From 6e79a4a9ba273d0ca587f109e7f27a9753ffed2f Mon Sep 17 00:00:00 2001
From: Richard Neher <richard.neher@unibas.ch>
Date: Thu, 30 May 2024 09:24:47 +0200
Subject: [PATCH] enable stochastic resolve

---
 workflow/snakemake_rules/core.smk | 1 +
 1 file changed, 1 insertion(+)

diff --git a/workflow/snakemake_rules/core.smk b/workflow/snakemake_rules/core.smk
index c79efbc..9a6fe19 100644
--- a/workflow/snakemake_rules/core.smk
+++ b/workflow/snakemake_rules/core.smk
@@ -201,6 +201,7 @@ rule refine:
             --coalescent {params.coalescent} \
             --date-inference {params.date_inference} \
             --timetree \
+            --stochastic-resolve \
             --use-fft \
             --clock-filter-iqd {params.clock_filter_iqd}
         """