From 1a405ca8318d3d4c04f152acc9d50de516890f03 Mon Sep 17 00:00:00 2001
From: "dependabot[bot]" <49699333+dependabot[bot]@users.noreply.github.com>
Date: Mon, 5 Feb 2024 20:27:28 +0000
Subject: [PATCH 1/2] build(deps): bump actions/upload-artifact from 3 to 4

Bumps [actions/upload-artifact](https://github.com/actions/upload-artifact) from 3 to 4.
- [Release notes](https://github.com/actions/upload-artifact/releases)
- [Commits](https://github.com/actions/upload-artifact/compare/v3...v4)

---
updated-dependencies:
- dependency-name: actions/upload-artifact
  dependency-type: direct:production
  update-type: version-update:semver-major
...

Signed-off-by: dependabot[bot] <support@github.com>
---
 .github/workflows/pathogen-repo-build.yaml | 2 +-
 .github/workflows/pathogen-repo-ci.yaml    | 2 +-
 2 files changed, 2 insertions(+), 2 deletions(-)

diff --git a/.github/workflows/pathogen-repo-build.yaml b/.github/workflows/pathogen-repo-build.yaml
index e0a1faa..fc6299a 100644
--- a/.github/workflows/pathogen-repo-build.yaml
+++ b/.github/workflows/pathogen-repo-build.yaml
@@ -221,7 +221,7 @@ jobs:
           > "$GITHUB_STEP_SUMMARY"
 
       - if: always()
-        uses: actions/upload-artifact@v3
+        uses: actions/upload-artifact@v4
         with:
           if-no-files-found: warn
           name: ${{ inputs.artifact-name }}
diff --git a/.github/workflows/pathogen-repo-ci.yaml b/.github/workflows/pathogen-repo-ci.yaml
index 753a4b3..3eb8043 100644
--- a/.github/workflows/pathogen-repo-ci.yaml
+++ b/.github/workflows/pathogen-repo-ci.yaml
@@ -239,7 +239,7 @@ jobs:
       - run: nextstrain build . ${{ inputs.build-args }}
 
       - if: always()
-        uses: actions/upload-artifact@v3
+        uses: actions/upload-artifact@v4
         with:
           name: ${{ inputs.artifact-name }}-${{ matrix.runtime }}
           path: |

From c3c94c055b004b76ba8578940ffc0397c92c97b4 Mon Sep 17 00:00:00 2001
From: Victor Lin <13424970+victorlin@users.noreply.github.com>
Date: Mon, 5 Feb 2024 12:50:29 -0800
Subject: [PATCH 2/2] Set artifact-name for multiple invocations of
 pathogen-repo-ci

From the input description:

    If you're invoking this workflow multiple times from the same calling
    workflow, you should set this.
---
 .github/workflows/ci.yaml | 3 +++
 1 file changed, 3 insertions(+)

diff --git a/.github/workflows/ci.yaml b/.github/workflows/ci.yaml
index 35b290f..db532cc 100644
--- a/.github/workflows/ci.yaml
+++ b/.github/workflows/ci.yaml
@@ -23,17 +23,20 @@ jobs:
       # subdirs (i.e. for our new repo layout).
       #   -trs, 30 Jan 2024
       repo: nextstrain/ebola
+      artifact-name: outputs-test-pathogen-repo-ci
     secrets: inherit
 
   test-pathogen-repo-ci-no-example-data:
     uses: ./.github/workflows/pathogen-repo-ci.yaml
     with:
       repo: nextstrain/zika-tutorial
+      artifact-name: outputs-test-pathogen-repo-ci-no-example-data
 
   test-pathogen-repo-ci-failure:
     uses: ./.github/workflows/pathogen-repo-ci.yaml
     with:
       repo: nextstrain/zika-tutorial
+      artifact-name: outputs-test-pathogen-repo-ci-failure
       build-args: __BOGUS_BUILD_TARGET__
       continue-on-error: true