diff --git a/ingest/defaults/geolocation-rules.tsv b/ingest/defaults/geolocation-rules.tsv index 8b13789..3dea34e 100644 --- a/ingest/defaults/geolocation-rules.tsv +++ b/ingest/defaults/geolocation-rules.tsv @@ -1 +1 @@ - +North America/Virgin Islands/*/* North America/USVI/*/* \ No newline at end of file diff --git a/phylogenetic/data/metadata_usvi.tsv b/phylogenetic/data/metadata_usvi.tsv index b790dae..849c9e1 100644 --- a/phylogenetic/data/metadata_usvi.tsv +++ b/phylogenetic/data/metadata_usvi.tsv @@ -1,26 +1,26 @@ accession strain date region country division location length authors institution url -VI44 USVI/44/2016 2016-10-17 North America Usvi Saint Thomas Saint Thomas 10807 Black et al fh https://github.com/blab/zika-usvi/ -VI20_12plex USVI/20/2016 2016-10-13 North America Usvi Saint Croix Saint Croix 10792 Black et al fh https://github.com/blab/zika-usvi/ -VI41 USVI/41/2016 2016-11-10 North America Usvi Saint Croix Saint Croix 10807 Black et al fh https://github.com/blab/zika-usvi/ -VI32_12plex USVI/32/2016 2016-08-11 North America Usvi Saint Croix Saint Croix 10792 Black et al fh https://github.com/blab/zika-usvi/ -VI12 USVI/12/2016 2016-11-04 North America Usvi Saint Croix Saint Croix 10636 Black et al fh https://github.com/blab/zika-usvi/ -VI46 USVI/46/2016 2016-07-15 North America Usvi Saint Thomas Saint Thomas 10807 Black et al fh https://github.com/blab/zika-usvi/ -VI23_12plex USVI/23/2016 2016-07-12 North America Usvi Saint Thomas Saint Thomas 10807 Black et al fh https://github.com/blab/zika-usvi/ -VI28_1d USVI/28/2016 2016-11-28 North America Usvi Saint Croix Saint Croix 10807 Black et al fh https://github.com/blab/zika-usvi/ -VI45 USVI/45/2016 2016-08-03 North America Usvi Saint Thomas Saint Thomas 10807 Black et al fh https://github.com/blab/zika-usvi/ -VI37 USVI/37/2016 2016-10-06 North America Usvi Saint Croix Saint Croix 10807 Black et al fh https://github.com/blab/zika-usvi/ -VI39_12plex USVI/39/2016 2016-11-09 North America Usvi Saint Croix Saint Croix 10807 Black et al fh https://github.com/blab/zika-usvi/ -VI36 USVI/36/2016 2016-09-13 North America Usvi Saint Croix Saint Croix 10807 Black et al fh https://github.com/blab/zika-usvi/ -VI34 USVI/34/2016 2016-08-01 North America Usvi Saint Thomas Saint Thomas 10792 Black et al fh https://github.com/blab/zika-usvi/ -VI11 USVI/11/2016 2016-03-22 North America Usvi Saint Thomas Saint Thomas 10636 Black et al fh https://github.com/blab/zika-usvi/ -VI6 USVI/6/2016 2016-10-19 North America Usvi Saint John Saint John 10636 Black et al fh https://github.com/blab/zika-usvi/ -VI3 USVI/3/2016 2016-09-26 North America Usvi Saint Thomas Saint Thomas 10807 Black et al fh https://github.com/blab/zika-usvi/ -VI27_1d USVI/27/2016 2016-08-19 North America Usvi Saint Thomas Saint Thomas 10807 Black et al fh https://github.com/blab/zika-usvi/ -VI13 USVI/13/2016 2016-08-13 North America Usvi Saint Thomas Saint Thomas 10636 Black et al fh https://github.com/blab/zika-usvi/ -VI7 USVI/7/2016 2016-10-27 North America Usvi Saint Thomas Saint Thomas 10636 Black et al fh https://github.com/blab/zika-usvi/ -VI38 USVI/38/2016 2016-10-25 North America Usvi Saint Thomas Saint Thomas 10807 Black et al fh https://github.com/blab/zika-usvi/ -VI19_12plex USVI/19/2016 2016-11-21 North America Usvi Saint Croix Saint Croix 10792 Black et al fh https://github.com/blab/zika-usvi/ -VI1_1d USVI/1/2016 2016-09-28 North America Usvi Saint Croix Saint Croix 10792 Black et al fh https://github.com/blab/zika-usvi/ -VI42 USVI/42/2016 2016-10-26 North America Usvi Saint Croix Saint Croix 10807 