diff --git a/ingest/rules/curate.smk b/ingest/rules/curate.smk index f278fec..f5701d0 100644 --- a/ingest/rules/curate.smk +++ b/ingest/rules/curate.smk @@ -90,11 +90,11 @@ rule curate: --default-value {params.authors_default_value} \ | ./vendored/apply-geolocation-rules \ --geolocation-rules {input.all_geolocation_rules} \ - | ./bin/fix-zika-strain-names.py \ + | ./scripts/fix-zika-strain-names.py \ | ./vendored/merge-user-metadata \ --annotations {input.annotations} \ --id-field {params.annotations_id} \ - | ./bin/ndjson-to-tsv-and-fasta \ + | ./scripts/ndjson-to-tsv-and-fasta \ --metadata-columns {params.metadata_columns} \ --metadata {output.metadata} \ --fasta {output.sequences} \ diff --git a/ingest/bin/fasta-to-ndjson b/ingest/scripts/fasta-to-ndjson similarity index 100% rename from ingest/bin/fasta-to-ndjson rename to ingest/scripts/fasta-to-ndjson diff --git a/ingest/bin/fix-zika-strain-names.py b/ingest/scripts/fix-zika-strain-names.py similarity index 100% rename from ingest/bin/fix-zika-strain-names.py rename to ingest/scripts/fix-zika-strain-names.py diff --git a/ingest/bin/ndjson-to-tsv-and-fasta b/ingest/scripts/ndjson-to-tsv-and-fasta similarity index 100% rename from ingest/bin/ndjson-to-tsv-and-fasta rename to ingest/scripts/ndjson-to-tsv-and-fasta