diff --git a/CHANGES.md b/CHANGES.md index f9497381b..9d209f767 100644 --- a/CHANGES.md +++ b/CHANGES.md @@ -2,13 +2,16 @@ ## __NEXT__ +### Features + +* ancestral: Add `--seed` argument to enable deterministic inference of root states by TreeTime. [#1690][] (@huddlej) + ### Bug Fixes -* Explicitly specify how the root and ambiguous states are handled during sequence reconstruction and mutation counting. Fixes issue [#1689][] (@rneher) and was resolved in PR [#1690][]. +* ancestral, refine: Explicitly specify how the root and ambiguous states are handled during sequence reconstruction and mutation counting. [#1690][] (@rneher) * titers: Fix type errors in code associated with cross-validation of models. [#1688][] (@huddlej) [#1688]: https://github.com/nextstrain/augur/pull/1688 -[#1689]: https://github.com/nextstrain/augur/pull/1689 [#1690]: https://github.com/nextstrain/augur/pull/1690 ## 27.0.0 (9 December 2024) @@ -32,8 +35,8 @@ ### Features -- This is the first version to officially support Python 3.12 and Pandas v2. [#1671] [#1678] (@corneliusroemer, @victorlin) -- curate: change output metadata to [RFC 4180 CSV-like TSVs][] to match the TSV format output by other Augur subcommands and the Nextstrain ecosystem as discussed in [#1566][]. [#1565][] (@joverlee521) +* This is the first version to officially support Python 3.12 and Pandas v2. [#1671] [#1678] (@corneliusroemer, @victorlin) +* curate: change output metadata to [RFC 4180 CSV-like TSVs][] to match the TSV format output by other Augur subcommands and the Nextstrain ecosystem as discussed in [#1566][]. [#1565][] (@joverlee521) [#1565]: https://github.com/nextstrain/augur/pull/1565 [#1566]: https://github.com/nextstrain/augur/issues/1566