diff --git a/.buildinfo b/.buildinfo
index 0ab98145..66b68e6d 100644
--- a/.buildinfo
+++ b/.buildinfo
@@ -1,4 +1,4 @@
 # Sphinx build info version 1
 # This file hashes the configuration used when building these files. When it is not found, a full rebuild will be done.
-config: e7aad666af5957945f0cb7dcbedca394
+config: 0825e4f919f5f738f1b4e255bd30900d
 tags: 645f666f9bcd5a90fca523b33c5a78b7
diff --git a/.doctrees/auto_examples/load_and_explore_poses.doctree b/.doctrees/auto_examples/load_and_explore_poses.doctree
index 4cd3d1ef..51f222cf 100644
Binary files a/.doctrees/auto_examples/load_and_explore_poses.doctree and b/.doctrees/auto_examples/load_and_explore_poses.doctree differ
diff --git a/.doctrees/auto_examples/sg_execution_times.doctree b/.doctrees/auto_examples/sg_execution_times.doctree
index 4ab81c98..d52d4a89 100644
Binary files a/.doctrees/auto_examples/sg_execution_times.doctree and b/.doctrees/auto_examples/sg_execution_times.doctree differ
diff --git a/.doctrees/contributing.doctree b/.doctrees/contributing.doctree
index cf9513ac..fb5c71e1 100644
Binary files a/.doctrees/contributing.doctree and b/.doctrees/contributing.doctree differ
diff --git a/.doctrees/environment.pickle b/.doctrees/environment.pickle
index d931df08..832a8037 100644
Binary files a/.doctrees/environment.pickle and b/.doctrees/environment.pickle differ
diff --git a/_downloads/07fcc19ba03226cd3d83d4e40ec44385/auto_examples_python.zip b/_downloads/07fcc19ba03226cd3d83d4e40ec44385/auto_examples_python.zip
index c7a1d8eb..23e51c3a 100644
Binary files a/_downloads/07fcc19ba03226cd3d83d4e40ec44385/auto_examples_python.zip and b/_downloads/07fcc19ba03226cd3d83d4e40ec44385/auto_examples_python.zip differ
diff --git a/_downloads/6f1e7a639e0699d6164445b55e6c116d/auto_examples_jupyter.zip b/_downloads/6f1e7a639e0699d6164445b55e6c116d/auto_examples_jupyter.zip
index 9c1de297..a63175bf 100644
Binary files a/_downloads/6f1e7a639e0699d6164445b55e6c116d/auto_examples_jupyter.zip and b/_downloads/6f1e7a639e0699d6164445b55e6c116d/auto_examples_jupyter.zip differ
diff --git a/_sources/auto_examples/load_and_explore_poses.rst.txt b/_sources/auto_examples/load_and_explore_poses.rst.txt
index 2d1b7309..1d948b3f 100644
--- a/_sources/auto_examples/load_and_explore_poses.rst.txt
+++ b/_sources/auto_examples/load_and_explore_poses.rst.txt
@@ -102,7 +102,7 @@ e.g., ``file_path = "/path/to/my/data.h5"``)
 
  .. code-block:: none
 
-
    0.00B [00:00, ?B/s]
    39.9kB [00:00, 236kB/s]
    0.00B [00:00, ?B/s]    
    0.00B [00:00, ?B/s]
+
    0.00B [00:00, ?B/s]
    16.4kB [00:00, 108kB/s]
    0.00B [00:00, ?B/s]    
    0.00B [00:00, ?B/s]
 
 
 
@@ -226,7 +226,7 @@ using ``xarray``'s built-in plotting methods:
  .. code-block:: none
 
 
-    <xarray.plot.facetgrid.FacetGrid object at 0x7fd9cb42a8d0>
+    <xarray.plot.facetgrid.FacetGrid object at 0x7f5275a23310>
 
 
 
@@ -257,7 +257,7 @@ for all individuals:
  .. code-block:: none
 
 
-    <xarray.plot.facetgrid.FacetGrid object at 0x7fd9c6f2ae90>
+    <xarray.plot.facetgrid.FacetGrid object at 0x7f527479bdd0>
 
