Update ncbitaxonmin_plus.obo #10
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| name: extract_terms_without_purls_yaml | |
| on: | |
| push: | |
| branches: | |
| - main | |
| jobs: | |
| extract_terms_without_purls: | |
| runs-on: ubuntu-latest | |
| steps: | |
| - name: Checkout repository | |
| uses: actions/checkout@v3 | |
| - name: extract all dpbo terms | |
| run: | | |
| grep -E 'id: DPBO:[0-9]+' dpbo.obo > new_extraction.txt | |
| - name: extract TANs and replace colon | |
| run: | | |
| sed -i 's/id: DPBO:\([0-9]\+\)/DPBO_\1/g' new_extraction.txt | |
| - name: sort files | |
| run: | | |
| sort new_extraction.txt > new_extraction_sorted.txt | |
| sort purls.txt > purls_sorted.txt | |
| - name: get difference in files | |
| run: | | |
| comm -23 new_extraction_sorted.txt purls.txt > missing_purls.txt | |
| - name: remove temporary new file | |
| run: | | |
| rm new_extraction.txt | |
| rm new_extraction_sorted.txt | |
| rm purls_sorted.txt | |
| - name: commit and push | |
| uses: mikeal/publish-to-github-action@master | |
| env: | |
| GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }} | |
| BRANCH_NAME: 'main' |