From 78d0ba7947ebdb93eaed14fbd5ce1592e0f4b885 Mon Sep 17 00:00:00 2001
From: Jover Lee <joverlee521@gmail.com>
Date: Tue, 31 Dec 2024 10:27:18 -0800
Subject: [PATCH] h5n1-cattle-outbreak: loosen genome_clock_filter_iqd

Loosening the genome_clock_filter_iqd because the important human
sequences have been filtered out by the clock filter in the latest
builds.

<https://bedfordlab.slack.com/archives/CD84ELG0N/p1735438616520059>
---
 config/h5n1-cattle-outbreak.yaml | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/config/h5n1-cattle-outbreak.yaml b/config/h5n1-cattle-outbreak.yaml
index fc07d39..bd0d396 100644
--- a/config/h5n1-cattle-outbreak.yaml
+++ b/config/h5n1-cattle-outbreak.yaml
@@ -76,7 +76,7 @@ refine:
   date_inference: marginal
 
   genome_clock_filter_iqd:
-    FALLBACK: 3
+    FALLBACK: 6
   clock_filter_iqd:
     FALLBACK: false
 
@@ -130,7 +130,7 @@ traits:
     FALLBACK: false
 
   # all builds
-  confidence: 
+  confidence:
     FALLBACK: true
 
 export: