This repo is currently experimental and the results are not scientifically accurate (most significantly, recombination has not been accounted for). Latest available trees: genotype A, genotype B, genotype C, genotype D, all 11k genomes
Based on Katie Kistler's work in blab/adaptive-evolution
This repository contains two workflows for the analysis of HBV virus data:
ingest/- Download data from GenBank, curate metadata, rotate genomes, align and infer genotypes using Nextcladephylogenetic/- Filter sequences, construct phylogeny and export for visualization
Each folder contains a README.md with more information.