(): - """Create, populate and return the VersioneerConfig() object.""" - # these strings are filled in when 'setup.py versioneer' creates - # _version.py - cfg = VersioneerConfig() - cfg.VCS = "git" - cfg.style = "pep440" - cfg.tag_prefix = "" - cfg.parentdir_prefix = "" - cfg.versionfile_source = "pydra/tasks/TODO/_version.py" - cfg.verbose = False - return cfg - - -class NotThisMethod(Exception): - """Exception raised if a method is not valid for the current scenario.""" - - -LONG_VERSION_PY = {} -HANDLERS = {} - - -def register_vcs_handler(vcs, method): # decorator - """Create decorator to mark a method as the handler of a VCS.""" - - def decorate(f): - """Store f in HANDLERS[vcs][method].""" - if vcs not in HANDLERS: - HANDLERS[vcs] = {} - HANDLERS[vcs][method] = f - return f - - return decorate - - -def run_command(commands, args, cwd=None, verbose=False, hide_stderr=False, env=None): - """Call the given command(s).""" - assert isinstance(commands, list) - p = None - for c in commands: - try: - dispcmd = str([c] + args) - # remember shell=False, so use git.cmd on windows, not just git - p = subprocess.Popen( - [c] + args, - cwd=cwd, - env=env, - stdout=subprocess.PIPE, - stderr=(subprocess.PIPE if hide_stderr else None), - ) - break - except EnvironmentError: - e = sys.exc_info()[1] - if e.errno == errno.ENOENT: - continue - if verbose: - print("unable to run %s" % dispcmd) - print(e) - return None, None - else: - if verbose: - print("unable to find command, tried %s" % (commands,)) - return None, None - stdout = p.communicate()[0].strip().decode() - if p.returncode != 0: - if verbose: - print("unable to run %s (error)" % dispcmd) - print("stdout was %s" % stdout) - return None, p.returncode - return stdout, p.returncode - - -def versions_from_parentdir(parentdir_prefix, root, verbose): - """Try to determine the version from the parent directory name. - - Source tarballs conventionally unpack into a directory that includes both - the project name and a version string. We will also support searching up - two directory levels for an appropriately named parent directory - """ - rootdirs = [] - - for i in range(3): - dirname = os.path.basename(root) - if dirname.startswith(parentdir_prefix): - return { - "version": dirname[len(parentdir_prefix) :], - "full-revisionid": None, - "dirty": False, - "error": None, - "date": None, - } - else: - rootdirs.append(root) - root = os.path.dirname(root) # up a level - - if verbose: - print( - "Tried directories %s but none started with prefix %s" - % (str(rootdirs), parentdir_prefix) - ) - raise NotThisMethod("rootdir doesn't start with parentdir_prefix") - - -@register_vcs_handler("git", "get_keywords") -def git_get_keywords(versionfile_abs): - """Extract version information from the given file.""" - # the code embedded in _version.py can just fetch the value of these - # keywords. When used from setup.py, we don't want to import _version.py, - # so we do it with a regexp instead. This function is not used from - # _version.py. - keywords = {} - try: - f = open(versionfile_abs, "r") - for line in f.readlines(): - if line.strip().startswith("git_refnames ="): - mo = re.search(r'=\s*"(.*)"', line) - if mo: - keywords["refnames"] = mo.group(1) - if line.strip().startswith("git_full ="): - mo = re.search(r'=\s*"(.*)"', line) - if mo: - keywords["full"] = mo.group(1) - if line.strip().startswith("git_date ="): - mo = re.search(r'=\s*"(.*)"', line) - if mo: - keywords["date"] = mo.group(1) - f.close() - except EnvironmentError: - pass - return keywords - - -@register_vcs_handler("git", "keywords") -def git_versions_from_keywords(keywords, tag_prefix, verbose): - """Get version information from git keywords.""" - if not keywords: - raise NotThisMethod("no keywords at all, weird") - date = keywords.get("date") - if date is not None: - # Use only the last line. Previous lines may contain GPG signature - # information. - date = date.splitlines()[-1] - - # git-2.2.0 added "%cI", which expands to an ISO-8601 -compliant - # datestamp. However we prefer "%ci" (which expands to an "ISO-8601 - # -like" string, which we must then edit to make compliant), because - # it's been around since git-1.5.3, and it's too difficult to - # discover which version we're using, or to work around using an - # older one. - date = date.strip().replace(" ", "T", 1).replace(" ", "", 1) - refnames = keywords["refnames"].strip() - if refnames.startswith("$Format"): - if verbose: - print("keywords are unexpanded, not using") - raise NotThisMethod("unexpanded keywords, not a git-archive tarball") - refs = set([r.strip() for r in refnames.strip("()").split(",")]) - # starting in git-1.8.3, tags are listed as "tag: foo-1.0" instead of - # just "foo-1.0". If we see a "tag: " prefix, prefer those. - TAG = "tag: " - tags = set([r[len(TAG) :] for r in refs if r.startswith(TAG)]) - if not tags: - # Either we're using git < 1.8.3, or there really are no tags. We use - # a heuristic: assume all version tags have a digit. The old git %d - # expansion behaves like git log --decorate=short and strips out the - # refs/heads/ and refs/tags/ prefixes that would let us distinguish - # between branches and tags. By ignoring refnames without digits, we - # filter out many common branch names like "release" and - # "stabilization", as well as "HEAD" and "master". - tags = set([r for r in refs if re.search(r"\d", r)]) - if verbose: - print("discarding '%s', no digits" % ",".join(refs - tags)) - if verbose: - print("likely tags: %s" % ",".join(sorted(tags))) - for ref in sorted(tags): - # sorting will prefer e.g. "2.0" over "2.0rc1" - if ref.startswith(tag_prefix): - r = ref[len(tag_prefix) :] - if verbose: - print("picking %s" % r) - return { - "version": r, - "full-revisionid": keywords["full"].strip(), - "dirty": False, - "error": None, - "date": date, - } - # no suitable tags, so version is "0+unknown", but full hex is still there - if verbose: - print("no suitable tags, using unknown + full revision id") - return { - "version": "0+unknown", - "full-revisionid": keywords["full"].strip(), - "dirty": False, - "error": "no suitable tags", - "date": None, - } - - -@register_vcs_handler("git", "pieces_from_vcs") -def git_pieces_from_vcs(tag_prefix, root, verbose, run_command=run_command): - """Get version from 'git describe' in the root of the source tree. - - This only gets called if the git-archive 'subst' keywords were *not* - expanded, and _version.py hasn't already been rewritten with a short - version string, meaning we're inside a checked out source tree. - """ - GITS = ["git"] - if sys.platform == "win32": - GITS = ["git.cmd", "git.exe"] - - out, rc = run_command(GITS, ["rev-parse", "--git-dir"], cwd=root, hide_stderr=True) - if rc != 0: - if verbose: - print("Directory %s not under git control" % root) - raise NotThisMethod("'git rev-parse --git-dir' returned error") - - # if there is a tag matching tag_prefix, this yields TAG-NUM-gHEX[-dirty] - # if there isn't one, this yields HEX[-dirty] (no NUM) - describe_out, rc = run_command( - GITS, - [ - "describe", - "--tags", - "--dirty", - "--always", - "--long", - "--match", - "%s*" % tag_prefix, - ], - cwd=root, - ) - # --long was added in git-1.5.5 - if describe_out is None: - raise NotThisMethod("'git describe' failed") - describe_out = describe_out.strip() - full_out, rc = run_command(GITS, ["rev-parse", "HEAD"], cwd=root) - if full_out is None: - raise NotThisMethod("'git rev-parse' failed") - full_out = full_out.strip() - - pieces = {} - pieces["long"] = full_out - pieces["short"] = full_out[:7] # maybe improved later - pieces["error"] = None - - # parse describe_out. It will be like TAG-NUM-gHEX[-dirty] or HEX[-dirty] - # TAG might have hyphens. - git_describe = describe_out - - # look for -dirty suffix - dirty = git_describe.endswith("-dirty") - pieces["dirty"] = dirty - if dirty: - git_describe = git_describe[: git_describe.rindex("-dirty")] - - # now we have TAG-NUM-gHEX or HEX - - if "-" in git_describe: - # TAG-NUM-gHEX - mo = re.search(r"^(.+)-(\d+)-g([0-9a-f]+)$", git_describe) - if not mo: - # unparseable. Maybe git-describe is misbehaving? - pieces["error"] = "unable to parse git-describe output: '%s'" % describe_out - return pieces - - # tag - full_tag = mo.group(1) - if not full_tag.startswith(tag_prefix): - if verbose: - fmt = "tag '%s' doesn't start with prefix '%s'" - print(fmt % (full_tag, tag_prefix)) - pieces["error"] = "tag '%s' doesn't start with prefix '%s'" % ( - full_tag, - tag_prefix, - ) - return pieces - pieces["closest-tag"] = full_tag[len(tag_prefix) :] - - # distance: number of commits since tag - pieces["distance"] = int(mo.group(2)) - - # commit: short hex revision ID - pieces["short"] = mo.group(3) - - else: - # HEX: no tags - pieces["closest-tag"] = None - count_out, rc = run_command(GITS, ["rev-list", "HEAD", "--count"], cwd=root) - pieces["distance"] = int(count_out) # total number of commits - - # commit date: see ISO-8601 comment in git_versions_from_keywords() - date = run_command(GITS, ["show", "-s", "--format=%ci", "HEAD"], cwd=root)[ - 0 - ].strip() - # Use only the last line. Previous lines may contain GPG signature - # information. - date = date.splitlines()[-1] - pieces["date"] = date.strip().replace(" ", "T", 1).replace(" ", "", 1) - - return pieces - - -def plus_or_dot(pieces): - """Return a + if we don't already have one, else return a .""" - if "+" in pieces.get("closest-tag", ""): - return "." - return "+" - - -def render_pep440(pieces): - """Build up version string, with post-release "local version identifier". - - Our goal: TAG[+DISTANCE.gHEX[.dirty]] . Note that if you - get a tagged build and then dirty it, you'll get TAG+0.gHEX.dirty - - Exceptions: - 1: no tags. git_describe was just HEX. 0+untagged.DISTANCE.gHEX[.dirty] - """ - if pieces["closest-tag"]: - rendered = pieces["closest-tag"] - if pieces["distance"] or pieces["dirty"]: - rendered += plus_or_dot(pieces) - rendered += "%d.g%s" % (pieces["distance"], pieces["short"]) - if pieces["dirty"]: - rendered += ".dirty" - else: - # exception #1 - rendered = "0+untagged.%d.g%s" % (pieces["distance"], pieces["short"]) - if pieces["dirty"]: - rendered += ".dirty" - return rendered - - -def render_pep440_pre(pieces): - """TAG[.post0.devDISTANCE] -- No -dirty. - - Exceptions: - 1: no tags. 0.post0.devDISTANCE - """ - if pieces["closest-tag"]: - rendered = pieces["closest-tag"] - if pieces["distance"]: - rendered += ".post0.dev%d" % pieces["distance"] - else: - # exception #1 - rendered = "0.post0.dev%d" % pieces["distance"] - return rendered - - -def render_pep440_post(pieces): - """TAG[.postDISTANCE[.dev0]+gHEX] . - - The ".dev0" means dirty. Note that .dev0 sorts backwards - (a dirty tree will appear "older" than the corresponding clean one), - but you shouldn't be releasing software with -dirty anyways. - - Exceptions: - 1: no tags. 0.postDISTANCE[.dev0] - """ - if pieces["closest-tag"]: - rendered = pieces["closest-tag"] - if pieces["distance"] or pieces["dirty"]: - rendered += ".post%d" % pieces["distance"] - if pieces["dirty"]: - rendered += ".dev0" - rendered += plus_or_dot(pieces) - rendered += "g%s" % pieces["short"] - else: - # exception #1 - rendered = "0.post%d" % pieces["distance"] - if pieces["dirty"]: - rendered += ".dev0" - rendered += "+g%s" % pieces["short"] - return rendered - - -def render_pep440_old(pieces): - """TAG[.postDISTANCE[.dev0]] . - - The ".dev0" means dirty. - - Exceptions: - 1: no tags. 0.postDISTANCE[.dev0] - """ - if pieces["closest-tag"]: - rendered = pieces["closest-tag"] - if pieces["distance"] or pieces["dirty"]: - rendered += ".post%d" % pieces["distance"] - if pieces["dirty"]: - rendered += ".dev0" - else: - # exception #1 - rendered = "0.post%d" % pieces["distance"] - if pieces["dirty"]: - rendered += ".dev0" - return rendered - - -def render_git_describe(pieces): - """TAG[-DISTANCE-gHEX][-dirty]. - - Like 'git describe --tags --dirty --always'. - - Exceptions: - 1: no tags. HEX[-dirty] (note: no 'g' prefix) - """ - if pieces["closest-tag"]: - rendered = pieces["closest-tag"] - if pieces["distance"]: - rendered += "-%d-g%s" % (pieces["distance"], pieces["short"]) - else: - # exception #1 - rendered = pieces["short"] - if pieces["dirty"]: - rendered += "-dirty" - return rendered - - -def render_git_describe_long(pieces): - """TAG-DISTANCE-gHEX[-dirty]. - - Like 'git describe --tags --dirty --always -long'. - The distance/hash is unconditional. - - Exceptions: - 1: no tags. HEX[-dirty] (note: no 'g' prefix) - """ - if pieces["closest-tag"]: - rendered = pieces["closest-tag"] - rendered += "-%d-g%s" % (pieces["distance"], pieces["short"]) - else: - # exception #1 - rendered = pieces["short"] - if pieces["dirty"]: - rendered += "-dirty" - return rendered - - -def render(pieces, style): - """Render the given version pieces into the requested style.""" - if pieces["error"]: - return { - "version": "unknown", - "full-revisionid": pieces.get("long"), - "dirty": None, - "error": pieces["error"], - "date": None, - } - - if not style or style == "default": - style = "pep440" # the default - - if style == "pep440": - rendered = render_pep440(pieces) - elif style == "pep440-pre": - rendered = render_pep440_pre(pieces) - elif style == "pep440-post": - rendered = render_pep440_post(pieces) - elif style == "pep440-old": - rendered = render_pep440_old(pieces) - elif style == "git-describe": - rendered = render_git_describe(pieces) - elif style == "git-describe-long": - rendered = render_git_describe_long(pieces) - else: - raise ValueError("unknown style '%s'" % style) - - return { - "version": rendered, - "full-revisionid": pieces["long"], - "dirty": pieces["dirty"], - "error": None, - "date": pieces.get("date"), - } - - -def get_versions(): - """Get version information or return default if unable to do so.""" - # I am in _version.py, which lives at ROOT/VERSIONFILE_SOURCE. If we have - # __file__, we can work backwards from there to the root. Some - # py2exe/bbfreeze/non-CPython implementations don't do __file__, in which - # case we can only use expanded keywords. - - cfg = get_config() - verbose = cfg.verbose - - try: - return git_versions_from_keywords(get_keywords(), cfg.tag_prefix, verbose) - except NotThisMethod: - pass - - try: - root = os.path.realpath(__file__) - # versionfile_source is the relative path from the top of the source - # tree (where the .git directory might live) to this file. Invert - # this to find the root from __file__. - for i in cfg.versionfile_source.split("/"): - root = os.path.dirname(root) - except NameError: - return { - "version": "0+unknown", - "full-revisionid": None, - "dirty": None, - "error": "unable to find root of source tree", - "date": None, - } - - try: - pieces = git_pieces_from_vcs(cfg.tag_prefix, root, verbose) - return render(pieces, cfg.style) - except NotThisMethod: - pass - - try: - if cfg.parentdir_prefix: - return versions_from_parentdir(cfg.parentdir_prefix, root, verbose) - except NotThisMethod: - pass - - return { - "version": "0+unknown", - "full-revisionid": None, - "dirty": None, - "error": "unable to compute version", - "date": None, - } diff --git a/pyproject.toml b/pyproject.toml new file mode 100644 index 0000000..2d1b65f --- /dev/null +++ b/pyproject.toml @@ -0,0 +1,61 @@ +[build-system] +requires = ["flit_scm"] +build-backend = "flit_scm:buildapi" + +[project] +name = "pydra-tasks-TODO" +description = "Description for pydra-tasks-TODO" +readme = "README.md" +requires-python = ">=3.7" +dependencies = ["pydra >=0.20"] +license = {file = "LICENSE"} +authors = [{name = "Nipype developers", email = "neuroimaging@python.org"}] +maintainers = [{name = "Nipype developers", email = "neuroimaging@python.org"}] +keywords = ["pydra"] +classifiers = [ + "Development Status :: 2 - Pre-Alpha", + "Environment :: Console", + "Intended Audience :: Science/Research", + "License :: OSI Approved :: Apache Software License", + "Operating System :: MacOS :: MacOS X", + "Operating System :: POSIX :: Linux", + "Programming Language :: Python :: 3", + "Topic :: Scientific/Engineering", +] +dynamic = ["version"] + +[project.optional-dependencies] +dev = [ + "black", + "pre-commit", +] +doc = [ + "packaging", + "sphinx >=2.1.2", + "sphinx_rtd_theme", + "sphinxcontrib-apidoc ~=0.3.0", + "sphinxcontrib-napoleon", + "sphinxcontrib-versioning", +] +test = [ + "pytest >= 4.4.0", + "pytest-cov", + "pytest-env", + "pytest-xdist", + "pytest-rerunfailures", + "codecov", +] + +[tool.flit.module] +name = "pydra.tasks.TODO" + +[tool.flit.sdist] +exclude = [".gitignore"] + +[tool.setuptools_scm] +write_to = "pydra/tasks/TODO/_version.py" + +[tool.black] +line-length = 99 +target-version = ["py37"] +exclude = "_version.py" diff --git a/setup.cfg b/setup.cfg deleted file mode 100644 index 5dd65f6..0000000 --- a/setup.cfg +++ /dev/null @@ -1,67 +0,0 @@ -[DEFAULT] -subpackage = TODO - -[metadata] -author = TODO -author_email = TODO -description = TODO -long_description = file:README.md -long_description_content_type = text/markdown; variant=CommonMark -license = Apache License, 2.0 -classifiers = - Development Status :: 2 - Pre-Alpha - Environment :: Console - Intended Audience :: Science/Research - License :: OSI Approved :: Apache Software License - Operating System :: MacOS :: MacOS X - Operating System :: POSIX :: Linux - Programming Language :: Python :: 3.7 - Programming Language :: Python :: 3.8 - Programming Language :: Python :: 3.9 - Topic :: Scientific/Engineering - -[options] -python_requires = >=3.7 -install_requires = - pydra >= 0.6.2 -packages = find_namespace: - -[options.packages.find] -include = - pydra.tasks.%(subpackage)s - pydra.tasks.%(subpackage)s.* - -[options.extras_require] -doc = - packaging - sphinx >= 2.1.2 - sphinx_rtd_theme - sphinxcontrib-apidoc ~= 0.3.0 - sphinxcontrib-napoleon - sphinxcontrib-versioning -docs = - %(doc)s -test = - pytest >= 4.4.0 - pytest-cov - pytest-env - pytest-xdist - pytest-rerunfailures - codecov -tests = - %(test)s -dev = - %(test)s - black - pre-commit -all = - %(doc)s - %(dev)s - -[versioneer] -VCS = git -style = pep440 -versionfile_source = pydra/tasks/%(subpackage)s/_version.py -versionfile_build = pydra/tasks/%(subpackage)s/_version.py -tag_prefix = -parentdir_prefix = diff --git a/setup.py b/setup.py deleted file mode 100755 index 9faa522..0000000 --- a/setup.py +++ /dev/null @@ -1,23 +0,0 @@ -#!/usr/bin/env python -import sys - -from setuptools import setup -import versioneer - -SUBPACKAGE = "TODO" - -# Give setuptools a hint to complain if it's too old a version -# 30.3.0 allows us to put most metadata in setup.cfg -# 40.1.0 enables the `find_namespace:` directive -# Should match pyproject.toml -SETUP_REQUIRES = ["setuptools >= 40.1.0"] -# This enables setuptools to install wheel on-the-fly -SETUP_REQUIRES += ["wheel"] if "bdist_wheel" in sys.argv else [] - -if __name__ == "__main__": - setup( - name=f"pydra-{SUBPACKAGE}", - setup_requires=SETUP_REQUIRES, - version=versioneer.get_version(), - cmdclass=versioneer.get_cmdclass(), - ) diff --git a/versioneer.py b/versioneer.py deleted file mode 100644 index d5e0eb5..0000000 --- a/versioneer.py +++ /dev/null @@ -1,1917 +0,0 @@ -# Version: 0.19 - -"""The Versioneer - like a rocketeer, but for versions. - -The Versioneer -============== - -* like a rocketeer, but for versions! -* https://github.com/python-versioneer/python-versioneer -* Brian Warner -* License: Public Domain -* Compatible with: Python 3.6, 3.7, 3.8, 3.9 and pypy3 -* [![Latest Version][pypi-image]][pypi-url] -* [![Build Status][travis-image]][travis-url] - -This is a tool for managing a recorded version number in distutils-based -python projects. The goal is to remove the tedious and error-prone "update -the embedded version string" step from your release process. Making a new -release should be as easy as recording a new tag in your version-control -system, and maybe making new tarballs. - - -## Quick Install - -* `pip install versioneer` to somewhere in your $PATH -* add a `[versioneer]` section to your setup.cfg (see [Install](INSTALL.md)) -* run `versioneer install` in your source tree, commit the results -* Verify version information with `python setup.py version` - -## Version Identifiers - -Source trees come from a variety of places: - -* a version-control system checkout (mostly used by developers) -* a nightly tarball, produced by build automation -* a snapshot tarball, produced by a web-based VCS browser, like github's - "tarball from tag" feature -* a release tarball, produced by "setup.py sdist", distributed through PyPI - -Within each source tree, the version identifier (either a string or a number, -this tool is format-agnostic) can come from a variety of places: - -* ask the VCS tool itself, e.g. "git describe" (for checkouts), which knows - about recent "tags" and an absolute revision-id -* the name of the directory into which the tarball was unpacked -* an expanded VCS keyword ($Id$, etc) -* a `_version.py` created by some earlier build step - -For released software, the version identifier is closely related to a VCS -tag. Some projects use tag names that include more than just the version -string (e.g. "myproject-1.2" instead of just "1.2"), in which case the tool -needs to strip the tag prefix to extract the version identifier. For -unreleased software (between tags), the version identifier should provide -enough information to help developers recreate the same tree, while also -giving them an idea of roughly how old the tree is (after version 1.2, before -version 1.3). Many VCS systems can report a description that captures this, -for example `git describe --tags --dirty --always` reports things like -"0.7-1-g574ab98-dirty" to indicate that the checkout is one revision past the -0.7 tag, has a unique revision id of "574ab98", and is "dirty" (it has -uncommitted changes). - -The version identifier is used for multiple purposes: - -* to allow the module to self-identify its version: `myproject.__version__` -* to choose a name and prefix for a 'setup.py sdist' tarball - -## Theory of Operation - -Versioneer works by adding a special `_version.py` file into your source -tree, where your `__init__.py` can import it. This `_version.py` knows how to -dynamically ask the VCS tool for version information at import time. - -`_version.py` also contains `$Revision$` markers, and the installation -process marks `_version.py` to have this marker rewritten with a tag name -during the `git archive` command. As a result, generated tarballs will -contain enough information to get the proper version. - -To allow `setup.py` to compute a version too, a `versioneer.py` is added to -the top level of your source tree, next to `setup.py` and the `setup.cfg` -that configures it. This overrides several distutils/setuptools commands to -compute the version when invoked, and changes `setup.py build` and `setup.py -sdist` to replace `_version.py` with a small static file that contains just -the generated version data. - -## Installation - -See [INSTALL.md](./INSTALL.md) for detailed installation instructions. - -## Version-String Flavors - -Code which uses Versioneer can learn about its version string at runtime by -importing `_version` from your main `__init__.py` file and running the -`get_versions()` function. From the "outside" (e.g. in `setup.py`), you can -import the top-level `versioneer.py` and run `get_versions()`. - -Both functions return a dictionary with different flavors of version -information: - -* `['version']`: A condensed version string, rendered using the selected - style. This is the most commonly used value for the project's version - string. The default "pep440" style yields strings like `0.11`, - `0.11+2.g1076c97`, or `0.11+2.g1076c97.dirty`. See the "Styles" section - below for alternative styles. - -* `['full-revisionid']`: detailed revision identifier. For Git, this is the - full SHA1 commit id, e.g. "1076c978a8d3cfc70f408fe5974aa6c092c949ac". - -* `['date']`: Date and time of the latest `HEAD` commit. For Git, it is the - commit date in ISO 8601 format. This will be None if the date is not - available. - -* `['dirty']`: a boolean, True if the tree has uncommitted changes. Note that - this is only accurate if run in a VCS checkout, otherwise it is likely to - be False or None - -* `['error']`: if the version string could not be computed, this will be set - to a string describing the problem, otherwise it will be None. It may be - useful to throw an exception in setup.py if this is set, to avoid e.g. - creating tarballs with a version string of "unknown". - -Some variants are more useful than others. Including `full-revisionid` in a -bug report should allow developers to reconstruct the exact code being tested -(or indicate the presence of local changes that should be shared with the -developers). `version` is suitable for display in an "about" box or a CLI -`--version` output: it can be easily compared against release notes and lists -of bugs fixed in various releases. - -The installer adds the following text to your `__init__.py` to place a basic -version in `YOURPROJECT.__version__`: - - from ._version import get_versions - __version__ = get_versions()['version'] - del get_versions - -## Styles - -The setup.cfg `style=` configuration controls how the VCS information is -rendered into a version string. - -The default style, "pep440", produces a PEP440-compliant string, equal to the -un-prefixed tag name for actual releases, and containing an additional "local -version" section with more detail for in-between builds. For Git, this is -TAG[+DISTANCE.gHEX[.dirty]] , using information from `git describe --tags ---dirty --always`. For example "0.11+2.g1076c97.dirty" indicates that the -tree is like the "1076c97" commit but has uncommitted changes (".dirty"), and -that this commit is two revisions ("+2") beyond the "0.11" tag. For released -software (exactly equal to a known tag), the identifier will only contain the -stripped tag, e.g. "0.11". - -Other styles are available. See [details.md](details.md) in the Versioneer -source tree for descriptions. - -## Debugging - -Versioneer tries to avoid fatal errors: if something goes wrong, it will tend -to return a version of "0+unknown". To investigate the problem, run `setup.py -version`, which will run the version-lookup code in a verbose mode, and will -display the full contents of `get_versions()` (including the `error` string, -which may help identify what went wrong). - -## Known Limitations - -Some situations are known to cause problems for Versioneer. This details the -most significant ones. More can be found on Github -[issues page](https://github.com/python-versioneer/python-versioneer/issues). - -### Subprojects - -Versioneer has limited support for source trees in which `setup.py` is not in -the root directory (e.g. `setup.py` and `.git/` are *not* siblings). The are -two common reasons why `setup.py` might not be in the root: - -* Source trees which contain multiple subprojects, such as - [Buildbot](https://github.com/buildbot/buildbot), which contains both - "master" and "slave" subprojects, each with their own `setup.py`, - `setup.cfg`, and `tox.ini`. Projects like these produce multiple PyPI - distributions (and upload multiple independently-installable tarballs). -* Source trees whose main purpose is to contain a C library, but which also - provide bindings to Python (and perhaps other languages) in subdirectories. - -Versioneer will look for `.git` in parent directories, and most operations -should get the right version string. However `pip` and `setuptools` have bugs -and implementation details which frequently cause `pip install .` from a -subproject directory to fail to find a correct version string (so it usually -defaults to `0+unknown`). - -`pip install --editable .` should work correctly. `setup.py install` might -work too. - -Pip-8.1.1 is known to have this problem, but hopefully it will get fixed in -some later version. - -[Bug #38](https://github.com/python-versioneer/python-versioneer/issues/38) is tracking -this issue. The discussion in -[PR #61](https://github.com/python-versioneer/python-versioneer/pull/61) describes the -issue from the Versioneer side in more detail. -[pip PR#3176](https://github.com/pypa/pip/pull/3176) and -[pip PR#3615](https://github.com/pypa/pip/pull/3615) contain work to improve -pip to let Versioneer work correctly. - -Versioneer-0.16 and earlier only looked for a `.git` directory next to the -`setup.cfg`, so subprojects were completely unsupported with those releases. - -### Editable installs with setuptools <= 18.5 - -`setup.py develop` and `pip install --editable .` allow you to install a -project into a virtualenv once, then continue editing the source code (and -test) without re-installing after every change. - -"Entry-point scripts" (`setup(entry_points={"console_scripts": ..})`) are a -convenient way to specify executable scripts that should be installed along -with the python package. - -These both work as expected when using modern setuptools. When using -setuptools-18.5 or earlier, however, certain operations will cause -`pkg_resources.DistributionNotFound` errors when running the entrypoint -script, which must be resolved by re-installing the package. This happens -when the install happens with one version, then the egg_info data is -regenerated while a different version is checked out. Many setup.py commands -cause egg_info to be rebuilt (including `sdist`, `wheel`, and installing into -a different virtualenv), so this can be surprising. - -[Bug #83](https://github.com/python-versioneer/python-versioneer/issues/83) describes -this one, but upgrading to a newer version of setuptools should probably -resolve it. - - -## Updating Versioneer - -To upgrade your project to a new release of Versioneer, do the following: - -* install the new Versioneer (`pip install -U versioneer` or equivalent) -* edit `setup.cfg`, if necessary, to include any new configuration settings - indicated by the release notes. See [UPGRADING](./UPGRADING.md) for details. -* re-run `versioneer install` in your source tree, to replace - `SRC/_version.py` -* commit any changed files - -## Future Directions - -This tool is designed to make it easily extended to other version-control -systems: all VCS-specific components are in separate directories like -src/git/ . The top-level `versioneer.py` script is assembled from these -components by running make-versioneer.py . In the future, make-versioneer.py -will take a VCS name as an argument, and will construct a version of -`versioneer.py` that is specific to the given VCS. It might also take the -configuration arguments that are currently provided manually during -installation by editing setup.py . Alternatively, it might go the other -direction and include code from all supported VCS systems, reducing the -number of intermediate scripts. - -## Similar projects - -* [setuptools_scm](https://github.com/pypa/setuptools_scm/) - a non-vendored build-time - dependency -* [minver](https://github.com/jbweston/miniver) - a lightweight reimplementation of - versioneer - -## License - -To make Versioneer easier to embed, all its code is dedicated to the public -domain. The `_version.py` that it creates is also in the public domain. -Specifically, both are released under the Creative Commons "Public Domain -Dedication" license (CC0-1.0), as described in -https://creativecommons.org/publicdomain/zero/1.0/ . - -[pypi-image]: https://img.shields.io/pypi/v/versioneer.svg -[pypi-url]: https://pypi.python.org/pypi/versioneer/ -[travis-image]: -https://img.shields.io/travis/com/python-versioneer/python-versioneer.svg -[travis-url]: https://travis-ci.com/github/python-versioneer/python-versioneer - -""" - -import configparser -import errno -import json -import os -import re -import subprocess -import sys - - -class VersioneerConfig: - """Container for Versioneer configuration parameters.""" - - -def get_root(): - """Get the project root directory. - - We require that all commands are run from the project root, i.e. the - directory that contains setup.py, setup.cfg, and versioneer.py . - """ - root = os.path.realpath(os.path.abspath(os.getcwd())) - setup_py = os.path.join(root, "setup.py") - versioneer_py = os.path.join(root, "versioneer.py") - if not (os.path.exists(setup_py) or os.path.exists(versioneer_py)): - # allow 'python path/to/setup.py COMMAND' - root = os.path.dirname(os.path.realpath(os.path.abspath(sys.argv[0]))) - setup_py = os.path.join(root, "setup.py") - versioneer_py = os.path.join(root, "versioneer.py") - if not (os.path.exists(setup_py) or os.path.exists(versioneer_py)): - err = ( - "Versioneer was unable to run the project root directory. " - "Versioneer requires setup.py to be executed from " - "its immediate directory (like 'python setup.py COMMAND'), " - "or in a way that lets it use sys.argv[0] to find the root " - "(like 'python path/to/setup.py COMMAND')." - ) - raise VersioneerBadRootError(err) - try: - # Certain runtime workflows (setup.py install/develop in a setuptools - # tree) execute all dependencies in a single python process, so - # "versioneer" may be imported multiple times, and python's shared - # module-import table will cache the first one. So we can't use - # os.path.dirname(__file__), as that will find whichever - # versioneer.py was first imported, even in later projects. - me = os.path.realpath(os.path.abspath(__file__)) - me_dir = os.path.normcase(os.path.splitext(me)[0]) - vsr_dir = os.path.normcase(os.path.splitext(versioneer_py)[0]) - if me_dir != vsr_dir: - print( - "Warning: build in %s is using versioneer.py from %s" - % (os.path.dirname(me), versioneer_py) - ) - except NameError: - pass - return root - - -def get_config_from_root(root): - """Read the project setup.cfg file to determine Versioneer config.""" - # This might raise EnvironmentError (if setup.cfg is missing), or - # configparser.NoSectionError (if it lacks a [versioneer] section), or - # configparser.NoOptionError (if it lacks "VCS="). See the docstring at - # the top of versioneer.py for instructions on writing your setup.cfg . - setup_cfg = os.path.join(root, "setup.cfg") - parser = configparser.ConfigParser() - with open(setup_cfg, "r") as f: - parser.read_file(f) - VCS = parser.get("versioneer", "VCS") # mandatory - - def get(parser, name): - if parser.has_option("versioneer", name): - return parser.get("versioneer", name) - return None - - cfg = VersioneerConfig() - cfg.VCS = VCS - cfg.style = get(parser, "style") or "" - cfg.versionfile_source = get(parser, "versionfile_source") - cfg.versionfile_build = get(parser, "versionfile_build") - cfg.tag_prefix = get(parser, "tag_prefix") - if cfg.tag_prefix in ("''", '""'): - cfg.tag_prefix = "" - cfg.parentdir_prefix = get(parser, "parentdir_prefix") - cfg.verbose = get(parser, "verbose") - return cfg - - -class NotThisMethod(Exception): - """Exception raised if a method is not valid for the current scenario.""" - - -# these dictionaries contain VCS-specific tools -LONG_VERSION_PY = {} -HANDLERS = {} - - -def register_vcs_handler(vcs, method): # decorator - """Create decorator to mark a method as the handler of a VCS.""" - - def decorate(f): - """Store f in HANDLERS[vcs][method].""" - if vcs not in HANDLERS: - HANDLERS[vcs] = {} - HANDLERS[vcs][method] = f - return f - - return decorate - - -def run_command(commands, args, cwd=None, verbose=False, hide_stderr=False, env=None): - """Call the given command(s).""" - assert isinstance(commands, list) - p = None - for c in commands: - try: - dispcmd = str([c] + args) - # remember shell=False, so use git.cmd on windows, not just git - p = subprocess.Popen( - [c] + args, - cwd=cwd, - env=env, - stdout=subprocess.PIPE, - stderr=(subprocess.PIPE if hide_stderr else None), - ) - break - except EnvironmentError: - e = sys.exc_info()[1] - if e.errno == errno.ENOENT: - continue - if verbose: - print("unable to run %s" % dispcmd) - print(e) - return None, None - else: - if verbose: - print("unable to find command, tried %s" % (commands,)) - return None, None - stdout = p.communicate()[0].strip().decode() - if p.returncode != 0: - if verbose: - print("unable to run %s (error)" % dispcmd) - print("stdout was %s" % stdout) - return None, p.returncode - return stdout, p.returncode - - -LONG_VERSION_PY[ - "git" -] = r''' -# This file helps to compute a version number in source trees obtained from -# git-archive tarball (such as those provided by githubs download-from-tag -# feature). Distribution tarballs (built by setup.py sdist) and build -# directories (produced by setup.py build) will contain a much shorter file -# that just contains the computed version number. - -# This file is released into the public domain. Generated by -# versioneer-0.19 (https://github.com/python-versioneer/python-versioneer) - -"""Git implementation of _version.py.""" - -import errno -import os -import re -import subprocess -import sys - - -def get_keywords(): - """Get the keywords needed to look up the version information.""" - # these strings will be replaced by git during git-archive. - # setup.py/versioneer.py will grep for the variable names, so they must - # each be defined on a line of their own. _version.py will just call - # get_keywords(). - git_refnames = "%(DOLLAR)sFormat:%%d%(DOLLAR)s" - git_full = "%(DOLLAR)sFormat:%%H%(DOLLAR)s" - git_date = "%(DOLLAR)sFormat:%%ci%(DOLLAR)s" - keywords = {"refnames": git_refnames, "full": git_full, "date": git_date} - return keywords - - -class VersioneerConfig: - """Container for Versioneer configuration parameters.""" - - -def get_config(): - """Create, populate and return the VersioneerConfig() object.""" - # these strings are filled in when 'setup.py versioneer' creates - # _version.py - cfg = VersioneerConfig() - cfg.VCS = "git" - cfg.style = "%(STYLE)s" - cfg.tag_prefix = "%(TAG_PREFIX)s" - cfg.parentdir_prefix = "%(PARENTDIR_PREFIX)s" - cfg.versionfile_source = "%(VERSIONFILE_SOURCE)s" - cfg.verbose = False - return cfg - - -class NotThisMethod(Exception): - """Exception raised if a method is not valid for the current scenario.""" - - -LONG_VERSION_PY = {} -HANDLERS = {} - - -def register_vcs_handler(vcs, method): # decorator - """Create decorator to mark a method as the handler of a VCS.""" - def decorate(f): - """Store f in HANDLERS[vcs][method].""" - if vcs not in HANDLERS: - HANDLERS[vcs] = {} - HANDLERS[vcs][method] = f - return f - return decorate - - -def run_command(commands, args, cwd=None, verbose=False, hide_stderr=False, - env=None): - """Call the given command(s).""" - assert isinstance(commands, list) - p = None - for c in commands: - try: - dispcmd = str([c] + args) - # remember shell=False, so use git.cmd on windows, not just git - p = subprocess.Popen([c] + args, cwd=cwd, env=env, - stdout=subprocess.PIPE, - stderr=(subprocess.PIPE if hide_stderr - else None)) - break - except EnvironmentError: - e = sys.exc_info()[1] - if e.errno == errno.ENOENT: - continue - if verbose: - print("unable to run %%s" %% dispcmd) - print(e) - return None, None - else: - if verbose: - print("unable to find command, tried %%s" %% (commands,)) - return None, None - stdout = p.communicate()[0].strip().decode() - if p.returncode != 0: - if verbose: - print("unable to run %%s (error)" %% dispcmd) - print("stdout was %%s" %% stdout) - return None, p.returncode - return stdout, p.returncode - - -def versions_from_parentdir(parentdir_prefix, root, verbose): - """Try to determine the version from the parent directory name. - - Source tarballs conventionally unpack into a directory that includes both - the project name and a version string. We will also support searching up - two directory levels for an appropriately named parent directory - """ - rootdirs = [] - - for i in range(3): - dirname = os.path.basename(root) - if dirname.startswith(parentdir_prefix): - return {"version": dirname[len(parentdir_prefix):], - "full-revisionid": None, - "dirty": False, "error": None, "date": None} - else: - rootdirs.append(root) - root = os.path.dirname(root) # up a level - - if verbose: - print("Tried directories %%s but none started with prefix %%s" %% - (str(rootdirs), parentdir_prefix)) - raise NotThisMethod("rootdir doesn't start with parentdir_prefix") - - -@register_vcs_handler("git", "get_keywords") -def git_get_keywords(versionfile_abs): - """Extract version information from the given file.""" - # the code embedded in _version.py can just fetch the value of these - # keywords. When used from setup.py, we don't want to import _version.py, - # so we do it with a regexp instead. This function is not used from - # _version.py. - keywords = {} - try: - f = open(versionfile_abs, "r") - for line in f.readlines(): - if line.strip().startswith("git_refnames ="): - mo = re.search(r'=\s*"(.