diff --git a/workflows/raredisease.nf b/workflows/raredisease.nf index 1b079a7f..6c9ba228 100644 --- a/workflows/raredisease.nf +++ b/workflows/raredisease.nf @@ -902,8 +902,8 @@ workflow RAREDISEASE { ) ch_multiqc_files = ch_multiqc_files.mix(FASTQC.out.zip.collect{it[1]}.ifEmpty([])) - ch_multiqc_files = ch_multiqc_files.mix(FASTP.out.json.collect{it[1]}.ifEmpty([]))) - ch_multiqc_files = ch_multiqc_files.mix(NGSBITS_SAMPLEGENDER.out.tsv.collect{it[1]}.ifEmpty([]))) + ch_multiqc_files = ch_multiqc_files.mix(FASTP.out.json.collect{it[1]}.ifEmpty([])) + ch_multiqc_files = ch_multiqc_files.mix(NGSBITS_SAMPLEGENDER.out.tsv.collect{it[1]}.ifEmpty([])) ch_multiqc_files = ch_multiqc_files.mix(QC_BAM.out.multiple_metrics.map{it[1]}.collect().ifEmpty([])) ch_multiqc_files = ch_multiqc_files.mix(QC_BAM.out.hs_metrics.map{it[1]}.collect().ifEmpty([])) ch_multiqc_files = ch_multiqc_files.mix(QC_BAM.out.qualimap_results.map{it[1]}.collect().ifEmpty([]))