From 60f4c239569a97926087c6a8eb22f6d314980fad Mon Sep 17 00:00:00 2001 From: Cornelius Roemer Date: Fri, 18 Oct 2024 19:58:18 +0200 Subject: [PATCH 1/2] feat: designate clade 24H (LF.7) --- defaults/clade_display_names.yml | 1 + defaults/clade_emergence_dates.tsv | 1 + defaults/clade_hierarchy.tsv | 1 + defaults/clades.tsv | 4 ++++ defaults/color_ordering.tsv | 1 + 5 files changed, 8 insertions(+) diff --git a/defaults/clade_display_names.yml b/defaults/clade_display_names.yml index fbfa1ae7d..98cbf2dee 100644 --- a/defaults/clade_display_names.yml +++ b/defaults/clade_display_names.yml @@ -45,3 +45,4 @@ 24E: 24E (KP.3.1.1) 24F: 24F (XEC) 24G: 24G (KP.2.3) +24H: 24H (LF.7) diff --git a/defaults/clade_emergence_dates.tsv b/defaults/clade_emergence_dates.tsv index 5b23745c6..c57065e18 100644 --- a/defaults/clade_emergence_dates.tsv +++ b/defaults/clade_emergence_dates.tsv @@ -47,3 +47,4 @@ Nextstrain_clade first_sequence 24E 2023-12-01 24F 2024-05-01 24G 2024-01-01 +24H 2024-05-01 diff --git a/defaults/clade_hierarchy.tsv b/defaults/clade_hierarchy.tsv index b782d1b8c..18f1222eb 100644 --- a/defaults/clade_hierarchy.tsv +++ b/defaults/clade_hierarchy.tsv @@ -45,3 +45,4 @@ clade parent WHO 24E 24C Omicron 24F 24A Omicron 24G 24B Omicron +24H 24A Omicron diff --git a/defaults/clades.tsv b/defaults/clades.tsv index 0d87646b4..f2fd192eb 100644 --- a/defaults/clades.tsv +++ b/defaults/clades.tsv @@ -257,3 +257,7 @@ clade gene site alt 24G clade 24B 24G nuc 22599 C 24G nuc 25593 T + +24H clade 24A +24H nuc 16600 C +24H nuc 12892 A diff --git a/defaults/color_ordering.tsv b/defaults/color_ordering.tsv index d90c42f7c..a4d5f4854 100644 --- a/defaults/color_ordering.tsv +++ b/defaults/color_ordering.tsv @@ -34045,6 +34045,7 @@ clade_membership 24D (XDV.1) clade_membership 24E (KP.3.1.1) clade_membership 24F (XEC) clade_membership 24G (KP.2.3) +clade_membership 24H (LF.7) ################ From 47b884d3771cd6f3dc8f4a5f28d2c04c8875ad9d Mon Sep 17 00:00:00 2001 From: Cornelius Roemer Date: Tue, 5 Nov 2024 17:33:19 +0100 Subject: [PATCH 2/2] Add 24I (MV.1) --- defaults/clade_display_names.yml | 1 + defaults/clade_emergence_dates.tsv | 1 + defaults/clade_hierarchy.tsv | 1 + defaults/clades.tsv | 5 +++++ defaults/color_ordering.tsv | 1 + 5 files changed, 9 insertions(+) diff --git a/defaults/clade_display_names.yml b/defaults/clade_display_names.yml index 98cbf2dee..ac05d0e29 100644 --- a/defaults/clade_display_names.yml +++ b/defaults/clade_display_names.yml @@ -46,3 +46,4 @@ 24F: 24F (XEC) 24G: 24G (KP.2.3) 24H: 24H (LF.7) +24I: 24I (MV.1) diff --git a/defaults/clade_emergence_dates.tsv b/defaults/clade_emergence_dates.tsv index c57065e18..773e35d79 100644 --- a/defaults/clade_emergence_dates.tsv +++ b/defaults/clade_emergence_dates.tsv @@ -48,3 +48,4 @@ Nextstrain_clade first_sequence 24F 2024-05-01 24G 2024-01-01 24H 2024-05-01 +24I 2024-05-01 diff --git a/defaults/clade_hierarchy.tsv b/defaults/clade_hierarchy.tsv index 18f1222eb..dc4e52c6d 100644 --- a/defaults/clade_hierarchy.tsv +++ b/defaults/clade_hierarchy.tsv @@ -46,3 +46,4 @@ clade parent WHO 24F 24A Omicron 24G 24B Omicron 24H 24A Omicron +24I 24A Omicron diff --git a/defaults/clades.tsv b/defaults/clades.tsv index f2fd192eb..c519d3acb 100644 --- a/defaults/clades.tsv +++ b/defaults/clades.tsv @@ -261,3 +261,8 @@ clade gene site alt 24H clade 24A 24H nuc 16600 C 24H nuc 12892 A + +24I clade 24A +24I nuc 936 T +24I nuc 7393 T +24I nuc 22995 C diff --git a/defaults/color_ordering.tsv b/defaults/color_ordering.tsv index a4d5f4854..d62d46433 100644 --- a/defaults/color_ordering.tsv +++ b/defaults/color_ordering.tsv @@ -34046,6 +34046,7 @@ clade_membership 24E (KP.3.1.1) clade_membership 24F (XEC) clade_membership 24G (KP.2.3) clade_membership 24H (LF.7) +clade_membership 24I (MV.1) ################