*)"', line) - if mo: - keywords["refnames"] = mo.group(1) - if line.strip().startswith("git_full ="): - mo = re.search(r'=\s*"(.*)"', line) - if mo: - keywords["full"] = mo.group(1) - if line.strip().startswith("git_date ="): - mo = re.search(r'=\s*"(.*)"', line) - if mo: - keywords["date"] = mo.group(1) - f.close() - except EnvironmentError: - pass - return keywords - - -@register_vcs_handler("git", "keywords") -def git_versions_from_keywords(keywords, tag_prefix, verbose): - """Get version information from git keywords.""" - if not keywords: - raise NotThisMethod("no keywords at all, weird") - date = keywords.get("date") - if date is not None: - # Use only the last line. Previous lines may contain GPG signature - # information. - date = date.splitlines()[-1] - - # git-2.2.0 added "%%cI", which expands to an ISO-8601 -compliant - # datestamp. However we prefer "%%ci" (which expands to an "ISO-8601 - # -like" string, which we must then edit to make compliant), because - # it's been around since git-1.5.3, and it's too difficult to - # discover which version we're using, or to work around using an - # older one. - date = date.strip().replace(" ", "T", 1).replace(" ", "", 1) - refnames = keywords["refnames"].strip() - if refnames.startswith("$Format"): - if verbose: - print("keywords are unexpanded, not using") - raise NotThisMethod("unexpanded keywords, not a git-archive tarball") - refs = set([r.strip() for r in refnames.strip("()").split(",")]) - # starting in git-1.8.3, tags are listed as "tag: foo-1.0" instead of - # just "foo-1.0". If we see a "tag: " prefix, prefer those. - TAG = "tag: " - tags = set([r[len(TAG):] for r in refs if r.startswith(TAG)]) - if not tags: - # Either we're using git < 1.8.3, or there really are no tags. We use - # a heuristic: assume all version tags have a digit. The old git %%d - # expansion behaves like git log --decorate=short and strips out the - # refs/heads/ and refs/tags/ prefixes that would let us distinguish - # between branches and tags. By ignoring refnames without digits, we - # filter out many common branch names like "release" and - # "stabilization", as well as "HEAD" and "master". - tags = set([r for r in refs if re.search(r'\d', r)]) - if verbose: - print("discarding '%%s', no digits" %% ",".join(refs - tags)) - if verbose: - print("likely tags: %%s" %% ",".join(sorted(tags))) - for ref in sorted(tags): - # sorting will prefer e.g. "2.0" over "2.0rc1" - if ref.startswith(tag_prefix): - r = ref[len(tag_prefix):] - if verbose: - print("picking %%s" %% r) - return {"version": r, - "full-revisionid": keywords["full"].strip(), - "dirty": False, "error": None, - "date": date} - # no suitable tags, so version is "0+unknown", but full hex is still there - if verbose: - print("no suitable tags, using unknown + full revision id") - return {"version": "0+unknown", - "full-revisionid": keywords["full"].strip(), - "dirty": False, "error": "no suitable tags", "date": None} - - -@register_vcs_handler("git", "pieces_from_vcs") -def git_pieces_from_vcs(tag_prefix, root, verbose, run_command=run_command): - """Get version from 'git describe' in the root of the source tree. - - This only gets called if the git-archive 'subst' keywords were *not* - expanded, and _version.py hasn't already been rewritten with a short - version string, meaning we're inside a checked out source tree. - """ - GITS = ["git"] - if sys.platform == "win32": - GITS = ["git.cmd", "git.exe"] - - out, rc = run_command(GITS, ["rev-parse", "--git-dir"], cwd=root, - hide_stderr=True) - if rc != 0: - if verbose: - print("Directory %%s not under git control" %% root) - raise NotThisMethod("'git rev-parse --git-dir' returned error") - - # if there is a tag matching tag_prefix, this yields TAG-NUM-gHEX[-dirty] - # if there isn't one, this yields HEX[-dirty] (no NUM) - describe_out, rc = run_command(GITS, ["describe", "--tags", "--dirty", - "--always", "--long", - "--match", "%%s*" %% tag_prefix], - cwd=root) - # --long was added in git-1.5.5 - if describe_out is None: - raise NotThisMethod("'git describe' failed") - describe_out = describe_out.strip() - full_out, rc = run_command(GITS, ["rev-parse", "HEAD"], cwd=root) - if full_out is None: - raise NotThisMethod("'git rev-parse' failed") - full_out = full_out.strip() - - pieces = {} - pieces["long"] = full_out - pieces["short"] = full_out[:7] # maybe improved later - pieces["error"] = None - - # parse describe_out. It will be like TAG-NUM-gHEX[-dirty] or HEX[-dirty] - # TAG might have hyphens. - git_describe = describe_out - - # look for -dirty suffix - dirty = git_describe.endswith("-dirty") - pieces["dirty"] = dirty - if dirty: - git_describe = git_describe[:git_describe.rindex("-dirty")] - - # now we have TAG-NUM-gHEX or HEX - - if "-" in git_describe: - # TAG-NUM-gHEX - mo = re.search(r'^(.+)-(\d+)-g([0-9a-f]+)$', git_describe) - if not mo: - # unparseable. Maybe git-describe is misbehaving? - pieces["error"] = ("unable to parse git-describe output: '%%s'" - %% describe_out) - return pieces - - # tag - full_tag = mo.group(1) - if not full_tag.startswith(tag_prefix): - if verbose: - fmt = "tag '%%s' doesn't start with prefix '%%s'" - print(fmt %% (full_tag, tag_prefix)) - pieces["error"] = ("tag '%%s' doesn't start with prefix '%%s'" - %% (full_tag, tag_prefix)) - return pieces - pieces["closest-tag"] = full_tag[len(tag_prefix):] - - # distance: number of commits since tag - pieces["distance"] = int(mo.group(2)) - - # commit: short hex revision ID - pieces["short"] = mo.group(3) - - else: - # HEX: no tags - pieces["closest-tag"] = None - count_out, rc = run_command(GITS, ["rev-list", "HEAD", "--count"], - cwd=root) - pieces["distance"] = int(count_out) # total number of commits - - # commit date: see ISO-8601 comment in git_versions_from_keywords() - date = run_command(GITS, ["show", "-s", "--format=%%ci", "HEAD"], - cwd=root)[0].strip() - # Use only the last line. Previous lines may contain GPG signature - # information. - date = date.splitlines()[-1] - pieces["date"] = date.strip().replace(" ", "T", 1).replace(" ", "", 1) - - return pieces - - -def plus_or_dot(pieces): - """Return a + if we don't already have one, else return a .""" - if "+" in pieces.get("closest-tag", ""): - return "." - return "+" - - -def render_pep440(pieces): - """Build up version string, with post-release "local version identifier". - - Our goal: TAG[+DISTANCE.gHEX[.dirty]] . Note that if you - get a tagged build and then dirty it, you'll get TAG+0.gHEX.dirty - - Exceptions: - 1: no tags. git_describe was just HEX. 0+untagged.DISTANCE.gHEX[.dirty] - """ - if pieces["closest-tag"]: - rendered = pieces["closest-tag"] - if pieces["distance"] or pieces["dirty"]: - rendered += plus_or_dot(pieces) - rendered += "%%d.g%%s" %% (pieces["distance"], pieces["short"]) - if pieces["dirty"]: - rendered += ".dirty" - else: - # exception #1 - rendered = "0+untagged.%%d.g%%s" %% (pieces["distance"], - pieces["short"]) - if pieces["dirty"]: - rendered += ".dirty" - return rendered - - -def render_pep440_pre(pieces): - """TAG[.post0.devDISTANCE] -- No -dirty. - - Exceptions: - 1: no tags. 0.post0.devDISTANCE - """ - if pieces["closest-tag"]: - rendered = pieces["closest-tag"] - if pieces["distance"]: - rendered += ".post0.dev%%d" %% pieces["distance"] - else: - # exception #1 - rendered = "0.post0.dev%%d" %% pieces["distance"] - return rendered - - -def render_pep440_post(pieces): - """TAG[.postDISTANCE[.dev0]+gHEX] . - - The ".dev0" means dirty. Note that .dev0 sorts backwards - (a dirty tree will appear "older" than the corresponding clean one), - but you shouldn't be releasing software with -dirty anyways. - - Exceptions: - 1: no tags. 0.postDISTANCE[.dev0] - """ - if pieces["closest-tag"]: - rendered = pieces["closest-tag"] - if pieces["distance"] or pieces["dirty"]: - rendered += ".post%%d" %% pieces["distance"] - if pieces["dirty"]: - rendered += ".dev0" - rendered += plus_or_dot(pieces) - rendered += "g%%s" %% pieces["short"] - else: - # exception #1 - rendered = "0.post%%d" %% pieces["distance"] - if pieces["dirty"]: - rendered += ".dev0" - rendered += "+g%%s" %% pieces["short"] - return rendered - - -def render_pep440_old(pieces): - """TAG[.postDISTANCE[.dev0]] . - - The ".dev0" means dirty. - - Exceptions: - 1: no tags. 0.postDISTANCE[.dev0] - """ - if pieces["closest-tag"]: - rendered = pieces["closest-tag"] - if pieces["distance"] or pieces["dirty"]: - rendered += ".post%%d" %% pieces["distance"] - if pieces["dirty"]: - rendered += ".dev0" - else: - # exception #1 - rendered = "0.post%%d" %% pieces["distance"] - if pieces["dirty"]: - rendered += ".dev0" - return rendered - - -def render_git_describe(pieces): - """TAG[-DISTANCE-gHEX][-dirty]. - - Like 'git describe --tags --dirty --always'. - - Exceptions: - 1: no tags. HEX[-dirty] (note: no 'g' prefix) - """ - if pieces["closest-tag"]: - rendered = pieces["closest-tag"] - if pieces["distance"]: - rendered += "-%%d-g%%s" %% (pieces["distance"], pieces["short"]) - else: - # exception #1 - rendered = pieces["short"] - if pieces["dirty"]: - rendered += "-dirty" - return rendered - - -def render_git_describe_long(pieces): - """TAG-DISTANCE-gHEX[-dirty]. - - Like 'git describe --tags --dirty --always -long'. - The distance/hash is unconditional. - - Exceptions: - 1: no tags. HEX[-dirty] (note: no 'g' prefix) - """ - if pieces["closest-tag"]: - rendered = pieces["closest-tag"] - rendered += "-%%d-g%%s" %% (pieces["distance"], pieces["short"]) - else: - # exception #1 - rendered = pieces["short"] - if pieces["dirty"]: - rendered += "-dirty" - return rendered - - -def render(pieces, style): - """Render the given version pieces into the requested style.""" - if pieces["error"]: - return {"version": "unknown", - "full-revisionid": pieces.get("long"), - "dirty": None, - "error": pieces["error"], - "date": None} - - if not style or style == "default": - style = "pep440" # the default - - if style == "pep440": - rendered = render_pep440(pieces) - elif style == "pep440-pre": - rendered = render_pep440_pre(pieces) - elif style == "pep440-post": - rendered = render_pep440_post(pieces) - elif style == "pep440-old": - rendered = render_pep440_old(pieces) - elif style == "git-describe": - rendered = render_git_describe(pieces) - elif style == "git-describe-long": - rendered = render_git_describe_long(pieces) - else: - raise ValueError("unknown style '%%s'" %% style) - - return {"version": rendered, "full-revisionid": pieces["long"], - "dirty": pieces["dirty"], "error": None, - "date": pieces.get("date")} - - -def get_versions(): - """Get version information or return default if unable to do so.""" - # I am in _version.py, which lives at ROOT/VERSIONFILE_SOURCE. If we have - # __file__, we can work backwards from there to the root. Some - # py2exe/bbfreeze/non-CPython implementations don't do __file__, in which - # case we can only use expanded keywords. - - cfg = get_config() - verbose = cfg.verbose - - try: - return git_versions_from_keywords(get_keywords(), cfg.tag_prefix, - verbose) - except NotThisMethod: - pass - - try: - root = os.path.realpath(__file__) - # versionfile_source is the relative path from the top of the source - # tree (where the .git directory might live) to this file. Invert - # this to find the root from __file__. - for i in cfg.versionfile_source.split('/'): - root = os.path.dirname(root) - except NameError: - return {"version": "0+unknown", "full-revisionid": None, - "dirty": None, - "error": "unable to find root of source tree", - "date": None} - - try: - pieces = git_pieces_from_vcs(cfg.tag_prefix, root, verbose) - return render(pieces, cfg.style) - except NotThisMethod: - pass - - try: - if cfg.parentdir_prefix: - return versions_from_parentdir(cfg.parentdir_prefix, root, verbose) - except NotThisMethod: - pass - - return {"version": "0+unknown", "full-revisionid": None, - "dirty": None, - "error": "unable to compute version", "date": None} -''' - - -@register_vcs_handler("git", "get_keywords") -def git_get_keywords(versionfile_abs): - """Extract version information from the given file.""" - # the code embedded in _version.py can just fetch the value of these - # keywords. When used from setup.py, we don't want to import _version.py, - # so we do it with a regexp instead. This function is not used from - # _version.py. - keywords = {} - try: - f = open(versionfile_abs, "r") - for line in f.readlines(): - if line.strip().startswith("git_refnames ="): - mo = re.search(r'=\s*"(.*)"', line) - if mo: - keywords["refnames"] = mo.group(1) - if line.strip().startswith("git_full ="): - mo = re.search(r'=\s*"(.*)"', line) - if mo: - keywords["full"] = mo.group(1) - if line.strip().startswith("git_date ="): - mo = re.search(r'=\s*"(.*)"', line) - if mo: - keywords["date"] = mo.group(1) - f.close() - except EnvironmentError: - pass - return keywords - - -@register_vcs_handler("git", "keywords") -def git_versions_from_keywords(keywords, tag_prefix, verbose): - """Get version information from git keywords.""" - if not keywords: - raise NotThisMethod("no keywords at all, weird") - date = keywords.get("date") - if date is not None: - # Use only the last line. Previous lines may contain GPG signature - # information. - date = date.splitlines()[-1] - - # git-2.2.0 added "%cI", which expands to an ISO-8601 -compliant - # datestamp. However we prefer "%ci" (which expands to an "ISO-8601 - # -like" string, which we must then edit to make compliant), because - # it's been around since git-1.5.3, and it's too difficult to - # discover which version we're using, or to work around using an - # older one. - date = date.strip().replace(" ", "T", 1).replace(" ", "", 1) - refnames = keywords["refnames"].strip() - if refnames.startswith("$Format"): - if verbose: - print("keywords are unexpanded, not using") - raise NotThisMethod("unexpanded keywords, not a git-archive tarball") - refs = set([r.strip() for r in refnames.strip("()").split(",")]) - # starting in git-1.8.3, tags are listed as "tag: foo-1.0" instead of - # just "foo-1.0". If we see a "tag: " prefix, prefer those. - TAG = "tag: " - tags = set([r[len(TAG) :] for r in refs if r.startswith(TAG)]) - if not tags: - # Either we're using git < 1.8.3, or there really are no tags. We use - # a heuristic: assume all version tags have a digit. The old git %d - # expansion behaves like git log --decorate=short and strips out the - # refs/heads/ and refs/tags/ prefixes that would let us distinguish - # between branches and tags. By ignoring refnames without digits, we - # filter out many common branch names like "release" and - # "stabilization", as well as "HEAD" and "master". - tags = set([r for r in refs if re.search(r"\d", r)]) - if verbose: - print("discarding '%s', no digits" % ",".join(refs - tags)) - if verbose: - print("likely tags: %s" % ",".join(sorted(tags))) - for ref in sorted(tags): - # sorting will prefer e.g. "2.0" over "2.0rc1" - if ref.startswith(tag_prefix): - r = ref[len(tag_prefix) :] - if verbose: - print("picking %s" % r) - return { - "version": r, - "full-revisionid": keywords["full"].strip(), - "dirty": False, - "error": None, - "date": date, - } - # no suitable tags, so version is "0+unknown", but full hex is still there - if verbose: - print("no suitable tags, using unknown + full revision id") - return { - "version": "0+unknown", - "full-revisionid": keywords["full"].strip(), - "dirty": False, - "error": "no suitable tags", - "date": None, - } - - -@register_vcs_handler("git", "pieces_from_vcs") -def git_pieces_from_vcs(tag_prefix, root, verbose, run_command=run_command): - """Get version from 'git describe' in the root of the source tree. - - This only gets called if the git-archive 'subst' keywords were *not* - expanded, and _version.py hasn't already been rewritten with a short - version string, meaning we're inside a checked out source tree. - """ - GITS = ["git"] - if sys.platform == "win32": - GITS = ["git.cmd", "git.exe"] - - out, rc = run_command(GITS, ["rev-parse", "--git-dir"], cwd=root, hide_stderr=True) - if rc != 0: - if verbose: - print("Directory %s not under git control" % root) - raise NotThisMethod("'git rev-parse --git-dir' returned error") - - # if there is a tag matching tag_prefix, this yields TAG-NUM-gHEX[-dirty] - # if there isn't one, this yields HEX[-dirty] (no NUM) - describe_out, rc = run_command( - GITS, - [ - "describe", - "--tags", - "--dirty", - "--always", - "--long", - "--match", - "%s*" % tag_prefix, - ], - cwd=root, - ) - # --long was added in git-1.5.5 - if describe_out is None: - raise NotThisMethod("'git describe' failed") - describe_out = describe_out.strip() - full_out, rc = run_command(GITS, ["rev-parse", "HEAD"], cwd=root) - if full_out is None: - raise NotThisMethod("'git rev-parse' failed") - full_out = full_out.strip() - - pieces = {} - pieces["long"] = full_out - pieces["short"] = full_out[:7] # maybe improved later - pieces["error"] = None - - # parse describe_out. It will be like TAG-NUM-gHEX[-dirty] or HEX[-dirty] - # TAG might have hyphens. - git_describe = describe_out - - # look for -dirty suffix - dirty = git_describe.endswith("-dirty") - pieces["dirty"] = dirty - if dirty: - git_describe = git_describe[: git_describe.rindex("-dirty")] - - # now we have TAG-NUM-gHEX or HEX - - if "-" in git_describe: - # TAG-NUM-gHEX - mo = re.search(r"^(.+)-(\d+)-g([0-9a-f]+)$", git_describe) - if not mo: - # unparseable. Maybe git-describe is misbehaving? - pieces["error"] = "unable to parse git-describe output: '%s'" % describe_out - return pieces - - # tag - full_tag = mo.group(1) - if not full_tag.startswith(tag_prefix): - if verbose: - fmt = "tag '%s' doesn't start with prefix '%s'" - print(fmt % (full_tag, tag_prefix)) - pieces["error"] = "tag '%s' doesn't start with prefix '%s'" % ( - full_tag, - tag_prefix, - ) - return pieces - pieces["closest-tag"] = full_tag[len(tag_prefix) :] - - # distance: number of commits since tag - pieces["distance"] = int(mo.group(2)) - - # commit: short hex revision ID - pieces["short"] = mo.group(3) - - else: - # HEX: no tags - pieces["closest-tag"] = None - count_out, rc = run_command(GITS, ["rev-list", "HEAD", "--count"], cwd=root) - pieces["distance"] = int(count_out) # total number of commits - - # commit date: see ISO-8601 comment in git_versions_from_keywords() - date = run_command(GITS, ["show", "-s", "--format=%ci", "HEAD"], cwd=root)[ - 0 - ].strip() - # Use only the last line. Previous lines may contain GPG signature - # information. - date = date.splitlines()[-1] - pieces["date"] = date.strip().replace(" ", "T", 1).replace(" ", "", 1) - - return pieces - - -def do_vcs_install(manifest_in, versionfile_source, ipy): - """Git-specific installation logic for Versioneer. - - For Git, this means creating/changing .gitattributes to mark _version.py - for export-subst keyword substitution. - """ - GITS = ["git"] - if sys.platform == "win32": - GITS = ["git.cmd", "git.exe"] - files = [manifest_in, versionfile_source] - if ipy: - files.append(ipy) - try: - me = __file__ - if me.endswith(".pyc") or me.endswith(".pyo"): - me = os.path.splitext(me)[0] + ".py" - versioneer_file = os.path.relpath(me) - except NameError: - versioneer_file = "versioneer.py" - files.append(versioneer_file) - present = False - try: - f = open(".gitattributes", "r") - for line in f.readlines(): - if line.strip().startswith(versionfile_source): - if "export-subst" in line.strip().split()[1:]: - present = True - f.close() - except EnvironmentError: - pass - if not present: - f = open(".gitattributes", "a+") - f.write("%s export-subst\n" % versionfile_source) - f.close() - files.append(".gitattributes") - run_command(GITS, ["add", "--"] + files) - - -def versions_from_parentdir(parentdir_prefix, root, verbose): - """Try to determine the version from the parent directory name. - - Source tarballs conventionally unpack into a directory that includes both - the project name and a version string. We will also support searching up - two directory levels for an appropriately named parent directory - """ - rootdirs = [] - - for i in range(3): - dirname = os.path.basename(root) - if dirname.startswith(parentdir_prefix): - return { - "version": dirname[len(parentdir_prefix) :], - "full-revisionid": None, - "dirty": False, - "error": None, - "date": None, - } - else: - rootdirs.append(root) - root = os.path.dirname(root) # up a level - - if verbose: - print( - "Tried directories %s but none started with prefix %s" - % (str(rootdirs), parentdir_prefix) - ) - raise NotThisMethod("rootdir doesn't start with parentdir_prefix") - - -SHORT_VERSION_PY = """ -# This file was generated by 'versioneer.py' (0.19) from -# revision-control system data, or from the parent directory name of an -# unpacked source archive. Distribution tarballs contain a pre-generated copy -# of this file. - -import json - -version_json = ''' -%s -''' # END VERSION_JSON - - -def get_versions(): - return json.loads(version_json) -""" - - -def versions_from_file(filename): - """Try to determine the version from _version.py if present.""" - try: - with open(filename) as f: - contents = f.read() - except EnvironmentError: - raise NotThisMethod("unable to read _version.py") - mo = re.search( - r"version_json = '''\n(.*)''' # END VERSION_JSON", contents, re.M | re.S - ) - if not mo: - mo = re.search( - r"version_json = '''\r\n(.*)''' # END VERSION_JSON", contents, re.M | re.S - ) - if not mo: - raise NotThisMethod("no version_json in _version.py") - return json.loads(mo.group(1)) - - -def write_to_version_file(filename, versions): - """Write the given version number to the given _version.py file.""" - os.unlink(filename) - contents = json.dumps(versions, sort_keys=True, indent=1, separators=(",", ": ")) - with open(filename, "w") as f: - f.write(SHORT_VERSION_PY % contents) - - print("set %s to '%s'" % (filename, versions["version"])) - - -def plus_or_dot(pieces): - """Return a + if we don't already have one, else return a .""" - if "+" in pieces.get("closest-tag", ""): - return "." - return "+" - - -def render_pep440(pieces): - """Build up version string, with post-release "local version identifier". - - Our goal: TAG[+DISTANCE.gHEX[.dirty]] . Note that if you - get a tagged build and then dirty it, you'll get TAG+0.gHEX.dirty - - Exceptions: - 1: no tags. git_describe was just HEX. 0+untagged.DISTANCE.gHEX[.dirty] - """ - if pieces["closest-tag"]: - rendered = pieces["closest-tag"] - if pieces["distance"] or pieces["dirty"]: - rendered += plus_or_dot(pieces) - rendered += "%d.g%s" % (pieces["distance"], pieces["short"]) - if pieces["dirty"]: - rendered += ".dirty" - else: - # exception #1 - rendered = "0+untagged.%d.g%s" % (pieces["distance"], pieces["short"]) - if pieces["dirty"]: - rendered += ".dirty" - return rendered - - -def render_pep440_pre(pieces): - """TAG[.post0.devDISTANCE] -- No -dirty. - - Exceptions: - 1: no tags. 0.post0.devDISTANCE - """ - if pieces["closest-tag"]: - rendered = pieces["closest-tag"] - if pieces["distance"]: - rendered += ".post0.dev%d" % pieces["distance"] - else: - # exception #1 - rendered = "0.post0.dev%d" % pieces["distance"] - return rendered - - -def render_pep440_post(pieces): - """TAG[.postDISTANCE[.dev0]+gHEX] . - - The ".dev0" means dirty. Note that .dev0 sorts backwards - (a dirty tree will appear "older" than the corresponding clean one), - but you shouldn't be releasing software with -dirty anyways. - - Exceptions: - 1: no tags. 0.postDISTANCE[.dev0] - """ - if pieces["closest-tag"]: - rendered = pieces["closest-tag"] - if pieces["distance"] or pieces["dirty"]: - rendered += ".post%d" % pieces["distance"] - if pieces["dirty"]: - rendered += ".dev0" - rendered += plus_or_dot(pieces) - rendered += "g%s" % pieces["short"] - else: - # exception #1 - rendered = "0.post%d" % pieces["distance"] - if pieces["dirty"]: - rendered += ".dev0" - rendered += "+g%s" % pieces["short"] - return rendered - - -def render_pep440_old(pieces): - """TAG[.postDISTANCE[.dev0]] . - - The ".dev0" means dirty. - - Exceptions: - 1: no tags. 0.postDISTANCE[.dev0] - """ - if pieces["closest-tag"]: - rendered = pieces["closest-tag"] - if pieces["distance"] or pieces["dirty"]: - rendered += ".post%d" % pieces["distance"] - if pieces["dirty"]: - rendered += ".dev0" - else: - # exception #1 - rendered = "0.post%d" % pieces["distance"] - if pieces["dirty"]: - rendered += ".dev0" - return rendered - - -def render_git_describe(pieces): - """TAG[-DISTANCE-gHEX][-dirty]. - - Like 'git describe --tags --dirty --always'. - - Exceptions: - 1: no tags. HEX[-dirty] (note: no 'g' prefix) - """ - if pieces["closest-tag"]: - rendered = pieces["closest-tag"] - if pieces["distance"]: - rendered += "-%d-g%s" % (pieces["distance"], pieces["short"]) - else: - # exception #1 - rendered = pieces["short"] - if pieces["dirty"]: - rendered += "-dirty" - return rendered - - -def render_git_describe_long(pieces): - """TAG-DISTANCE-gHEX[-dirty]. - - Like 'git describe --tags --dirty --always -long'. - The distance/hash is unconditional. - - Exceptions: - 1: no tags. HEX[-dirty] (note: no 'g' prefix) - """ - if pieces["closest-tag"]: - rendered = pieces["closest-tag"] - rendered += "-%d-g%s" % (pieces["distance"], pieces["short"]) - else: - # exception #1 - rendered = pieces["short"] - if pieces["dirty"]: - rendered += "-dirty" - return rendered - - -def render(pieces, style): - """Render the given version pieces into the requested style.""" - if pieces["error"]: - return { - "version": "unknown", - "full-revisionid": pieces.get("long"), - "dirty": None, - "error": pieces["error"], - "date": None, - } - - if not style or style == "default": - style = "pep440" # the default - - if style == "pep440": - rendered = render_pep440(pieces) - elif style == "pep440-pre": - rendered = render_pep440_pre(pieces) - elif style == "pep440-post": - rendered = render_pep440_post(pieces) - elif style == "pep440-old": - rendered = render_pep440_old(pieces) - elif style == "git-describe": - rendered = render_git_describe(pieces) - elif style == "git-describe-long": - rendered = render_git_describe_long(pieces) - else: - raise ValueError("unknown style '%s'" % style) - - return { - "version": rendered, - "full-revisionid": pieces["long"], - "dirty": pieces["dirty"], - "error": None, - "date": pieces.get("date"), - } - - -class VersioneerBadRootError(Exception): - """The project root directory is unknown or missing key files.""" - - -def get_versions(verbose=False): - """Get the project version from whatever source is available. - - Returns dict with two keys: 'version' and 'full'. - """ - if "versioneer" in sys.modules: - # see the discussion in cmdclass.py:get_cmdclass() - del sys.modules["versioneer"] - - root = get_root() - cfg = get_config_from_root(root) - - assert cfg.VCS is not None, "please set [versioneer]VCS= in setup.cfg" - handlers = HANDLERS.get(cfg.VCS) - assert handlers, "unrecognized VCS '%s'" % cfg.VCS - verbose = verbose or cfg.verbose - assert ( - cfg.versionfile_source is not None - ), "please set versioneer.versionfile_source" - assert cfg.tag_prefix is not None, "please set versioneer.tag_prefix" - - versionfile_abs = os.path.join(root, cfg.versionfile_source) - - # extract version from first of: _version.py, VCS command (e.g. 