From 99e052382c1e3f97ec2f1882bcdeaf95e42e645e Mon Sep 17 00:00:00 2001
From: Jover Lee <joverlee521@gmail.com>
Date: Wed, 14 Feb 2024 16:26:44 -0800
Subject: [PATCH] pathogen-repo-build: Bump minimum Nextstrain CLI version to
 8.3.0
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Ensure support for pathogen repo builds with the latest changes:

* support for workflows in subdirectories¹
* support for setting runtime envvars via `NEXTSTRAIN_RUNTIME_ENVDIRS`²

¹ <https://github.com/nextstrain/cli/releases/tag/8.2.0>
² <https://github.com/nextstrain/cli/releases/tag/8.3.0>
---
 .github/workflows/pathogen-repo-build.yaml    | 12 ++++++------
 .github/workflows/pathogen-repo-build.yaml.in |  2 +-
 2 files changed, 7 insertions(+), 7 deletions(-)

diff --git a/.github/workflows/pathogen-repo-build.yaml b/.github/workflows/pathogen-repo-build.yaml
index 3db5fa1..a3a418d 100644
--- a/.github/workflows/pathogen-repo-build.yaml
+++ b/.github/workflows/pathogen-repo-build.yaml
@@ -266,7 +266,7 @@ jobs:
       - name: Setup runtime ${{ inputs.runtime }}
         uses: ./.git/nextstrain/.github/actions/setup-nextstrain-cli
         with:
-          cli-version: ">=7.4.0"
+          cli-version: ">=8.3.0"
           runtime: ${{ inputs.runtime }}
       - name: Run build via ${{ inputs.runtime }}
         env:
@@ -341,7 +341,7 @@ jobs:
       - name: Setup runtime ${{ inputs.runtime }}
         uses: ./.git/nextstrain/.github/actions/setup-nextstrain-cli
         with:
-          cli-version: ">=7.4.0"
+          cli-version: ">=8.3.0"
           runtime: ${{ inputs.runtime }}
       - id: attach
         name: Attach to AWS Batch job
@@ -398,7 +398,7 @@ jobs:
       - name: Setup runtime ${{ inputs.runtime }}
         uses: ./.git/nextstrain/.github/actions/setup-nextstrain-cli
         with:
-          cli-version: ">=7.4.0"
+          cli-version: ">=8.3.0"
           runtime: ${{ inputs.runtime }}
       - id: attach
         name: Attach to AWS Batch job
@@ -456,7 +456,7 @@ jobs:
       - name: Setup runtime ${{ inputs.runtime }}
         uses: ./.git/nextstrain/.github/actions/setup-nextstrain-cli
         with:
-          cli-version: ">=7.4.0"
+          cli-version: ">=8.3.0"
           runtime: ${{ inputs.runtime }}
       - id: attach
         name: Attach to AWS Batch job
@@ -514,7 +514,7 @@ jobs:
       - name: Setup runtime ${{ inputs.runtime }}
         uses: ./.git/nextstrain/.github/actions/setup-nextstrain-cli
         with:
-          cli-version: ">=7.4.0"
+          cli-version: ">=8.3.0"
           runtime: ${{ inputs.runtime }}
       - id: attach
         name: Attach to AWS Batch job
@@ -595,7 +595,7 @@ jobs:
       - name: Setup runtime ${{ inputs.runtime }}
         uses: ./.git/nextstrain/.github/actions/setup-nextstrain-cli
         with:
-          cli-version: ">=7.4.0"
+          cli-version: ">=8.3.0"
           runtime: ${{ inputs.runtime }}
       - id: cancel
         name: Cancel AWS Batch job
diff --git a/.github/workflows/pathogen-repo-build.yaml.in b/.github/workflows/pathogen-repo-build.yaml.in
index 0e2a618..dac5e9c 100644
--- a/.github/workflows/pathogen-repo-build.yaml.in
+++ b/.github/workflows/pathogen-repo-build.yaml.in
@@ -232,7 +232,7 @@ jobs:
         name: Setup runtime ${{ inputs.runtime }}
         uses: ./.git/nextstrain/.github/actions/setup-nextstrain-cli
         with:
-          cli-version: ">=7.4.0"
+          cli-version: ">=8.3.0"
           runtime: ${{ inputs.runtime }}
 
       - name: Run build via ${{ inputs.runtime }}