 
 
@@ -301,14 +301,14 @@ For example, we can use ``matplotlib`` to plot trajectories
  .. code-block:: none
 
 
-    <matplotlib.colorbar.Colorbar object at 0x7fd9c38fd1d0>
+    <matplotlib.colorbar.Colorbar object at 0x7f5272384650>
 
 
 
 
 .. rst-class:: sphx-glr-timing
 
-   **Total running time of the script:** (0 minutes 2.904 seconds)
+   **Total running time of the script:** (0 minutes 2.845 seconds)
 
 
 .. _sphx_glr_download_auto_examples_load_and_explore_poses.py:
diff --git a/_sources/auto_examples/sg_execution_times.rst.txt b/_sources/auto_examples/sg_execution_times.rst.txt
index faef24bf..79357baa 100644
--- a/_sources/auto_examples/sg_execution_times.rst.txt
+++ b/_sources/auto_examples/sg_execution_times.rst.txt
@@ -6,8 +6,8 @@
 
 Computation times
 =================
-**00:02.904** total execution time for **auto_examples** files:
+**00:02.845** total execution time for **auto_examples** files:
 
 +-----------------------------------------------------------------------------------------+-----------+--------+
-| :ref:`sphx_glr_auto_examples_load_and_explore_poses.py` (``load_and_explore_poses.py``) | 00:02.904 | 0.0 MB |
+| :ref:`sphx_glr_auto_examples_load_and_explore_poses.py` (``load_and_explore_poses.py``) | 00:02.845 | 0.0 MB |
 +-----------------------------------------------------------------------------------------+-----------+--------+
diff --git a/auto_examples/load_and_explore_poses.html b/auto_examples/load_and_explore_poses.html
index 69afb188..585c0e74 100644
--- a/auto_examples/load_and_explore_poses.html
+++ b/auto_examples/load_and_explore_poses.html
@@ -440,7 +440,7 @@ <h2>Fetch an example dataset<a class="headerlink" href="#fetch-an-example-datase
 </pre></div>
 </div>
 <div class="sphx-glr-script-out highlight-none notranslate"><div class="highlight"><pre><span></span>0.00B [00:00, ?B/s]
-39.9kB [00:00, 236kB/s]
+16.4kB [00:00, 108kB/s]
 0.00B [00:00, ?B/s]
 0.00B [00:00, ?B/s]
 </pre></div>
@@ -499,7 +499,7 @@ <h2>Select and plot data with xarray<a class="headerlink" href="#select-and-plot
 <div class="highlight-default notranslate"><div class="highlight"><pre><span></span><span class="n">da</span><span class="o">.</span><span class="n">plot</span><span class="o">.</span><span class="n">line</span><span class="p">(</span><span class="n">x</span><span class="o">=</span><span class="s2">&quot;time&quot;</span><span class="p">,</span> <span class="n">row</span><span class="o">=</span><span class="s2">&quot;space&quot;</span><span class="p">,</span> <span class="n">aspect</span><span class="o">=</span><span class="mi">2</span><span class="p">,</span> <span class="n">size</span><span class="o">=</span><span class="mf">2.5</span><span class="p">)</span>
 </pre></div>
 </div>
-<img src="../_images/sphx_glr_load_and_explore_poses_001.png" srcset="../_images/sphx_glr_load_and_explore_poses_001.png" alt="space = x, space = y" class = "sphx-glr-single-img"/><div class="sphx-glr-script-out highlight-none notranslate"><div class="highlight"><pre><span></span>&lt;xarray.plot.facetgrid.FacetGrid object at 0x7fd9cb42a8d0&gt;
+<img src="../_images/sphx_glr_load_and_explore_poses_001.png" srcset="../_images/sphx_glr_load_and_explore_poses_001.png" alt="space = x, space = y" class = "sphx-glr-single-img"/><div class="sphx-glr-script-out highlight-none notranslate"><div class="highlight"><pre><span></span>&lt;xarray.plot.facetgrid.FacetGrid object at 0x7f5275a23310&gt;
 </pre></div>
 </div>
 <p>Similarly we could plot the same keypoint’s x, y coordinates
@@ -508,7 +508,7 @@ <h2>Select and plot data with xarray<a class="headerlink" href="#select-and-plot
 <span class="n">da</span><span class="o">.</span><span class="n">plot</span><span class="o">.</span><span class="n">line</span><span class="p">(</span><span class="n">x</span><span class="o">=</span><span class="s2">&quot;time&quot;</span><span class="p">,</span> <span class="n">row</span><span class="o">=</span><span class="s2">&quot;individuals&quot;</span><span class="p">,</span> <span class="n">aspect</span><span class="o">=</span><span class="mi">2</span><span class="p">,</span> <span class="n">size</span><span class="o">=</span><span class="mf">2.5</span><span class="p">)</span>
 </pre></div>
 </div>
-<img src="../_images/sphx_glr_load_and_explore_poses_002.png" srcset="../_images/sphx_glr_load_and_explore_poses_002.png" alt="individuals = AEON3B_NTP, individuals = AEON3B_TP1, individuals = AEON3B_TP2" class = "sphx-glr-single-img"/><div class="sphx-glr-script-out highlight-none notranslate"><div class="highlight"><pre><span></span>&lt;xarray.plot.facetgrid.FacetGrid object at 0x7fd9c6f2ae90&gt;
+<img src="../_images/sphx_glr_load_and_explore_poses_002.png" srcset="../_images/sphx_glr_load_and_explore_poses_002.png" alt="individuals = AEON3B_NTP, individuals = AEON3B_TP1, individuals = AEON3B_TP2" class = "sphx-glr-single-img"/><div class="sphx-glr-script-out highlight-none notranslate"><div class="highlight"><pre><span></span>&lt;xarray.plot.facetgrid.FacetGrid object at 0x7f527479bdd0&gt;
 </pre></div>
 </div>
 </section>
@@ -532,10 +532,10 @@ <h2>Trajectory plots<a class="headerlink" href="#trajectory-plots" title="Permal
 <span class="n">plt</span><span class="o">.</span><span class="n">colorbar</span><span class="p">(</span><span class="n">label</span><span class="o">=</span><span class="s2">&quot;time (sec)&quot;</span><span class="p">)</span>
 </pre></div>
 </div>
-<img src="../_images/sphx_glr_load_and_explore_poses_003.png" srcset="../_images/sphx_glr_load_and_explore_poses_003.png" alt="Trajectory of AEON3B_TP1" class = "sphx-glr-single-img"/><div class="sphx-glr-script-out highlight-none notranslate"><div class="highlight"><pre><span></span>&lt;matplotlib.colorbar.Colorbar object at 0x7fd9c38fd1d0&gt;
+<img src="../_images/sphx_glr_load_and_explore_poses_003.png" srcset="../_images/sphx_glr_load_and_explore_poses_003.png" alt="Trajectory of AEON3B_TP1" class = "sphx-glr-single-img"/><div class="sphx-glr-script-out highlight-none notranslate"><div class="highlight"><pre><span></span>&lt;matplotlib.colorbar.Colorbar object at 0x7f5272384650&gt;
 </pre></div>
 </div>
-<p class="sphx-glr-timing"><strong>Total running time of the script:</strong> (0 minutes 2.904 seconds)</p>
+<p class="sphx-glr-timing"><strong>Total running time of the script:</strong> (0 minutes 2.845 seconds)</p>
 <div class="sphx-glr-footer sphx-glr-footer-example docutils container" id="sphx-glr-download-auto-examples-load-and-explore-poses-py">
 <div class="sphx-glr-download sphx-glr-download-python docutils container">
 <p><a class="reference download internal" download="" href="../_downloads/98a74f70c3a8280d37188d5370248393/load_and_explore_poses.py"><code class="xref download docutils literal notranslate"><span class="pre">Download</span> <span class="pre">Python</span> <span class="pre">source</span> <span class="pre">code:</span> <span class="pre">load_and_explore_poses.py</span></code></a></p>
diff --git a/auto_examples/sg_execution_times.html b/auto_examples/sg_execution_times.html
index aa6b61a9..0a9ab3a1 100644
--- a/auto_examples/sg_execution_times.html
+++ b/auto_examples/sg_execution_times.html
@@ -381,11 +381,11 @@
                   
   <section id="computation-times">
 <span id="sphx-glr-auto-examples-sg-execution-times"></span><h1>Computation times<a class="headerlink" href="#computation-times" title="Permalink to this heading">#</a></h1>
-<p><strong>00:02.904</strong> total execution time for <strong>auto_examples</strong> files:</p>
+<p><strong>00:02.845</strong> total execution time for <strong>auto_examples</strong> files:</p>
 <table class="table">
 <tbody>
 <tr class="row-odd"><td><p><a class="reference internal" href="load_and_explore_poses.html#sphx-glr-auto-examples-load-and-explore-poses-py"><span class="std std-ref">Load and explore pose tracks</span></a> (<code class="docutils literal notranslate"><span class="pre">load_and_explore_poses.py</span></code>)</p></td>
-<td><p>00:02.904</p></td>
+<td><p>00:02.845</p></td>
 <td><p>0.0 MB</p></td>
 </tr>
 </tbody>
diff --git a/searchindex.js b/searchindex.js
index 278c5f67..b21af34d 100644
--- a/searchindex.js
+++ b/searchindex.js
@@ -1 +1 @@
-Search.setIndex({"docnames": ["api_index", "auto_api/movement.datasets.fetch_pose_data_path", "auto_api/movement.datasets.list_pose_data", "auto_api/movement.io.load_poses.from_dlc_df", "auto_api/movement.io.load_poses.from_dlc_file", "auto_api/movement.io.load_poses.from_sleap_file", "auto_api/movement.io.save_poses.to_dlc_df", "auto_api/movement.io.save_poses.to_dlc_file", "auto_api/movement.io.validators.ValidFile", "auto_api/movement.io.validators.ValidHDF5", "auto_api/movement.io.validators.ValidPoseTracks", "auto_api/movement.io.validators.ValidPosesCSV", "auto_api/movement.logging.configure_logging", "auto_api/movement.logging.log_error", "auto_api/movement.logging.log_warning", "auto_examples/index", "auto_examples/load_and_explore_poses", "auto_examples/sg_execution_times", "contributing", "getting_started", "index"], "filenames": ["api_index.rst", "auto_api/movement.datasets.fetch_pose_data_path.rst", "auto_api/movement.datasets.list_pose_data.rst", "auto_api/movement.io.load_poses.from_dlc_df.rst", "auto_api/movement.io.load_poses.from_dlc_file.rst", "auto_api/movement.io.load_poses.from_sleap_file.rst", "auto_api/movement.io.save_poses.to_dlc_df.rst", "auto_api/movement.io.save_poses.to_dlc_file.rst", "auto_api/movement.io.validators.ValidFile.rst", "auto_api/movement.io.validators.ValidHDF5.rst", "auto_api/movement.io.validators.ValidPoseTracks.rst", "auto_api/movement.io.validators.ValidPosesCSV.rst", "auto_api/movement.logging.configure_logging.rst", "auto_api/movement.logging.log_error.rst", "auto_api/movement.logging.log_warning.rst", "auto_examples/index.rst", "auto_examples/load_and_explore_poses.rst", "auto_examples/sg_execution_times.rst", "contributing.rst", "getting_started.md", "index.md"], "titles": ["API Reference", "movement.datasets.fetch_pose_data_path", "movement.datasets.list_pose_data", "movement.io.load_poses.from_dlc_df", "movement.io.load_poses.from_dlc_file", "movement.io.load_poses.from_sleap_file", "movement.io.save_poses.to_dlc_df", "movement.io.save_poses.to_dlc_file", "movement.io.validators.ValidFile", "movement.io.validators.ValidHDF5", "movement.io.validators.ValidPoseTracks", "movement.io.validators.ValidPosesCSV", "movement.logging.configure_logging", "movement.logging.log_error", "movement.logging.log_warning", "Examples", "Load and explore pose tracks", "Computation times", "How to Contribute", "Getting Started", "movement"], "terms": {"filenam": [1, 2, 18], "sourc": [1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 18], "fetch": [1, 19], "sampl": [1, 2, 19], "pose": [1, 2, 3, 4, 5, 6, 7, 10, 11, 15, 17, 18, 19, 20], "data": [1, 2, 4, 5, 10, 20], "from": [1, 3, 4, 5, 10, 16, 18, 19, 20], "repositori": [1, 2, 18, 19], "The": [1, 3, 4, 5, 6, 7, 12, 13, 14, 16, 18, 19, 20], "ar": [1, 5, 16, 18, 19], "download": [1, 15, 16, 18, 19], "user": [1, 5, 19], "": [1, 8, 16, 18], "local": [1, 19], "machin": [1, 18, 19], "first": [1, 5, 16, 18, 19], "time": [1, 3, 4, 5, 16, 18, 19], "thei": [1, 6, 18, 19], "us": [1, 5, 12, 13, 14, 15, 16, 18, 19, 20], "store": [1, 6, 12, 18, 19], "cach": [1, 18], "directori": [1, 8, 12, 19], "function": [1, 12, 18, 19, 20], "return": [1, 2, 3, 4, 5, 6, 7, 13, 18, 19], "path": [1, 4, 5, 7, 8, 9, 11, 12, 16, 18, 19], "file": [1, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 17, 18, 19], "content": 1, "itself": 1, "paramet": [1, 3, 4, 5, 6, 7, 8, 9, 11, 12, 13, 14], "str": [1, 2, 4, 5, 7, 8, 9, 10, 12, 13, 14, 19], "name": [1, 9, 10, 12, 13, 14, 18, 19], "type": [1, 2, 3, 4, 5, 6, 7, 10, 13, 18, 19], "pathlib": [1, 4, 5, 7, 8, 9, 11, 12], "find": 2, "avail": [2, 16, 18, 19], "list": [2, 8, 9, 10, 16, 18, 19], "df": [3, 19], "fp": [3, 4, 5, 10, 16, 19], "none": [3, 4, 5, 7, 9, 10], "creat": [3, 19], "an": [3, 4, 5, 6, 7, 8, 9, 10, 13, 18, 19, 20], "xarrai": [3, 4, 5, 6, 7, 10, 19], "dataset": [3, 4, 5, 6, 7, 9, 18], "deeplabcut": [3, 4, 6, 7, 11, 19, 20], "style": [3, 6, 7, 18, 19], "panda": [3, 6, 7, 19], "datafram": [3, 4, 6, 7, 19], "contain": [3, 4, 5, 6, 7, 9, 10, 11, 16, 18, 19], "track": [3, 4, 5, 6, 7, 10, 15, 17, 19, 20], "confid": [3, 4, 5, 6, 7, 10, 16, 19], "score": [3, 4, 5, 6, 7, 10], "must": [3, 7], "format": [3, 4, 5, 9, 11, 19], "output": [3, 4, 11, 18, 19], "see": [3, 5, 18, 19], "note": [3, 5, 6], "float": [3, 4, 5, 10], "option": [3, 4, 5, 10, 12, 13, 14, 18], "number": [3, 4, 5, 18, 19], "frame": [3, 4, 5, 10, 19], "per": [3, 4, 5, 10, 19], "second": [3, 4, 5, 10, 16, 19], "video": [3, 4, 5, 10, 19], "If": [3, 4, 5, 8, 9, 10, 11, 18, 19], "default": [3, 4, 5, 8, 9, 10, 12, 13, 14, 18, 19], "coordin": [3, 4, 5, 16, 19], "metadata": [3, 4, 5, 6, 7, 19], "have": [3, 6, 8, 18, 19, 20], "multi": [3, 6, 7], "index": [3, 6, 7, 11, 16, 18, 20], "column": [3, 6, 7, 11], "follow": [3, 5, 6, 18, 19, 20], "level": [3, 6, 11, 12, 18], "scorer": [3, 6], "individu": [3, 5, 6, 10, 16, 18, 19], "bodypart": [3, 6], "coord": [3, 6], "mai": [3, 18, 19], "omit": 3, "i": [3, 5, 6, 8, 9, 15, 18, 19, 20], "onli": [3, 5, 6, 16, 18, 19], "one": [3, 5, 6, 8, 19], "spatial": [3, 19], "x": [3, 16, 18, 19], "y": [3, 16, 18, 19], "well": 3, "likelihood": [3, 6], "point": [3, 6, 8, 10], "wise": [3, 6, 10], "row": [3, 11, 16], "correspond": [3, 18, 19], "from_dlc_fil": [3, 19], "load": [3, 4, 5, 15, 17, 20], "directli": [3, 5, 6, 19], "file_path": [4, 5, 7, 16, 19], "dlc": [4, 7, 18, 19], "predict": [4, 5, 16, 19], "either": [4, 5, 7, 18, 19], "h5": [4, 5, 6, 7, 16, 19], "csv": [4, 6, 7, 11, 16, 19], "from_dlc_df": [4, 19], "exampl": [4, 5, 12, 19, 20], "import": [4, 5, 10, 18, 19], "d": [4, 5, 6, 7, 16, 19], "30": [4, 5, 19], "sleap": [5, 16, 18, 19, 20], "analysi": [5, 16, 19, 20], "altern": [5, 18], "slp": [5, 16], "label": [5, 16, 19], "can": [5, 12, 16, 18, 19], "also": [5, 18, 19], "suppli": 5, "thi": [5, 8, 9, 12, 16, 18, 19, 20], "featur": [5, 18], "experiment": [5, 18], "normal": 5, "save": [5, 6, 7], "e": [5, 8, 16, 18, 19, 20], "g": [5, 16, 18, 19, 20], "v1": [5, 18], "suffix": [5, 8], "export": 5, "command": [5, 18, 19], "line": [5, 16], "tool": 5, "convert": [5, 6, 7, 10, 19], "enabl": 5, "gui": 5, "choos": 5, "hdf5": [5, 9, 18], "menu": 5, "1": [5, 16, 18], "prefer": [5, 18, 19], "you": [5, 16, 18, 19, 20], "try": [5, 18, 19, 20], "doesnot": 5, "work": [5, 18], "all": [5, 15, 16, 18, 19, 20], "case": [5, 18, 20], "both": [5, 8], "instanc": 5, "ones": 5, "multipl": 5, "expect": [5, 6, 8, 9, 11, 19], "assign": [5, 19], "proofread": 5, "befor": [5, 18], "them": [5, 18, 19], "mean": 5, "each": [5, 18, 19], "interpret": 5, "singl": [5, 16], "anim": [5, 20], "guid": [5, 19], "2": [5, 16, 18, 19], "refer": [5, 6, 20], "http": 5, "ai": 5, "tutori": [5, 18], "html": [5, 18], "even": 6, "present": [6, 18], "regardless": 6, "proven": 6, "to_dlc_fil": [6, 19], "extens": 7, "recommend": [7, 18, 19], "to_dlc_df": [7, 19], "class": [8, 9, 10, 11, 18, 20], "expected_permiss": 8, "r": [8, 18], "expected_suffix": 8, "_noth": [8, 9], "noth": [8, 9], "w": 8, "rw": 8, "access": [8, 19], "permiss": 8, "readabl": 8, "writabl": 8, "empti": [8, 9], "check": [8, 9, 18, 19], "skip": [8, 9, 18], "rais": [8, 9, 11], "isadirectoryerror": 8, "permissionerror": 8, "doe": [8, 9, 11, 18], "filenotfounderror": 8, "exist": 8, "when": [8, 18], "fileexistserror": 8, "valueerror": [8, 9, 11], "__init__": [8, 9, 10, 11], "method": [8, 9, 10, 11, 16, 18, 19, 20], "gener": [8, 9, 10, 11, 15, 16, 18], "attr": [8, 9, 10, 11, 19], "attribut": [8, 9, 10, 11, 16, 19], "expected_dataset": 9, "tracks_arrai": 10, "scores_arrai": 10, "individual_nam": 10, "keypoint_nam": 10, "arrai": 10, "shape": [10, 19], "n_frame": 10, "n_individu": 10, "n_keypoint": 10, "n_space": 10, "It": [10, 18, 20], "dataarrai": [10, 16, 19], "object": [10, 16, 18, 19], "pose_track": [10, 16, 19], "np": 10, "ndarrai": [10, 19], "set": [10, 12, 18], "nan": [10, 16], "uniqu": [10, 19], "individual_0": 10, "individual_1": 10, "etc": [10, 18, 20], "keypoint": [10, 16, 19], "skeleton": [10, 19], "keypoint_0": 10, "keypoint_1": 10, "estim": [11, 18, 19, 20], "among": 11, "its": [11, 19], "top": 11, "log_level": 12, "10": [12, 18, 19], "logger_nam": [12, 13, 14], "log_directori": 12, "posixpath": 12, "home": [12, 16], "runner": [12, 16], "configur": [12, 18], "modul": [12, 18, 19], "up": [12, 18], "circular": 12, "rotat": 12, "handler": 12, "int": 12, "info": 12, "logger": [12, 13, 14], "A": [12, 18], "differ": 12, "specifi": [12, 18], "test": [12, 20], "purpos": 12, "error": 13, "messag": [13, 14, 18], "except": 13, "wa": 13, "pass": [13, 18], "warn": 14, "below": [15, 18], "galleri": [15, 16, 18], "movement": [15, 16, 18], "explor": [15, 17, 19], "python": [15, 16, 18, 19], "code": [15, 16], "auto_examples_python": 15, "zip": 15, "jupyt": [15, 16, 19], "notebook": [15, 16, 19], "auto_examples_jupyt": 15, "sphinx": [15, 16, 18], "go": 16, "end": 16, "full": 16, "matplotlib": 16, "pyplot": 16, "plt": 16, "io": [16, 18, 19], "load_pos": [16, 19], "print": [16, 19], "file_nam": [16, 19], "list_pose_data": [16, 18, 19], "dlc_singl": 16, "wasp": 16, "mouse_epm": 16, "dlc_two": [16, 19], "mice": [16, 19], "sleap_singl": 16, "sleap_two": 16, "mice_soci": 16, "interact": [16, 19], "sleap_thre": 16, "mice_aeon_proofread": 16, "feel": 16, "free": 16, "replac": 16, "your": [16, 18, 19], "own": 16, "my": [16, 18], "fetch_pose_data_path": [16, 18, 19], "0": [16, 17, 18, 19], "00b": 16, "00": [16, 17], "b": 16, "39": 16, "9kb": 16, "236kb": 16, "from_sleap_fil": [16, 19], "50": 16, "dimens": [16, 19], "601": 16, "3": [16, 18, 19], "space": [16, 19], "float64": 16, "02": [16, 17], "04": 16, "06": 16, "11": 16, "94": 16, "96": 16, "98": 16, "12": 16, "u10": 16, "aeon3b_ntp": 16, "aeon3b_tp1": 16, "aeon3b_tp2": 16, "u8": 16, "centroid": 16, "u1": 16, "variabl": [16, 18, 19, 20], "770": 16, "755": 16, "time_unit": [16, 19], "source_softwar": [16, 19], "source_fil": [16, 19], "mice_aeon": 16, "two": [16, 19], "To": [16, 18, 19], "get": [16, 18, 20], "sel": [16, 19], "For": [16, 18], "we": [16, 18, 19], "da": 16, "062e": 16, "03": 16, "773": 16, "618": 16, "6": [16, 18], "194": 16, "4": 16, "616": 16, "could": 16, "over": 16, "built": [16, 18, 19], "aspect": 16, "size": 16, "5": 16, "facetgrid": 16, "0x7fd9cb42a8d0": 16, "similarli": 16, "same": [16, 18, 19], "0x7fd9c6f2ae90": 16, "limit": 16, "scatter": 16, "mouse_nam": 16, "c": [16, 18, 19], "cmap": 16, "viridi": 16, "titl": [16, 18], "f": 16, "xlabel": 16, "ylabel": 16, "colorbar": 16, "sec": 16, "0x7fd9c38fd1d0": 16, "total": [16, 