'git - # describe'), parentdir. This is meant to work for developers using a - # source checkout, for users of a tarball created by 'setup.py sdist', - # and for users of a tarball/zipball created by 'git archive' or github's - # download-from-tag feature or the equivalent in other VCSes. - - get_keywords_f = handlers.get("get_keywords") - from_keywords_f = handlers.get("keywords") - if get_keywords_f and from_keywords_f: - try: - keywords = get_keywords_f(versionfile_abs) - ver = from_keywords_f(keywords, cfg.tag_prefix, verbose) - if verbose: - print("got version from expanded keyword %s" % ver) - return ver - except NotThisMethod: - pass - - try: - ver = versions_from_file(versionfile_abs) - if verbose: - print("got version from file %s %s" % (versionfile_abs, ver)) - return ver - except NotThisMethod: - pass - - from_vcs_f = handlers.get("pieces_from_vcs") - if from_vcs_f: - try: - pieces = from_vcs_f(cfg.tag_prefix, root, verbose) - ver = render(pieces, cfg.style) - if verbose: - print("got version from VCS %s" % ver) - return ver - except NotThisMethod: - pass - - try: - if cfg.parentdir_prefix: - ver = versions_from_parentdir(cfg.parentdir_prefix, root, verbose) - if verbose: - print("got version from parentdir %s" % ver) - return ver - except NotThisMethod: - pass - - if verbose: - print("unable to compute version") - - return { - "version": "0+unknown", - "full-revisionid": None, - "dirty": None, - "error": "unable to compute version", - "date": None, - } - - -def get_version(): - """Get the short version string for this project.""" - return get_versions()["version"] - - -def get_cmdclass(cmdclass=None): - """Get the custom setuptools/distutils subclasses used by Versioneer. - - If the package uses a different cmdclass (e.g. one from numpy), it - should be provide as an argument. - """ - if "versioneer" in sys.modules: - del sys.modules["versioneer"] - # this fixes the "python setup.py develop" case (also 'install' and - # 'easy_install .'), in which subdependencies of the main project are - # built (using setup.py bdist_egg) in the same python process. Assume - # a main project A and a dependency B, which use different versions - # of Versioneer. A's setup.py imports A's Versioneer, leaving it in - # sys.modules by the time B's setup.py is executed, causing B to run - # with the wrong versioneer. Setuptools wraps the sub-dep builds in a - # sandbox that restores sys.modules to it's pre-build state, so the - # parent is protected against the child's "import versioneer". By - # removing ourselves from sys.modules here, before the child build - # happens, we protect the child from the parent's versioneer too. - # Also see https://github.com/python-versioneer/python-versioneer/issues/52 - - cmds = {} if cmdclass is None else cmdclass.copy() - - # we add "version" to both distutils and setuptools - from distutils.core import Command - - class cmd_version(Command): - description = "report generated version string" - user_options = [] - boolean_options = [] - - def initialize_options(self): - pass - - def finalize_options(self): - pass - - def run(self): - vers = get_versions(verbose=True) - print("Version: %s" % vers["version"]) - print(" full-revisionid: %s" % vers.get("full-revisionid")) - print(" dirty: %s" % vers.get("dirty")) - print(" date: %s" % vers.get("date")) - if vers["error"]: - print(" error: %s" % vers["error"]) - - cmds["version"] = cmd_version - - # we override "build_py" in both distutils and setuptools - # - # most invocation pathways end up running build_py: - # distutils/build -> build_py - # distutils/install -> distutils/build ->.. - # setuptools/bdist_wheel -> distutils/install ->.. - # setuptools/bdist_egg -> distutils/install_lib -> build_py - # setuptools/install -> bdist_egg ->.. - # setuptools/develop -> ? - # pip install: - # copies source tree to a tempdir before running egg_info/etc - # if .git isn't copied too, 'git describe' will fail - # then does setup.py bdist_wheel, or sometimes setup.py install - # setup.py egg_info -> ? - - # we override different "build_py" commands for both environments - if "build_py" in cmds: - _build_py = cmds["build_py"] - elif "setuptools" in sys.modules: - from setuptools.command.build_py import build_py as _build_py - else: - from distutils.command.build_py import build_py as _build_py - - class cmd_build_py(_build_py): - def run(self): - root = get_root() - cfg = get_config_from_root(root) - versions = get_versions() - _build_py.run(self) - # now locate _version.py in the new build/ directory and replace - # it with an updated value - if cfg.versionfile_build: - target_versionfile = os.path.join(self.build_lib, cfg.versionfile_build) - print("UPDATING %s" % target_versionfile) - write_to_version_file(target_versionfile, versions) - - cmds["build_py"] = cmd_build_py - - if "setuptools" in sys.modules: - from setuptools.command.build_ext import build_ext as _build_ext - else: - from distutils.command.build_ext import build_ext as _build_ext - - class cmd_build_ext(_build_ext): - def run(self): - root = get_root() - cfg = get_config_from_root(root) - versions = get_versions() - _build_ext.run(self) - if self.inplace: - # build_ext --inplace will only build extensions in - # build/lib<..> dir with no _version.py to write to. - # As in place builds will already have a _version.py - # in the module dir, we do not need to write one. - return - # now locate _version.py in the new build/ directory and replace - # it with an updated value - target_versionfile = os.path.join(self.build_lib, cfg.versionfile_source) - print("UPDATING %s" % target_versionfile) - write_to_version_file(target_versionfile, versions) - - cmds["build_ext"] = cmd_build_ext - - if "cx_Freeze" in sys.modules: # cx_freeze enabled? - from cx_Freeze.dist import build_exe as _build_exe - - # nczeczulin reports that py2exe won't like the pep440-style string - # as FILEVERSION, but it can be used for PRODUCTVERSION, e.g. - # setup(console=[{ - # "version": versioneer.get_version().split("+", 1)[0], # FILEVERSION - # "product_version": versioneer.get_version(), - # ... - - class cmd_build_exe(_build_exe): - def run(self): - root = get_root() - cfg = get_config_from_root(root) - versions = get_versions() - target_versionfile = cfg.versionfile_source - print("UPDATING %s" % target_versionfile) - write_to_version_file(target_versionfile, versions) - - _build_exe.run(self) - os.unlink(target_versionfile) - with open(cfg.versionfile_source, "w") as f: - LONG = LONG_VERSION_PY[cfg.VCS] - f.write( - LONG - % { - "DOLLAR": "$", - "STYLE": cfg.style, - "TAG_PREFIX": cfg.tag_prefix, - "PARENTDIR_PREFIX": cfg.parentdir_prefix, - "VERSIONFILE_SOURCE": cfg.versionfile_source, - } - ) - - cmds["build_exe"] = cmd_build_exe - del cmds["build_py"] - - if "py2exe" in sys.modules: # py2exe enabled? - from py2exe.distutils_buildexe import py2exe as _py2exe - - class cmd_py2exe(_py2exe): - def run(self): - root = get_root() - cfg = get_config_from_root(root) - versions = get_versions() - target_versionfile = cfg.versionfile_source - print("UPDATING %s" % target_versionfile) - write_to_version_file(target_versionfile, versions) - - _py2exe.run(self) - os.unlink(target_versionfile) - with open(cfg.versionfile_source, "w") as f: - LONG = LONG_VERSION_PY[cfg.VCS] - f.write( - LONG - % { - "DOLLAR": "$", - "STYLE": cfg.style, - "TAG_PREFIX": cfg.tag_prefix, - "PARENTDIR_PREFIX": cfg.parentdir_prefix, - "VERSIONFILE_SOURCE": cfg.versionfile_source, - } - ) - - cmds["py2exe"] = cmd_py2exe - - # we override different "sdist" commands for both environments - if "sdist" in cmds: - _sdist = cmds["sdist"] - elif "setuptools" in sys.modules: - from setuptools.command.sdist import sdist as _sdist - else: - from distutils.command.sdist import sdist as _sdist - - class cmd_sdist(_sdist): - def run(self): - versions = get_versions() - self._versioneer_generated_versions = versions - # unless we update this, the command will keep using the old - # version - self.distribution.metadata.version = versions["version"] - return _sdist.run(self) - - def make_release_tree(self, base_dir, files): - root = get_root() - cfg = get_config_from_root(root) - _sdist.make_release_tree(self, base_dir, files) - # now locate _version.py in the new base_dir directory - # (remembering that it may be a hardlink) and replace it with an - # updated value - target_versionfile = os.path.join(base_dir, cfg.versionfile_source) - print("UPDATING %s" % target_versionfile) - write_to_version_file( - target_versionfile, self._versioneer_generated_versions - ) - - cmds["sdist"] = cmd_sdist - - return cmds - - -CONFIG_ERROR = """ -setup.cfg is missing the necessary Versioneer configuration. You need -a section like: - - [versioneer] - VCS = git - style = pep440 - versionfile_source = src/myproject/_version.py - versionfile_build = myproject/_version.py - tag_prefix = - parentdir_prefix = myproject- - -You will also need to edit your setup.py to use the results: - - import versioneer - setup(version=versioneer.get_version(), - cmdclass=versioneer.get_cmdclass(), ...) - -Please read the docstring in ./versioneer.py for configuration instructions, -edit setup.cfg, and re-run the installer or 'python versioneer.py setup'. -""" - -SAMPLE_CONFIG = """ -# See the docstring in versioneer.py for instructions. Note that you must -# re-run 'versioneer.py setup' after changing this section, and commit the -# resulting files. - -[versioneer] -#VCS = git -#style = pep440 -#versionfile_source = -#versionfile_build = -#tag_prefix = -#parentdir_prefix = - -""" - -INIT_PY_SNIPPET = """ -from ._version import get_versions -__version__ = get_versions()['version'] -del get_versions -""" - - -def do_setup(): - """Do main VCS-independent setup function for installing Versioneer.""" - root = get_root() - try: - cfg = get_config_from_root(root) - except ( - EnvironmentError, - configparser.NoSectionError, - configparser.NoOptionError, - ) as e: - if isinstance(e, (EnvironmentError, configparser.NoSectionError)): - print("Adding sample versioneer config to setup.cfg", file=sys.stderr) - with open(os.path.join(root, "setup.cfg"), "a") as f: - f.write(SAMPLE_CONFIG) - print(CONFIG_ERROR, file=sys.stderr) - return 1 - - print(" creating %s" % cfg.versionfile_source) - with open(cfg.versionfile_source, "w") as f: - LONG = LONG_VERSION_PY[cfg.VCS] - f.write( - LONG - % { - "DOLLAR": "$", - "STYLE": cfg.style, - "TAG_PREFIX": cfg.tag_prefix, - "PARENTDIR_PREFIX": cfg.parentdir_prefix, - "VERSIONFILE_SOURCE": cfg.versionfile_source, - } - ) - - ipy = os.path.join(os.path.dirname(cfg.versionfile_source), "__init__.py") - if os.path.exists(ipy): - try: - with open(ipy, "r") as f: - old = f.read() - except EnvironmentError: - old = "" - if INIT_PY_SNIPPET not in old: - print(" appending to %s" % ipy) - with open(ipy, "a") as f: - f.write(INIT_PY_SNIPPET) - else: - print(" %s unmodified" % ipy) - else: - print(" %s doesn't exist, ok" % ipy) - ipy = None - - # Make sure both the top-level "versioneer.py" and versionfile_source - # (PKG/_version.py, used by runtime code) are in MANIFEST.in, so - # they'll be copied into source distributions. Pip won't be able to - # install the package without this. - manifest_in = os.path.join(root, "MANIFEST.in") - simple_includes = set() - try: - with open(manifest_in, "r") as f: - for line in f: - if line.startswith("include "): - for include in line.split()[1:]: - simple_includes.add(include) - except EnvironmentError: - pass - # That doesn't cover everything MANIFEST.in can do - # (http://docs.python.org/2/distutils/sourcedist.html#commands), so - # it might give some false negatives. Appending redundant 'include' - # lines is safe, though. - if "versioneer.py" not in simple_includes: - print(" appending 'versioneer.py' to MANIFEST.in") - with open(manifest_in, "a") as f: - f.write("include versioneer.py\n") - else: - print(" 'versioneer.py' already in MANIFEST.in") - if cfg.versionfile_source not in simple_includes: - print( - " appending versionfile_source ('%s') to MANIFEST.in" - % cfg.versionfile_source - ) - with open(manifest_in, "a") as f: - f.write("include %s\n" % cfg.versionfile_source) - else: - print(" versionfile_source already in MANIFEST.in") - - # Make VCS-specific changes. For git, this means creating/changing - # .gitattributes to mark _version.py for export-subst keyword - # substitution. - do_vcs_install(manifest_in, cfg.versionfile_source, ipy) - return 0 - - -def scan_setup_py(): - """Validate the contents of setup.py against Versioneer's expectations.""" - found = set() - setters = False - errors = 0 - with open("setup.py", "r") as f: - for line in f.readlines(): - if "import versioneer" in line: - found.add("import") - if "versioneer.get_cmdclass()" in line: - found.add("cmdclass") - if "versioneer.get_version()" in line: - found.add("get_version") - if "versioneer.VCS" in line: - setters = True - if "versioneer.versionfile_source" in line: - setters = True - if len(found) != 3: - print("") - print("Your setup.py appears to be missing some important items") - print("(but I might be