Black et al fh https://github.com/blab/zika-usvi/ -VI30_1d USVI/30/2016 2016-08-07 North America Usvi Saint Croix Saint Croix 10807 Black et al fh https://github.com/blab/zika-usvi/ -VI2 USVI/2/2016 2016-09-28 North America Usvi Saint Croix Saint Croix 10807 Black et al fh https://github.com/blab/zika-usvi/ +VI44 USVI/44/2016 2016-10-17 North America USVI Saint Thomas Saint Thomas 10807 Black et al fh https://github.com/blab/zika-usvi/ +VI20_12plex USVI/20/2016 2016-10-13 North America USVI Saint Croix Saint Croix 10792 Black et al fh https://github.com/blab/zika-usvi/ +VI41 USVI/41/2016 2016-11-10 North America USVI Saint Croix Saint Croix 10807 Black et al fh https://github.com/blab/zika-usvi/ +VI32_12plex USVI/32/2016 2016-08-11 North America USVI Saint Croix Saint Croix 10792 Black et al fh https://github.com/blab/zika-usvi/ +VI12 USVI/12/2016 2016-11-04 North America USVI Saint Croix Saint Croix 10636 Black et al fh https://github.com/blab/zika-usvi/ +VI46 USVI/46/2016 2016-07-15 North America USVI Saint Thomas Saint Thomas 10807 Black et al fh https://github.com/blab/zika-usvi/ +VI23_12plex USVI/23/2016 2016-07-12 North America USVI Saint Thomas Saint Thomas 10807 Black et al fh https://github.com/blab/zika-usvi/ +VI28_1d USVI/28/2016 2016-11-28 North America USVI Saint Croix Saint Croix 10807 Black et al fh https://github.com/blab/zika-usvi/ +VI45 USVI/45/2016 2016-08-03 North America USVI Saint Thomas Saint Thomas 10807 Black et al fh https://github.com/blab/zika-usvi/ +VI37 USVI/37/2016 2016-10-06 North America USVI Saint Croix Saint Croix 10807 Black et al fh https://github.com/blab/zika-usvi/ +VI39_12plex USVI/39/2016 2016-11-09 North America USVI Saint Croix Saint Croix 10807 Black et al fh https://github.com/blab/zika-usvi/ +VI36 USVI/36/2016 2016-09-13 North America USVI Saint Croix Saint Croix 10807 Black et al fh https://github.com/blab/zika-usvi/ +VI34 USVI/34/2016 2016-08-01 North America USVI Saint Thomas Saint Thomas 10792 Black et al fh https://github.com/blab/zika-usvi/ +VI11 USVI/11/2016 2016-03-22 North America USVI Saint Thomas Saint Thomas 10636 Black et al fh https://github.com/blab/zika-usvi/ +VI6 USVI/6/2016 2016-10-19 North America USVI Saint John Saint John 10636 Black et al fh https://github.com/blab/zika-usvi/ +VI3 USVI/3/2016 2016-09-26 North America USVI Saint Thomas Saint Thomas 10807 Black et al fh https://github.com/blab/zika-usvi/ +VI27_1d USVI/27/2016 2016-08-19 North America USVI Saint Thomas Saint Thomas 10807 Black et al fh https://github.com/blab/zika-usvi/ +VI13 USVI/13/2016 2016-08-13 North America USVI Saint Thomas Saint Thomas 10636 Black et al fh https://github.com/blab/zika-usvi/ +VI7 USVI/7/2016 2016-10-27 North America USVI Saint Thomas Saint Thomas 10636 Black et al fh https://github.com/blab/zika-usvi/ +VI38 USVI/38/2016 2016-10-25 North America USVI Saint Thomas Saint Thomas 10807 Black et al fh https://github.com/blab/zika-usvi/ +VI19_12plex USVI/19/2016 2016-11-21 North America USVI Saint Croix Saint Croix 10792 Black et al fh https://github.com/blab/zika-usvi/ +VI1_1d USVI/1/2016 2016-09-28 North America USVI Saint Croix Saint Croix 10792 Black et al fh https://github.com/blab/zika-usvi/ +VI42 USVI/42/2016 2016-10-26 North America USVI Saint Croix Saint Croix 10807 Black et al fh https://github.com/blab/zika-usvi/ +VI30_1d USVI/30/2016 2016-08-07 North America USVI Saint Croix Saint Croix 10807 Black et al fh https://github.com/blab/zika-usvi/ +VI2 USVI/2/2016 2016-09-28 North America USVI Saint Croix Saint Croix 10807 Black et al fh https://github.com/blab/zika-usvi/