From 845bfc6fe9f52a4df8679f6217c62294c85ce83f Mon Sep 17 00:00:00 2001 From: Victor Lin <13424970+victorlin@users.noreply.github.com> Date: Thu, 10 Oct 2024 12:41:57 -0700 Subject: [PATCH] Fix broken link to influenza naming conventions The old link returned 404 with a client-side redirection to the new link. --- .../creating-a-pathogen-repo/creating-an-ingest-workflow.rst | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/src/tutorials/creating-a-pathogen-repo/creating-an-ingest-workflow.rst b/src/tutorials/creating-a-pathogen-repo/creating-an-ingest-workflow.rst index 6cad602b..22e7dfce 100644 --- a/src/tutorials/creating-a-pathogen-repo/creating-an-ingest-workflow.rst +++ b/src/tutorials/creating-a-pathogen-repo/creating-an-ingest-workflow.rst @@ -414,7 +414,7 @@ If you write a custom script that follows the same pattern, you can add your scr curation pipeline before the final ``augur curate apply-record-annotations`` command. A typical pathogen-specific step for curation is the standardization of strain names since pathogens usually have different naming conventions -(e.g. `influenza `_ vs `measles `_). +(e.g. `influenza `_ vs `measles `_). For example, we've added a step in the curation pipeline to normalize the strain names for the `Zika ingest workflow `_. 1. We added a `custom Python script `_