diff --git a/.gitignore b/.gitignore index b653f7d..7c37fa7 100644 --- a/.gitignore +++ b/.gitignore @@ -1,18 +1,17 @@ -# Files created by the pipeline, which we want to keep out of git -# (or at least out of _this_ git repo). +# Files created by workflows that we usually want to keep out of git +auspice/ +builds/ data/ results/ -auspice/ -build/ +logs/ +benchmarks/ # Sensitive environment variables environment* +env.d/ -# Snakemake state dir -/.snakemake - -# Local config overrides -/config_local.yaml +# Snakemake +.snakemake/ # For Python # ############## @@ -39,3 +38,14 @@ environment* Icon? ehthumbs.db Thumbs.db +*~ + +# IDE generated files # +###################### +.vscode/ + +# nohup output +nohup.out + +# cluster logs +slurm-*