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Add option to remove hashes, e.g. ribosomal seqs #127

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olgabot opened this issue Jan 11, 2021 · 2 comments
Open

Add option to remove hashes, e.g. ribosomal seqs #127

olgabot opened this issue Jan 11, 2021 · 2 comments
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enhancement New feature or request

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@olgabot
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olgabot commented Jan 11, 2021

Is your feature request related to a problem? Please describe

For single cell, many genes change due to techncial and not biological reasons, and many of these are ribosomal genes or associated with single cell dissociation

Describe the solution you'd like

Add a fasta of sequences to remove, and/or add the option to provide a precomputed signature of hashes to remove

Describe alternatives you've considered

Additional context

@olgabot olgabot added the enhancement New feature or request label Jan 11, 2021
@olgabot
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olgabot commented Jan 29, 2021

Use https://github.com/luizirber/2021-01-27-olga-remove-protein (in Rust) to remove ribosomal hashes. Super super fast sig loading and hash subtraction

cc @luizirber
@phoenixAja (in case you're interested!)

@phoenixAja
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awesome!

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