wrong). Please make sure it has something") - print("roughly like the following:") - print("") - print(" import versioneer") - print(" setup( version=versioneer.get_version(),") - print(" cmdclass=versioneer.get_cmdclass(), ...)") - print("") - errors += 1 - if setters: - print("You should remove lines like 'versioneer.VCS = ' and") - print("'versioneer.versionfile_source = ' . This configuration") - print("now lives in setup.cfg, and should be removed from setup.py") - print("") - errors += 1 - return errors - - -if __name__ == "__main__": - cmd = sys.argv[1] - if cmd == "setup": - errors = do_setup() - errors += scan_setup_py() - if errors: - sys.exit(1) From 203c1bf10401ea7e49502c295df101c019b64595 Mon Sep 17 00:00:00 2001 From: Ghislain Vaillant Date: Mon, 28 Nov 2022 23:41:35 +0100 Subject: [PATCH 23/39] CI: Use build frontend in deploy step --- .github/workflows/pythonpackage.yml | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) diff --git a/.github/workflows/pythonpackage.yml b/.github/workflows/pythonpackage.yml index 3302aef..03c522f 100644 --- a/.github/workflows/pythonpackage.yml +++ b/.github/workflows/pythonpackage.yml @@ -91,9 +91,9 @@ jobs: with: python-version: ${{ matrix.python-version }} - name: Install build tools - run: python -m pip install --upgrade pip setuptools wheel twine + run: python -m pip install build twine - name: Build source and wheel distributions - run: python setup.py sdist bdist_wheel + run: python -m build - name: Check distributions run: twine check dist/* - uses: actions/upload-artifact@v2 From 9482e41d81d0bfc7eae279f6e894c1130ac28f4f Mon Sep 17 00:00:00 2001 From: Chris Markiewicz Date: Mon, 28 Nov 2022 22:11:28 -0500 Subject: [PATCH 24/39] CI: Update actions, test on Python 3.10 --- .github/workflows/pythonpackage.yml | 20 ++++++++++---------- 1 file changed, 10 insertions(+), 10 deletions(-) diff --git a/.github/workflows/pythonpackage.yml b/.github/workflows/pythonpackage.yml index 03c522f..13599b8 100644 --- a/.github/workflows/pythonpackage.yml +++ b/.github/workflows/pythonpackage.yml @@ -22,16 +22,16 @@ jobs: runs-on: ubuntu-latest strategy: matrix: - python-version: [3.7, 3.9] # Check oldest and newest versions + python-version: [3.7, '3.10'] # Check oldest and newest versions pip-flags: ['', '--editable'] pydra: - 'pydra' - '--editable git+https://github.com/nipype/pydra.git#egg=pydra' steps: - - uses: actions/checkout@v2 + - uses: actions/checkout@v3 - name: Set up Python ${{ matrix.python-version }} - uses: actions/setup-python@v2 + uses: actions/setup-python@v4 with: python-version: ${{ matrix.python-version }} - name: Install build dependencies @@ -51,12 +51,12 @@ jobs: runs-on: ubuntu-latest strategy: matrix: - python-version: [3.7, 3.8, 3.9] + python-version: [3.7, 3.8, 3.9, '3.10'] steps: - - uses: actions/checkout@v2 + - uses: actions/checkout@v3 - name: Set up Python ${{ matrix.python-version }} - uses: actions/setup-python@v2 + uses: actions/setup-python@v4 with: python-version: ${{ matrix.python-version }} - name: Install build dependencies @@ -71,7 +71,7 @@ jobs: run: | pytest -sv --doctest-modules pydra/tasks/$SUBPACKAGE \ --cov pydra.tasks.$SUBPACKAGE --cov-report xml - - uses: codecov/codecov-action@v1 + - uses: codecov/codecov-action@v3 if: ${{ always() }} @@ -82,12 +82,12 @@ jobs: matrix: python-version: [3.9] steps: - - uses: actions/checkout@v2 + - uses: actions/checkout@v3 with: submodules: recursive fetch-depth: 0 - name: Set up Python ${{ matrix.python-version }} - uses: actions/setup-python@v2 + uses: actions/setup-python@v4 with: python-version: ${{ matrix.python-version }} - name: Install build tools @@ -96,7 +96,7 @@ jobs: run: python -m build - name: Check distributions run: twine check dist/* - - uses: actions/upload-artifact@v2 + - uses: actions/upload-artifact@v3 with: name: distributions path: dist/ From 8791679738570cfffb542b851040baac43a499aa Mon Sep 17 00:00:00 2001 From: Chris Markiewicz Date: Mon, 28 Nov 2022 22:17:27 -0500 Subject: [PATCH 25/39] DOC: Update docs to match flit-scm usage --- README.md | 10 +++++----- 1 file changed, 5 insertions(+), 5 deletions(-) diff --git a/README.md b/README.md index 80d77cf..ae25a36 100644 --- a/README.md +++ b/README.md @@ -24,14 +24,14 @@ All tasks will be inserted into the `pydra.tasks.` namespac # Features of this template -## Versioneer +## Tag-based versioning -The [versioneer](https://github.com/warner/python-versioneer) tool allows for versioning based +The [setuptools_scm](https://github.com/pypa/setuptools_scm) tool allows for versioning based on the most recent git tag. The release process can thus be: ```Shell git tag -a 1.0.0 -python setup.py sdist bdist_wheel +python -m build twine upload dist/* ``` @@ -39,7 +39,7 @@ Note that uploading to PyPI is done via [Continuous integration](#continuous-int a tag is pushed to the repository, so only the first step needs to be donne manually. Note also that we assume tags will be version numbers and not be prefixed with `v` or some other -string. See Versioneer documentation for alternative configurations. +string. See `setuptools_scm` documentation for alternative configurations. ## Namespace packages @@ -92,7 +92,7 @@ task packages. ## For developers Install repo in developer mode from the source directory. It is also useful to -install pre-commit to take care of styling via black: +install pre-commit to take care of styling via [black](https://black.readthedocs.io/): ``` pip install -e .[dev] From edee7da2b9893cfeb78938c6a716d8648b73a9c6 Mon Sep 17 00:00:00 2001 From: Chris Markiewicz Date: Mon, 28 Nov 2022 22:30:31 -0500 Subject: [PATCH 26/39] CI: Drop set-output, upgrade gh-action-pypi-publish to 1.5.1 --- .github/workflows/pythonpackage.yml | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) diff --git a/.github/workflows/pythonpackage.yml b/.github/workflows/pythonpackage.yml index 13599b8..bf2d864 100644 --- a/.github/workflows/pythonpackage.yml +++ b/.github/workflows/pythonpackage.yml @@ -109,10 +109,10 @@ jobs: if: github.event_name == 'push' && startsWith(github.ref, 'refs/tags') env: PYPI_API_TOKEN: "${{ secrets.PYPI_API_TOKEN }}" - run: if [ -n "$PYPI_API_TOKEN" ]; then echo ::set-output name=DEPLOY::true; fi + run: if [ -n "$PYPI_API_TOKEN" ]; then echo "DEPLOY=true" >> $GITHUB_OUTPUT; fi - name: Upload to PyPI if: steps.deployable.outputs.DEPLOY - uses: pypa/gh-action-pypi-publish@27b31702a0e7fc50959f5ad993c78deac1bdfc29 # v1.4.2 + uses: pypa/gh-action-pypi-publish@37f50c210e3d2f9450da2cd423303d6a14a6e29f # v1.5.1 with: user: __token__ password: ${{ secrets.PYPI_API_TOKEN }} From f68569a578d93f83d9117efb646a634714d50f5a Mon Sep 17 00:00:00 2001 From: "pre-commit-ci[bot]" <66853113+pre-commit-ci[bot]@users.noreply.github.com> Date: Mon, 12 Dec 2022 17:26:25 +0000 Subject: [PATCH 27/39] [pre-commit.ci] pre-commit autoupdate MIME-Version: 1.0 Content-Type: text/plain; charset=UTF-8 Content-Transfer-Encoding: 8bit updates: - [github.com/psf/black: 22.10.0 → 22.12.0](https://github.com/psf/black/compare/22.10.0...22.12.0) --- .pre-commit-config.yaml | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/.pre-commit-config.yaml b/.pre-commit-config.yaml index e9251bb..6cc0006 100644 --- a/.pre-commit-config.yaml +++ b/.pre-commit-config.yaml @@ -9,6 +9,6 @@ repos: - id: check-yaml - id: check-added-large-files - repo: https://github.com/psf/black - rev: 22.10.0 + rev: 22.12.0 hooks: - id: black From ac1d8ce4f1e3603fdac5dc0225f0df2f503fe70f Mon Sep 17 00:00:00 2001 From: Tom Close Date: Thu, 13 Jul 2023 16:07:09 +1000 Subject: [PATCH 28/39] renamed TODO placeholder to CHANGEME and changed build system to hatch --- .github/workflows/pythonpackage.yml | 2 +- README.md | 4 +-- pyproject.toml | 40 +++++++++++++++++++---------- 3 files changed, 29 insertions(+), 17 deletions(-) diff --git a/.github/workflows/pythonpackage.yml b/.github/workflows/pythonpackage.yml index bf2d864..a35dc3e 100644 --- a/.github/workflows/pythonpackage.yml +++ b/.github/workflows/pythonpackage.yml @@ -8,7 +8,7 @@ name: Python package # Set once env: - SUBPACKAGE: TODO + SUBPACKAGE: CHANGEME on: push: diff --git a/README.md b/README.md index ae25a36..ead25b1 100644 --- a/README.md +++ b/README.md @@ -8,9 +8,9 @@ All tasks will be inserted into the `pydra.tasks.` namespac 1. Click on new repo. 1. Select this template from the repository template drop down list. 1. Give your repo a name. -1. Once the repo is created and cloned, search for TODO (`grep -rn TODO . `) and +1. Once the repo is created and cloned, search for CHANGEME (`grep -rn CHANGEME . `) and replace with appropriate name. -1. One of the folders is called TODO. This should also be renamed to your package +1. One of the folders is called CHANGEME. This should also be renamed to your package name. 1. Add tasks to the `pydra/tasks/` folder. 1. An example subpackage is found in `pydra/tasks//utils`. diff --git a/pyproject.toml b/pyproject.toml index 2d1b65f..7a7329d 100644 --- a/pyproject.toml +++ b/pyproject.toml @@ -1,13 +1,13 @@ [build-system] -requires = ["flit_scm"] -build-backend = "flit_scm:buildapi" +requires = ["hatchling", "hatch-vcs"] +build-backend = "hatchling.build" [project] -name = "pydra-tasks-TODO" -description = "Description for pydra-tasks-TODO" +name = "pydra-tasks-CHANGEME" +description = "Pydra tasks package for CHANGEME" readme = "README.md" -requires-python = ">=3.7" -dependencies = ["pydra >=0.20"] +requires-python = ">=3.8" +dependencies = ["pydra >=0.22"] license = {file = "LICENSE"} authors = [{name = "Nipype developers", email = "neuroimaging@python.org"}] maintainers = [{name = "Nipype developers", email = "neuroimaging@python.org"}] @@ -46,16 +46,28 @@ test = [ "codecov", ] -[tool.flit.module] -name = "pydra.tasks.TODO" +[tool.hatch.version] +source = "vcs" -[tool.flit.sdist] -exclude = [".gitignore"] +[tool.hatch.build.hooks.vcs] +version-file = "pydra/tasks/CHANGEME/_version.py" -[tool.setuptools_scm] -write_to = "pydra/tasks/TODO/_version.py" +[tool.hatch.build.targets.wheel] +packages = ["pydra"] +include-only = ["pydra/tasks/CHANGEME"] [tool.black] -line-length = 99 -target-version = ["py37"] +target-version = ["py38"] exclude = "_version.py" + +[tool.codespell] +ignore-words = ".codespell-ignorewords" + +[tool.flake8] +doctests = true +per-file-ignores = [ + "__init__.py:F401" +] +max-line-length = 88 +select = "C,E,F,W,B,B950" +extend-ignore = ['E203', 'E501', 'E129', 'W503'] From 7770832b0ed3854371585ed07e3d35ba6777d1fd Mon Sep 17 00:00:00 2001 From: Tom Close Date: Thu, 13 Jul 2023 16:07:37 +1000 Subject: [PATCH 29/39] added docs directory --- docs/Makefile | 20 ++++++++++++++++++++ docs/conf.py | 51 ++++++++++++++++++++++++++++++++++++++++++++++++++ docs/index.rst | 15 +++++++++++++++ docs/make.bat | 35 ++++++++++++++++++++++++++++++++++ 4 files changed, 121 insertions(+) create mode 100644 docs/Makefile create mode 100644 docs/conf.py create mode 100644 docs/index.rst create mode 100644 docs/make.bat diff --git a/docs/Makefile b/docs/Makefile new file mode 100644 index 0000000..d4bb2cb --- /dev/null +++ b/docs/Makefile @@ -0,0 +1,20 @@ +# Minimal makefile for Sphinx documentation +# + +# You can set these variables from the command line, and also +# from the environment for the first two. +SPHINXOPTS ?= +SPHINXBUILD ?= sphinx-build +SOURCEDIR = . +BUILDDIR = _build + +# Put it first so that "make" without argument is like "make help". +help: + @$(SPHINXBUILD) -M help "$(SOURCEDIR)" "$(BUILDDIR)" $(SPHINXOPTS) $(O) + +.PHONY: help Makefile + +# Catch-all target: route all unknown targets to Sphinx using the new +# "make mode" option. $(O) is meant as a shortcut for $(SPHINXOPTS). +%: Makefile + @$(SPHINXBUILD) -M $@ "$(SOURCEDIR)" "$(BUILDDIR)" $(SPHINXOPTS) $(O) diff --git a/docs/conf.py b/docs/conf.py new file mode 100644 index 0000000..c8338f4 --- /dev/null +++ b/docs/conf.py @@ -0,0 +1,51 @@ +# Configuration file for the Sphinx documentation builder. +# +# This file only contains a selection of the most common options. For a full +# list see the documentation: +# https://www.sphinx-doc.org/en/master/usage/configuration.html + +# -- Path setup -------------------------------------------------------------- + +# If extensions (or modules to document with autodoc) are in another directory, +# add these directories to sys.path here. If the directory is relative to the +# documentation root, use os.path.abspath to make it absolute, like shown here. +# +# import os +# import sys +# sys.path.insert(0, os.path.abspath('.')) + + +# -- Project information ----------------------------------------------------- + +project = "pydra-CHANGEME" +copyright = "2020, Xihe Xie" +author = "Xihe Xie" + + +# -- General configuration --------------------------------------------------- + +# Add any Sphinx extension module names here, as strings. They can be +# extensions coming with Sphinx (named 'sphinx.ext.