From 19e2cd90de50c6c9000c028c6da920396959bcb9 Mon Sep 17 00:00:00 2001 From: ivan-aksamentov Date: Mon, 15 Jan 2024 09:34:30 +0100 Subject: [PATCH 1/2] feat: add shortcuts to sc2 datasets --- data/nextstrain/sars-cov-2/BA.2/pathogen.json | 3 ++- data/nextstrain/sars-cov-2/wuhan-hu-1/orfs/pathogen.json | 3 ++- 2 files changed, 4 insertions(+), 2 deletions(-) diff --git a/data/nextstrain/sars-cov-2/BA.2/pathogen.json b/data/nextstrain/sars-cov-2/BA.2/pathogen.json index 99d8b078..d4f6bdb1 100644 --- a/data/nextstrain/sars-cov-2/BA.2/pathogen.json +++ b/data/nextstrain/sars-cov-2/BA.2/pathogen.json @@ -223215,5 +223215,6 @@ "attributes": { "name": "SARS-CoV-2 (BA.2)", "reference name": "Wuhan-Hu-1 with BA.2 SNPs" - } + }, + "shortcuts": ["sars-cov-2-21L"] } diff --git a/data/nextstrain/sars-cov-2/wuhan-hu-1/orfs/pathogen.json b/data/nextstrain/sars-cov-2/wuhan-hu-1/orfs/pathogen.json index 21c7b362..d4bec28e 100644 --- a/data/nextstrain/sars-cov-2/wuhan-hu-1/orfs/pathogen.json +++ b/data/nextstrain/sars-cov-2/wuhan-hu-1/orfs/pathogen.json @@ -6435,5 +6435,6 @@ "name": "SARS-CoV-2", "reference name": "Wuhan-Hu-1/2019", "reference accession": "MN908947" - } + }, + "shortcuts": ["sars-cov-2"] } From b402c8c5bf613fe4a2db314e114b8804be19f090 Mon Sep 17 00:00:00 2001 From: nextstrain-bot Date: Mon, 15 Jan 2024 08:36:16 +0000 Subject: [PATCH 2/2] chore: rebuild [skip ci] --- data/nextstrain/sars-cov-2/BA.2/pathogen.json | 4 +++- data/nextstrain/sars-cov-2/wuhan-hu-1/orfs/pathogen.json | 4 +++- data_output/index.json | 6 ++++++ .../nextstrain/sars-cov-2/BA.2/unreleased/pathogen.json | 5 ++++- .../sars-cov-2/wuhan-hu-1/orfs/unreleased/pathogen.json | 5 ++++- 5 files changed, 20 insertions(+), 4 deletions(-) diff --git a/data/nextstrain/sars-cov-2/BA.2/pathogen.json b/data/nextstrain/sars-cov-2/BA.2/pathogen.json index d4f6bdb1..b012394a 100644 --- a/data/nextstrain/sars-cov-2/BA.2/pathogen.json +++ b/data/nextstrain/sars-cov-2/BA.2/pathogen.json @@ -223216,5 +223216,7 @@ "name": "SARS-CoV-2 (BA.2)", "reference name": "Wuhan-Hu-1 with BA.2 SNPs" }, - "shortcuts": ["sars-cov-2-21L"] + "shortcuts": [ + "sars-cov-2-21L" + ] } diff --git a/data/nextstrain/sars-cov-2/wuhan-hu-1/orfs/pathogen.json b/data/nextstrain/sars-cov-2/wuhan-hu-1/orfs/pathogen.json index d4bec28e..c66fc205 100644 --- a/data/nextstrain/sars-cov-2/wuhan-hu-1/orfs/pathogen.json +++ b/data/nextstrain/sars-cov-2/wuhan-hu-1/orfs/pathogen.json @@ -6436,5 +6436,7 @@ "reference name": "Wuhan-Hu-1/2019", "reference accession": "MN908947" }, - "shortcuts": ["sars-cov-2"] + "shortcuts": [ + "sars-cov-2" + ] } diff --git a/data_output/index.json b/data_output/index.json index 196e5ccc..0f78f0ab 100644 --- a/data_output/index.json +++ b/data_output/index.json @@ -26,6 +26,9 @@ "datasets": [ { "path": "nextstrain/sars-cov-2/wuhan-hu-1/orfs", + "shortcuts": [ + "sars-cov-2" + ], "enabled": true, "attributes": { "name": "SARS-CoV-2", @@ -168,6 +171,9 @@ }, { "path": "nextstrain/sars-cov-2/BA.2", + "shortcuts": [ + "sars-cov-2-21L" + ], "enabled": true, "attributes": { "name": "SARS-CoV-2 (BA.2)", diff --git a/data_output/nextstrain/sars-cov-2/BA.2/unreleased/pathogen.json b/data_output/nextstrain/sars-cov-2/BA.2/unreleased/pathogen.json index 99d8b078..b012394a 100644 --- a/data_output/nextstrain/sars-cov-2/BA.2/unreleased/pathogen.json +++ b/data_output/nextstrain/sars-cov-2/BA.2/unreleased/pathogen.json @@ -223215,5 +223215,8 @@ "attributes": { "name": "SARS-CoV-2 (BA.2)", "reference name": "Wuhan-Hu-1 with BA.2 SNPs" - } + }, + "shortcuts": [ + "sars-cov-2-21L" + ] } diff --git a/data_output/nextstrain/sars-cov-2/wuhan-hu-1/orfs/unreleased/pathogen.json b/data_output/nextstrain/sars-cov-2/wuhan-hu-1/orfs/unreleased/pathogen.json index 21c7b362..c66fc205 100644 --- a/data_output/nextstrain/sars-cov-2/wuhan-hu-1/orfs/unreleased/pathogen.json +++ b/data_output/nextstrain/sars-cov-2/wuhan-hu-1/orfs/unreleased/pathogen.json @@ -6435,5 +6435,8 @@ "name": "SARS-CoV-2", "reference name": "Wuhan-Hu-1/2019", "reference accession": "MN908947" - } + }, + "shortcuts": [ + "sars-cov-2" + ] }