diff --git a/ingest/rules/curate.smk b/ingest/rules/curate.smk index 42b9b56..3e0997d 100644 --- a/ingest/rules/curate.smk +++ b/ingest/rules/curate.smk @@ -7,7 +7,7 @@ REQUIRED INPUTS: OUTPUTS: - metadata = results/subset_metadata.tsv + metadata = results/metadata.tsv sequences = results/sequences.fasta """ @@ -61,7 +61,7 @@ rule curate: all_geolocation_rules="data/all-geolocation-rules.tsv", annotations=config["curate"]["annotations"], output: - metadata="results/all_metadata.tsv", + metadata="data/all_metadata.tsv", sequences="results/sequences.fasta", log: "logs/curate.txt", @@ -118,7 +118,7 @@ rule curate: rule subset_metadata: input: - metadata="results/all_metadata.tsv", + metadata="data/all_metadata.tsv", output: subset_metadata="results/metadata.tsv", params: