diff --git a/ingest/README.md b/ingest/README.md index 0e8ad81..51c86be 100644 --- a/ingest/README.md +++ b/ingest/README.md @@ -31,7 +31,12 @@ This will produce two files (within the `ingest` directory): Run the complete ingest pipeline and upload results to AWS S3 with ```sh -nextstrain build . --configfiles defaults/config.yaml build-defaults/nextstrain-automation/config.yaml +nextstrain build \ + --env AWS_ACCESS_KEY_ID \ + --env AWS_SECRET_ACCESS_KEY \ + . \ + upload_all \ + --configfile build-configs/nextstrain-automation/config.yaml ``` ### Adding new sequences not from GenBank