From f3fe0c1950bf76c6233d7f5b014769ffd3b0912a Mon Sep 17 00:00:00 2001
From: Kim Andrews <17375001+kimandrews@users.noreply.github.com>
Date: Fri, 16 Feb 2024 16:21:42 -0800
Subject: [PATCH] ingest: Move intermediate file to `data` directory Change the
 output folder for all_metadata.tsv from ./results to ./data Follow up to
 [nextstrain/measles#10
 (comment)](https://github.com/nextstrain/measles/pull/10#discussion_r1485642624)

---
 ingest/rules/curate.smk | 6 +++---
 1 file changed, 3 insertions(+), 3 deletions(-)

diff --git a/ingest/rules/curate.smk b/ingest/rules/curate.smk
index 42b9b56..3e0997d 100644
--- a/ingest/rules/curate.smk
+++ b/ingest/rules/curate.smk
@@ -7,7 +7,7 @@ REQUIRED INPUTS:
 
 OUTPUTS:
 
-    metadata    = results/subset_metadata.tsv
+    metadata    = results/metadata.tsv
     sequences   = results/sequences.fasta
 
 """
@@ -61,7 +61,7 @@ rule curate:
         all_geolocation_rules="data/all-geolocation-rules.tsv",
         annotations=config["curate"]["annotations"],
     output:
-        metadata="results/all_metadata.tsv",
+        metadata="data/all_metadata.tsv",
         sequences="results/sequences.fasta",
     log:
         "logs/curate.txt",
@@ -118,7 +118,7 @@ rule curate:
 
 rule subset_metadata:
     input:
-        metadata="results/all_metadata.tsv",
+        metadata="data/all_metadata.tsv",
     output:
         subset_metadata="results/metadata.tsv",
     params: