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Update pinned dependencies #1535
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We could potentially look into dependabot for pip, but first we'd have to migrate away from setup.py towards pyproject.toml - maybe not a bad idea for the long run, but I don't know what side effects/downsides there might be. setup.py is not supported by dependabot. |
Actually I might be wrong - setup.py is potentially supported: https://github.com/nextstrain/augur/network/dependencies From simonw: https://til.simonwillison.net/github/dependabot-python-setup
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Dependencies are pinned to reduce the need for urgent code compatibility updates on every breaking change from a dependency. We should still be keeping the code compatible with latest versions of dependencies, just at our own pace. Otherwise Augur will become hard to install in environments where users prefer to use latest versions of these dependencies.
This issue aims to go through the list once, but this should be done regularly.
Tasks
export
crashes withKeyError: 'tree'
when jsonschema v4 is installed #1358References
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