*') or your custom +# ones. +extensions = [] + +# Add any paths that contain templates here, relative to this directory. +templates_path = ["_templates"] + +# List of patterns, relative to source directory, that match files and +# directories to ignore when looking for source files. +# This pattern also affects html_static_path and html_extra_path. +exclude_patterns = ["_build", "Thumbs.db", ".DS_Store"] + + +# -- Options for HTML output ------------------------------------------------- + +# The theme to use for HTML and HTML Help pages. See the documentation for +# a list of builtin themes. +# +html_theme = "alabaster" + +# Add any paths that contain custom static files (such as style sheets) here, +# relative to this directory. They are copied after the builtin static files, +# so a file named "default.css" will overwrite the builtin "default.css". +html_static_path = ["_static"] diff --git a/docs/index.rst b/docs/index.rst new file mode 100644 index 0000000..f9bdc2e --- /dev/null +++ b/docs/index.rst @@ -0,0 +1,15 @@ +Welcome to pydra-CHANGEME's documentation! +========================================= + +.. toctree:: + :maxdepth: 2 + :caption: Contents: + + + +Indices and tables +================== + +* :ref:`genindex` +* :ref:`modindex` +* :ref:`search` diff --git a/docs/make.bat b/docs/make.bat new file mode 100644 index 0000000..2119f51 --- /dev/null +++ b/docs/make.bat @@ -0,0 +1,35 @@ +@ECHO OFF + +pushd %~dp0 + +REM Command file for Sphinx documentation + +if "%SPHINXBUILD%" == "" ( + set SPHINXBUILD=sphinx-build +) +set SOURCEDIR=. +set BUILDDIR=_build + +if "%1" == "" goto help + +%SPHINXBUILD% >NUL 2>NUL +if errorlevel 9009 ( + echo. + echo.The 'sphinx-build' command was not found. Make sure you have Sphinx + echo.installed, then set the SPHINXBUILD environment variable to point + echo.to the full path of the 'sphinx-build' executable. Alternatively you + echo.may add the Sphinx directory to PATH. + echo. + echo.If you don't have Sphinx installed, grab it from + echo.http://sphinx-doc.org/ + exit /b 1 +) + +%SPHINXBUILD% -M %1 %SOURCEDIR% %BUILDDIR% %SPHINXOPTS% %O% +goto end + +:help +%SPHINXBUILD% -M help %SOURCEDIR% %BUILDDIR% %SPHINXOPTS% %O% + +:end +popd From a5003a27886cd723aec261aa4e0e20f776ab8ec8 Mon Sep 17 00:00:00 2001 From: Tom Close Date: Thu, 13 Jul 2023 16:07:51 +1000 Subject: [PATCH 30/39] deleted utils subpackage --- pydra/tasks/{TODO => CHANGEME}/__init__.py | 2 +- pydra/tasks/TODO/utils/__init__.py | 6 ------ 2 files changed, 1 insertion(+), 7 deletions(-) rename pydra/tasks/{TODO => CHANGEME}/__init__.py (86%) delete mode 100644 pydra/tasks/TODO/utils/__init__.py diff --git a/pydra/tasks/TODO/__init__.py b/pydra/tasks/CHANGEME/__init__.py similarity index 86% rename from pydra/tasks/TODO/__init__.py rename to pydra/tasks/CHANGEME/__init__.py index 5b9e250..2c241a0 100644 --- a/pydra/tasks/TODO/__init__.py +++ b/pydra/tasks/CHANGEME/__init__.py @@ -3,7 +3,7 @@ imported. >>> import pydra.engine ->>> import pydra.tasks.TODO +>>> import pydra.tasks.CHANGEME """ try: from ._version import __version__ diff --git a/pydra/tasks/TODO/utils/__init__.py b/pydra/tasks/TODO/utils/__init__.py deleted file mode 100644 index 562c98f..0000000 --- a/pydra/tasks/TODO/utils/__init__.py +++ /dev/null @@ -1,6 +0,0 @@ -""" -This is a basic doctest demonstrating that subpackags can also be -imported. - ->>> import pydra.tasks.TODO.utils -""" From 7f8ef499ad5768290c635f04da4672308fa87330 Mon Sep 17 00:00:00 2001 From: Tom Close Date: Thu, 27 Jul 2023 15:31:58 +1000 Subject: [PATCH 31/39] added .vscode and .DS_store to gitignore --- .gitignore | 6 ++++++ 1 file changed, 6 insertions(+) diff --git a/.gitignore b/.gitignore index 846dc44..ca32838 100644 --- a/.gitignore +++ b/.gitignore @@ -130,3 +130,9 @@ dmypy.json # Pycharm .idea + +# VS Code +.vscode + +# Mac garbarge +.DS_store \ No newline at end of file From 2cf8953504a90605693b125b777f1f7445c554b1 Mon Sep 17 00:00:00 2001 From: Tom Close Date: Fri, 28 Jul 2023 13:40:07 +1000 Subject: [PATCH 32/39] updated tasks template to include v1 and latest sub-packages --- .gitignore | 2 +- README.md | 11 ++++++++--- pydra/tasks/CHANGEME/latest.py | 1 + pydra/tasks/CHANGEME/v1/__init__.py | 0 pyproject.toml | 2 +- 5 files changed, 11 insertions(+), 5 deletions(-) create mode 100644 pydra/tasks/CHANGEME/latest.py create mode 100644 pydra/tasks/CHANGEME/v1/__init__.py diff --git a/.gitignore b/.gitignore index ca32838..9609ab4 100644 --- a/.gitignore +++ b/.gitignore @@ -135,4 +135,4 @@ dmypy.json .vscode # Mac garbarge -.DS_store \ No newline at end of file +.DS_store diff --git a/README.md b/README.md index ead25b1..2dac28f 100644 --- a/README.md +++ b/README.md @@ -12,9 +12,14 @@ All tasks will be inserted into the `pydra.tasks.` namespac replace with appropriate name. 1. One of the folders is called CHANGEME. This should also be renamed to your package name. -1. Add tasks to the `pydra/tasks/` folder. -1. An example subpackage is found in `pydra/tasks//utils`. - You may wish to add tools to it or delete it. +1. Under the newly renamed package (i.e. formerly CHANGME) there is a directory named "v1", + `pydra/tasks//v1`, change this to valid Python package name starting with + 'v' to indicate the version of the tool the Pydra interfaces will be designed for, + e.g. FSL v6.0.2 could be `pydra/tasks/fsl/v6` or `pydra/tasks/fsl/v6_0` depending on + how stable the CLI of the tool is between minor versions. +1. Edit `pydra/tasks//latest`, change the line `from .v1 import *` to refer + to the `v` module, e.g. `from .v6 import *` +1. Add tasks to the `pydra/tasks//v` folder. 1. You may want to initialize a [Sphinx] docs directory. 1. Review the workflow in `.github/workflows/pythonpackage.yml`. Testing editable installations is probably not useful unless you are reconfiguring namespace packages. diff --git a/pydra/tasks/CHANGEME/latest.py b/pydra/tasks/CHANGEME/latest.py new file mode 100644 index 0000000..e0d08e6 --- /dev/null +++ b/pydra/tasks/CHANGEME/latest.py @@ -0,0 +1 @@ +from .v1 import * # noqa diff --git a/pydra/tasks/CHANGEME/v1/__init__.py b/pydra/tasks/CHANGEME/v1/__init__.py new file mode 100644 index 0000000..e69de29 diff --git a/pyproject.toml b/pyproject.toml index 7a7329d..9ff4476 100644 --- a/pyproject.toml +++ b/pyproject.toml @@ -66,7 +66,7 @@ ignore-words = ".codespell-ignorewords" [tool.flake8] doctests = true per-file-ignores = [ - "__init__.py:F401" + "__init__.py:F401,F403" ] max-line-length = 88 select = "C,E,F,W,B,B950" From 45f53ed31b0fffa85a77290c7ee14c76311b4cb2 Mon Sep 17 00:00:00 2001 From: Tom Close Date: Fri, 28 Jul 2023 13:41:07 +1000 Subject: [PATCH 33/39] added in flake8 ignore --- .flake8 | 17 +++++++++++++++++ 1 file changed, 17 insertions(+) create mode 100644 .flake8 diff --git a/.flake8 b/.flake8 new file mode 100644 index 0000000..aeba0fb --- /dev/null +++ b/.flake8 @@ -0,0 +1,17 @@ + +[flake8] +doctests = True +exclude = + **/__init__.py + *build/ + docs/sphinxext/ + docs/tools/ + docs/conf.py + arcana/_version.py + versioneer.py + docs/source/conf.py +max-line-length = 88 +select = C,E,F,W,B,B950 +extend-ignore = E203,E501,E129,W503 +per-file-ignores = + __init__.py:F401,F403 From e34d31290f6767a80e8742c55fe19dc220b405cb Mon Sep 17 00:00:00 2001 From: Tom Close Date: Fri, 28 Jul 2023 13:41:39 +1000 Subject: [PATCH 34/39] touched up flake8 config --- .flake8 | 2 -- 1 file changed, 2 deletions(-) diff --git a/.flake8 b/.flake8 index aeba0fb..40e811e 100644 --- a/.flake8 +++ b/.flake8 @@ -7,8 +7,6 @@ exclude = docs/sphinxext/ docs/tools/ docs/conf.py - arcana/_version.py - versioneer.py docs/source/conf.py max-line-length = 88 select = C,E,F,W,B,B950 From be19057a6c21cae4025a643516e53aa73b072d7a Mon Sep 17 00:00:00 2001 From: Tom Close Date: Fri, 28 Jul 2023 13:47:12 +1000 Subject: [PATCH 35/39] touched up version referencing --- README.md | 4 ++-- pydra/tasks/CHANGEME/__init__.py | 5 ++++- pydra/tasks/CHANGEME/latest.py | 2 ++ 3 files changed, 8 insertions(+), 3 deletions(-) diff --git a/README.md b/README.md index 2dac28f..60b6a9e 100644 --- a/README.md +++ b/README.md @@ -17,8 +17,8 @@ All tasks will be inserted into the `pydra.tasks.` namespac 'v' to indicate the version of the tool the Pydra interfaces will be designed for, e.g. FSL v6.0.2 could be `pydra/tasks/fsl/v6` or `pydra/tasks/fsl/v6_0` depending on how stable the CLI of the tool is between minor versions. -1. Edit `pydra/tasks//latest`, change the line `from .v1 import *` to refer - to the `v` module, e.g. `from .v6 import *` +1. Edit `pydra/tasks//latest.py` to update references to `v1` to the + tool target version 1. Add tasks to the `pydra/tasks//v` folder. 1. You may want to initialize a [Sphinx] docs directory. 1. Review the workflow in `.github/workflows/pythonpackage.yml`. Testing editable installations diff --git a/pydra/tasks/CHANGEME/__init__.py b/pydra/tasks/CHANGEME/__init__.py index 2c241a0..887f1a7 100644 --- a/pydra/tasks/CHANGEME/__init__.py +++ b/pydra/tasks/CHANGEME/__init__.py @@ -8,4 +8,7 @@ try: from ._version import __version__ except ImportError: - pass + raise RuntimeError( + "Pydra package 'CHANGEME' has not been installed, please use " + "`pip install -e ` to install development version" + ) diff --git a/pydra/tasks/CHANGEME/latest.py b/pydra/tasks/CHANGEME/latest.py index e0d08e6..f41e057 100644 --- a/pydra/tasks/CHANGEME/latest.py +++ b/pydra/tasks/CHANGEME/latest.py @@ -1 +1,3 @@ +PACKAGE_VERSION = "v1" + from .v1 import * # noqa From 2aa18e6404bf6b47ef0eaaf072dd25ff7113ca98 Mon Sep 17 00:00:00 2001 From: Tom Close Date: Tue, 1 Aug 2023 19:58:28 +1000 Subject: [PATCH 36/39] added fileformats deps to pyproject --- .github/workflows/{pythonpackage.yml => pythonpackage.yaml} | 0 README.md | 2 +- pyproject.toml | 6 +++++- 3 files changed, 6 insertions(+), 2 deletions(-) rename .github/workflows/{pythonpackage.yml => pythonpackage.yaml} (100%) diff --git a/.github/workflows/pythonpackage.yml b/.github/workflows/pythonpackage.yaml similarity index 100% rename from .github/workflows/pythonpackage.yml rename to .github/workflows/pythonpackage.yaml diff --git a/README.md b/README.md index 60b6a9e..3166e8a 100644 --- a/README.md +++ b/README.md @@ -12,7 +12,7 @@ All tasks will be inserted into the `pydra.tasks.` namespac replace with appropriate name. 1. One of the folders is called CHANGEME. This should also be renamed to your package name. -1. Under the newly renamed package (i.e. formerly CHANGME) there is a directory named "v1", +1. Under the newly renamed package (i.e. formerly CHANGEME) there is a directory named "v1", `pydra/tasks//v1`, change this to valid Python package name starting with 'v' to indicate the version of the tool the Pydra interfaces will be designed for, e.g. FSL v6.0.2 could be `pydra/tasks/fsl/v6` or `pydra/tasks/fsl/v6_0` depending on diff --git a/pyproject.toml b/pyproject.toml index 9ff4476..546fa67 100644 --- a/pyproject.toml +++ b/pyproject.toml @@ -7,7 +7,11 @@ name = "pydra-tasks-CHANGEME" description = "Pydra tasks package for CHANGEME" readme = "README.md" requires-python = ">=3.8" -dependencies = ["pydra >=0.22"] +dependencies = [ + "pydra >=0.22", + "fileformats >=0.8.3", + "fileformats-datascience >=0.1", + "fileformats-medimage >=0.4.1"] license = {file = "LICENSE"} authors = [{name = "Nipype developers", email = "neuroimaging@python.org"}] maintainers = [{name = "Nipype developers", email = "neuroimaging@python.org"}] From ecb3e80414e0360bf58904e95ac3b46316a1311c Mon Sep 17 00:00:00 2001 From: Tom Close Date: Tue, 1 Aug 2023 21:41:55 +1000 Subject: [PATCH 37/39] added in fileformats-extras deps to test --- pyproject.toml | 2 ++ 1 file changed, 2 insertions(+) diff --git a/pyproject.toml b/pyproject.toml index 546fa67..ad5fdeb 100644 --- a/pyproject.toml +++ b/pyproject.toml @@ -48,6 +48,8 @@ test = [ "pytest-xdist", "pytest-rerunfailures", "codecov", + "fileformats-extras", + "fileformats-medimage-extras", ] [tool.hatch.version] From cebe03dee217e20d417def5e5bff50859fd50794 Mon Sep 17 00:00:00 2001 From: Tom Close Date: Tue, 1 Aug 2023 22:26:38 +1000 Subject: [PATCH 38/39] added fileformats-datascience-extras to tests --- pyproject.toml | 1 + 1 file changed, 1 insertion(+) diff --git a/pyproject.toml b/pyproject.toml index ad5fdeb..31d4625 100644 --- a/pyproject.toml +++ b/pyproject.toml @@ -49,6 +49,7 @@ test = [ "pytest-rerunfailures", "codecov", "fileformats-extras", + "fileformats-datascience-extras", "fileformats-medimage-extras", ] From 843d381b12157b036a79dd423bc5e369dbd1ef15 Mon Sep 17 00:00:00 2001 From: Tom Close Date: Thu, 3 Aug 2023 13:30:53 +1000 Subject: [PATCH 39/39] replaced env var with CHANGEME template in github workflow --- .github/workflows/pythonpackage.yaml | 12 ++++-------- 1 file changed, 4 insertions(+), 8 deletions(-) diff --git a/.github/workflows/pythonpackage.yaml b/.github/workflows/pythonpackage.yaml index a35dc3e..8709e55 100644 --- a/.github/workflows/pythonpackage.yaml +++ b/.github/workflows/pythonpackage.yaml @@ -6,10 +6,6 @@ name: Python package -# Set once -env: - SUBPACKAGE: CHANGEME - on: push: branches: [ main ] @@ -44,7 +40,7 @@ jobs: - name: Install task package run: | pip install ${{ matrix.pip-flags }} ".[dev]" - python -c "import pydra.tasks.$SUBPACKAGE as m; print(f'{m.__name__} {m.__version__} @ {m.__file__}')" + python -c "import pydra.tasks.CHANGEME as m; print(f'{m.__name__} {m.__version__} @ {m.__file__}')" python -c "import pydra as m; print(f'{m.__name__} {m.__version__} @ {m.__file__}')" test: @@ -65,12 +61,12 @@ jobs: - name: Install task package run: | pip install ".[test]" - python -c "import pydra.tasks.$SUBPACKAGE as m; print(f'{m.__name__} {m.__version__} @ {m.__file__}')" + python -c "import pydra.tasks.CHANGEME as m; print(f'{m.__name__} {m.__version__} @ {m.__file__}')" python -c "import pydra as m; print(f'{m.__name__} {m.__version__} @ {m.__file__}')" - name: Test with pytest run: | - pytest -sv --doctest-modules pydra/tasks/$SUBPACKAGE \ - --cov pydra.tasks.$SUBPACKAGE --cov-report xml + pytest -sv --doctest-modules pydra/tasks/CHANGEME \ + --cov pydra.tasks.CHANGEME --cov-report xml - uses: codecov/codecov-action@v3 if: ${{ always() }}