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get protospacers

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nyoungb2 edited this page Nov 5, 2013 · 4 revisions

This is a workflow for getting protospacers from a spacer blast table

See spacer blast if you have not yet performed the spacer BLAST
Your blast table must be in the output format:

CLdb_spacerBlastGetProto.pl < spacer_blast/Uspacers_DRfilt.blastn.txt > spacer_blast/Uspacers_DRfilt_proto.blastn.txt