diff --git a/data/nextstrain/mpox/all-clades/pathogen.json b/data/nextstrain/mpox/all-clades/pathogen.json
index 06a19bfd..79ca773d 100644
--- a/data/nextstrain/mpox/all-clades/pathogen.json
+++ b/data/nextstrain/mpox/all-clades/pathogen.json
@@ -206,6 +206,10 @@
     }
   },
   "schemaVersion": "3.0.0",
+  "shortcuts": [
+    "MPXV",
+    "nextstrain/mpox"
+  ],
   "version": {
     "tag": "unreleased"
   }
diff --git a/data/nextstrain/mpox/clade-iib/pathogen.json b/data/nextstrain/mpox/clade-iib/pathogen.json
index ee466470..2386be6e 100644
--- a/data/nextstrain/mpox/clade-iib/pathogen.json
+++ b/data/nextstrain/mpox/clade-iib/pathogen.json
@@ -86,6 +86,9 @@
     }
   },
   "schemaVersion": "3.0.0",
+  "shortcuts": [
+    "hMPXV"
+  ],
   "version": {
     "tag": "unreleased"
   }
diff --git a/data/nextstrain/mpox/lineage-b.1/pathogen.json b/data/nextstrain/mpox/lineage-b.1/pathogen.json
index 5b40438e..26c0f24d 100644
--- a/data/nextstrain/mpox/lineage-b.1/pathogen.json
+++ b/data/nextstrain/mpox/lineage-b.1/pathogen.json
@@ -278,6 +278,9 @@
     }
   },
   "schemaVersion": "3.0.0",
+  "shortcuts": [
+    "hMPXV_B1"
+  ],
   "version": {
     "tag": "unreleased"
   }
diff --git a/data_output/index.json b/data_output/index.json
index 90cacaf1..196e5ccc 100644
--- a/data_output/index.json
+++ b/data_output/index.json
@@ -1162,6 +1162,10 @@
         },
         {
           "path": "nextstrain/mpox/all-clades",
+          "shortcuts": [
+            "MPXV",
+            "nextstrain/mpox"
+          ],
           "enabled": true,
           "attributes": {
             "name": "Mpox virus (All clades)",
@@ -1205,6 +1209,9 @@
         },
         {
           "path": "nextstrain/mpox/clade-iib",
+          "shortcuts": [
+            "hMPXV"
+          ],
           "enabled": true,
           "attributes": {
             "name": "Mpox virus (Clade IIb)",
@@ -1249,6 +1256,9 @@
         },
         {
           "path": "nextstrain/mpox/lineage-b.1",
+          "shortcuts": [
+            "hMPXV_B1"
+          ],
           "enabled": true,
           "attributes": {
             "name": "Mpox virus (Lineage B.1)",
diff --git a/data_output/nextstrain/mpox/all-clades/unreleased/pathogen.json b/data_output/nextstrain/mpox/all-clades/unreleased/pathogen.json
index 06a19bfd..79ca773d 100644
--- a/data_output/nextstrain/mpox/all-clades/unreleased/pathogen.json
+++ b/data_output/nextstrain/mpox/all-clades/unreleased/pathogen.json
@@ -206,6 +206,10 @@
     }
   },
   "schemaVersion": "3.0.0",
+  "shortcuts": [
+    "MPXV",
+    "nextstrain/mpox"
+  ],
   "version": {
     "tag": "unreleased"
   }
diff --git a/data_output/nextstrain/mpox/clade-iib/unreleased/pathogen.json b/data_output/nextstrain/mpox/clade-iib/unreleased/pathogen.json
index ee466470..2386be6e 100644
--- a/data_output/nextstrain/mpox/clade-iib/unreleased/pathogen.json
+++ b/data_output/nextstrain/mpox/clade-iib/unreleased/pathogen.json
@@ -86,6 +86,9 @@
     }
   },
   "schemaVersion": "3.0.0",
+  "shortcuts": [
+    "hMPXV"
+  ],
   "version": {
     "tag": "unreleased"
   }
diff --git a/data_output/nextstrain/mpox/lineage-b.1/unreleased/pathogen.json b/data_output/nextstrain/mpox/lineage-b.1/unreleased/pathogen.json
index 5b40438e..26c0f24d 100644
--- a/data_output/nextstrain/mpox/lineage-b.1/unreleased/pathogen.json
+++ b/data_output/nextstrain/mpox/lineage-b.1/unreleased/pathogen.json
@@ -278,6 +278,9 @@
     }
   },
   "schemaVersion": "3.0.0",
+  "shortcuts": [
+    "hMPXV_B1"
+  ],
   "version": {
     "tag": "unreleased"
   }