From 901c5725439918aaa154da8c1ddc2777082caa7c Mon Sep 17 00:00:00 2001
From: Victor Lin <13424970+victorlin@users.noreply.github.com>
Date: Thu, 22 Dec 2022 15:46:55 -0500
Subject: [PATCH] Add libgomp1 for running FastTree
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As far as I can tell from the official software page¹, no dependencies
are documented.

However, there are (unofficial?) Linux packages²³ that list libc6 and
libgomp1 as dependencies. Adding the latter for now since `augur tree
--method fasttree` fails with the error:

    FastTreeDblMP: error while loading shared libraries: libgomp.so.1: cannot open shared object file: No such file or directory

¹ http://www.microbesonline.org/fasttree/
² https://packages.ubuntu.com/focal/fasttree
³ https://packages.debian.org/sid/science/fasttree
---
 Dockerfile | 2 ++
 1 file changed, 2 insertions(+)

diff --git a/Dockerfile b/Dockerfile
index 84c91790..6585ff23 100644
--- a/Dockerfile
+++ b/Dockerfile
@@ -271,6 +271,7 @@ FROM python:3.10-slim-bullseye AS final
 # dos2unix: tsv-utils needs unix line endings
 # jq: may be used by workflows
 # less: for usability in an interactive prompt
+# libgomp1: for running FastTree
 # libsqlite3: for pyfastx (for Augur)
 # perl: for running VCFtools
 # ruby: may be used by workflows
@@ -285,6 +286,7 @@ RUN apt-get update && apt-get install -y --no-install-recommends \
         gzip \
         jq \
         less \
+        libgomp1 \
         libsqlite3-0 \
         perl \
         ruby \