diff --git a/docs/usage/cli/curate/abbreviate-authors.rst b/docs/usage/cli/curate/abbreviate-authors.rst new file mode 100644 index 000000000..0597b0093 --- /dev/null +++ b/docs/usage/cli/curate/abbreviate-authors.rst @@ -0,0 +1,9 @@ +================== +abbreviate-authors +================== + +.. argparse:: + :module: augur + :func: make_parser + :prog: augur + :path: curate abbreviate-authors diff --git a/docs/usage/cli/curate/apply-geolocation-rules.rst b/docs/usage/cli/curate/apply-geolocation-rules.rst new file mode 100644 index 000000000..fc90cd517 --- /dev/null +++ b/docs/usage/cli/curate/apply-geolocation-rules.rst @@ -0,0 +1,9 @@ +======================= +apply-geolocation-rules +======================= + +.. argparse:: + :module: augur + :func: make_parser + :prog: augur + :path: curate apply-geolocation-rules diff --git a/docs/usage/cli/curate/apply-record-annotations.rst b/docs/usage/cli/curate/apply-record-annotations.rst new file mode 100644 index 000000000..0e5318bc3 --- /dev/null +++ b/docs/usage/cli/curate/apply-record-annotations.rst @@ -0,0 +1,9 @@ +======================== +apply-record-annotations +======================== + +.. argparse:: + :module: augur + :func: make_parser + :prog: augur + :path: curate apply-record-annotations diff --git a/docs/usage/cli/curate/index.rst b/docs/usage/cli/curate/index.rst index ab8d2f0b8..a83bd1ce3 100644 --- a/docs/usage/cli/curate/index.rst +++ b/docs/usage/cli/curate/index.rst @@ -16,8 +16,13 @@ We will continue to add more subcommands as we identify other common data curati .. toctree:: :maxdepth: 1 + passthru normalize-strings - titlecase format-dates - passthru + titlecase + apply-geolocation-rules + apply-record-annotations + abbreviate-authors + parse-genbank-location + transform-strain-name diff --git a/docs/usage/cli/curate/parse-genbank-location.rst b/docs/usage/cli/curate/parse-genbank-location.rst new file mode 100644 index 000000000..1ef23dc81 --- /dev/null +++ b/docs/usage/cli/curate/parse-genbank-location.rst @@ -0,0 +1,9 @@ +====================== +parse-genbank-location +====================== + +.. argparse:: + :module: augur + :func: make_parser + :prog: augur + :path: curate parse-genbank-location diff --git a/docs/usage/cli/curate/transform-strain-name.rst b/docs/usage/cli/curate/transform-strain-name.rst new file mode 100644 index 000000000..b12a2cfc9 --- /dev/null +++ b/docs/usage/cli/curate/transform-strain-name.rst @@ -0,0 +1,9 @@ +===================== +transform-strain-name +===================== + +.. argparse:: + :module: augur + :func: make_parser + :prog: augur + :path: curate transform-strain-name