From 5b717d6f698053b877824885a0f3305f5dbd273d Mon Sep 17 00:00:00 2001 From: John Huddleston Date: Thu, 19 Dec 2024 08:29:20 -0800 Subject: [PATCH] Update change log --- CHANGES.md | 13 +++++++++---- 1 file changed, 9 insertions(+), 4 deletions(-) diff --git a/CHANGES.md b/CHANGES.md index 6e6efd92a..0cbbae210 100644 --- a/CHANGES.md +++ b/CHANGES.md @@ -2,17 +2,22 @@ ## __NEXT__ -- Explicitly specify how the root and ambiguous states are handled during sequence reconstruction and mutation counting. Fixes issue [#1689][] (@rneher) and was resolved in PR [#1690][]. +### Features + +* ancestral: Add `--seed` argument to enable deterministic inference of root states by TreeTime. [#1690][] (@huddlej) + +### Bug Fixes + +* ancestral, refine: Explicitly specify how the root and ambiguous states are handled during sequence reconstruction and mutation counting. [#1690][] (@rneher) -[#1689]: https://github.com/nextstrain/augur/pull/1689 [#1690]: https://github.com/nextstrain/augur/pull/1690 ## 26.2.0 (20 November 2024) ### Features -- This is the first version to officially support Python 3.12 and Pandas v2. [#1671] [#1678] (@corneliusroemer, @victorlin) -- curate: change output metadata to [RFC 4180 CSV-like TSVs][] to match the TSV format output by other Augur subcommands and the Nextstrain ecosystem as discussed in [#1566][]. [#1565][] (@joverlee521) +* This is the first version to officially support Python 3.12 and Pandas v2. [#1671] [#1678] (@corneliusroemer, @victorlin) +* curate: change output metadata to [RFC 4180 CSV-like TSVs][] to match the TSV format output by other Augur subcommands and the Nextstrain ecosystem as discussed in [#1566][]. [#1565][] (@joverlee521) [#1565]: https://github.com/nextstrain/augur/pull/1565 [#1566]: https://github.com/nextstrain/augur/issues/1566