From 810e1d217bc8de7bd233f426a498abbc3bba5e8a Mon Sep 17 00:00:00 2001 From: Jover Lee Date: Tue, 26 Mar 2024 12:14:25 -0700 Subject: [PATCH] phylo: Update config section of README to reflect reality --- phylogenetic/README.md | 8 ++++---- 1 file changed, 4 insertions(+), 4 deletions(-) diff --git a/phylogenetic/README.md b/phylogenetic/README.md index 8076c18..271c81f 100644 --- a/phylogenetic/README.md +++ b/phylogenetic/README.md @@ -27,10 +27,10 @@ Once you've run the build, you can view the results with: ## Configuration -Configuration takes place entirely with the `Snakefile`. This can be read -top-to-bottom, each rule specifies its file inputs and output and also its -parameters. There is little redirection and each rule should be able to be -reasoned with on its own. +Configuration for the workflow takes place entirely within the [defaults/config_zika.yaml](defaults/config_zika.yaml). +The analysis pipeline is contained in [Snakefile](Snakefile) with included [rules](rules). +Each rule specifies its file inputs and output and pulls its parameters from the config. +There is little redirection and each rule should be able to be reasoned with on its own. ### Using GenBank data