From db02da2e31b9eb505c73a8b6677cd7f9d17bb1d8 Mon Sep 17 00:00:00 2001
From: Jover Lee <joverlee521@gmail.com>
Date: Tue, 18 Jun 2024 10:38:58 -0700
Subject: [PATCH] WIP: ingest.yaml add Snakemake report

---
 .github/workflows/ingest.yaml | 4 +++-
 1 file changed, 3 insertions(+), 1 deletion(-)

diff --git a/.github/workflows/ingest.yaml b/.github/workflows/ingest.yaml
index 1a455cf..4fe97f0 100644
--- a/.github/workflows/ingest.yaml
+++ b/.github/workflows/ingest.yaml
@@ -69,7 +69,8 @@ jobs:
           ingest \
             upload_all \
             --configfile build-configs/nextstrain-automation/config.yaml \
-            $CONFIG_OVERRIDES
+            $CONFIG_OVERRIDES;
+        nextstrain build ingest --report report.html
       # Specifying artifact name to differentiate ingest build outputs from
       # the phylogenetic build outputs
       artifact-name: ingest-build-output
@@ -78,3 +79,4 @@ jobs:
         ingest/benchmarks/
         ingest/logs/
         ingest/.snakemake/log/
+        ingest/report.html