diff --git a/workflows/raredisease.nf b/workflows/raredisease.nf index 88425b42..10ef83b1 100644 --- a/workflows/raredisease.nf +++ b/workflows/raredisease.nf @@ -191,7 +191,7 @@ workflow RAREDISEASE { ch_genome_fasta = Channel.fromPath(params.fasta).map { it -> [[id:it[0].simpleName], it] }.collect() ch_genome_fai = params.fai ? Channel.fromPath(params.fai).map {it -> [[id:it[0].simpleName], it]}.collect() : Channel.empty() - ch_genome_dict_unprocessed = params.sequence_dictionary ? Channel.fromPath(params.sequence_dictionary).map {it -> [[id:it[0].simpleName], it]}.collect() + ch_genome_dictionary = params.sequence_dictionary ? Channel.fromPath(params.sequence_dictionary).map {it -> [[id:it[0].simpleName], it]}.collect() : Channel.empty() ch_gnomad_af_tab = params.gnomad_af ? Channel.fromPath(params.gnomad_af).map{ it -> [[id:it[0].simpleName], it] }.collect() : Channel.value([[],[]]) @@ -212,7 +212,7 @@ workflow RAREDISEASE { PREPARE_REFERENCES ( ch_genome_fasta, ch_genome_fai, - ch_genome_dict_unprocessed, + ch_genome_dictionary, ch_mt_fasta, ch_gnomad_af_tab, ch_dbsnp,