From a3f0eaf54e6649e4127dd2d8e530b33bb2dcd391 Mon Sep 17 00:00:00 2001 From: Thomas Sibley Date: Wed, 4 Sep 2024 11:47:57 -0700 Subject: [PATCH] Add the SQLite CLI for `augur merge` MIME-Version: 1.0 Content-Type: text/plain; charset=UTF-8 Content-Transfer-Encoding: 8bit Ideally this would have been added before or as Augur 25.3.0—the first version to include `augur merge`—was packaged into this runtime, but I plain forgot. --- Dockerfile | 2 ++ 1 file changed, 2 insertions(+) diff --git a/Dockerfile b/Dockerfile index 0e879bb..6cf66db 100644 --- a/Dockerfile +++ b/Dockerfile @@ -366,6 +366,7 @@ SHELL ["/bin/bash", "-e", "-u", "-o", "pipefail", "-c"] # libsqlite3: for pyfastx (for Augur) # perl: for running VCFtools # ruby: may be used by workflows +# sqlite3: for `augur merge` # wget: may be used by workflows # zlib1g: for pyfastx (for Augur) # nodejs: for running Auspice @@ -382,6 +383,7 @@ RUN apt-get update && apt-get install -y --no-install-recommends \ libsqlite3-0 \ perl \ ruby \ + sqlite3 \ util-linux \ wget \ xz-utils \