17], "run": [16, 18, 19], "script": 16, "minut": 16, "904": [16, 17], "load_and_explore_pos": [16, 17], "py": [16, 17, 18], "ipynb": 16, "execut": 17, "auto_exampl": 17, "mb": 17, "contributor": 18, "absolut": 18, "encourag": 18, "whether": 18, "fix": 18, "bug": 18, "improv": 18, "re": 18, "unsur": 18, "about": [18, 19], "ani": [18, 19], "part": 18, "process": 18, "pleas": [18, 19], "touch": 18, "best": 18, "reach": 18, "out": [18, 19, 20], "public": 18, "open": [18, 20], "issu": [18, 20], "so": 18, "other": [18, 19], "benefit": 18, "discuss": 18, "conda": [18, 19], "mamba": [18, 19], "In": [18, 19], "assum": [18, 19], "instal": [18, 20], "micromamba": [18, 19], "activ": [18, 19], "some": [18, 19], "requisit": 18, "n": [18, 19], "dev": [18, 19], "forg": [18, 19], "pytabl": [18, 19], "abov": [18, 19], "ensur": 18, "packag": [18, 19, 20], "often": 18, "t": 18, "via": 18, "pip": [18, 19], "includ": [18, 19], "clone": [18, 19], "github": [18, 19], "insid": [18, 19], "most": [18, 19], "shell": [18, 19], "zsh": [18, 19], "maco": [18, 19], "mode": [18, 19], "depend": [18, 19], "requir": 18, "final": 18, "initialis": 18, "submit": 18, "main": 18, "pr": 18, "adher": 18, "convent": 18, "draft": 18, "earli": [18, 20], "possibl": 18, "allow": 18, "should": 18, "descript": 18, "add": 18, "do": 18, "provid": [18, 19], "context": 18, "motiv": 18, "chang": [18, 20], "One": 18, "approv": 18, "repo": 18, "owner": 18, "enough": 18, "merg": 18, "unless": 18, "someon": 18, "comment": 18, "immedi": 18, "review": 18, "ask": 18, "specif": [18, 19], "think": [18, 19], "would": 18, "particularli": 18, "suit": 18, "squash": 18, "keep": 18, "clean": [18, 20], "histori": 18, "branch": 18, "typic": 18, "workflow": 18, "make": 18, "stage": 18, "trigger": 18, "made": 18, "manual": 18, "sure": 18, "write": 18, "don": 18, "forget": 18, "necessari": 18, "push": 18, "meaning": 18, "thorough": 18, "lint": 18, "successfulli": 18, "mark": 18, "readi": 18, "respond": 18, "implement": 18, "success": 18, "consist": 18, "current": [18, 19, 20], "ruff": 18, "job": 18, "enforc": 18, "pep8": 18, "sort": 18, "black": 18, "auto": 18, "mypi": 18, "static": 18, "checker": 18, "manifest": 18, "right": 18, "These": 18, "prevent": 18, "being": 18, "fail": 18, "root": 18, "p": 18, "docstr": 18, "numpydoc": 18, "pytest": 18, "aim": 18, "100": [18, 19], "coverag": 18, "far": 18, "reason": 18, "folder": 18, "need": [18, 20], "real": 18, "especi": 18, "larg": 18, "sever": 18, "extern": 18, "more": [18, 19], "inform": [18, 19], "action": 18, "usual": 18, "deploy": 18, "test_and_deploi": 18, "yml": 18, "ha": [18, 19], "been": 18, "pypi": [18, 19], "git": 18, "tag": 18, "semant": 18, "which": [18, 19], "major": 18, "minor": 18, "patch": 18, "small": 18, "bugfix": 18, "break": 18, "setuptools_scm": 18, "automat": 18, "pyproject": 18, "toml": 18, "infer": 18, "wish": 18, "bump": 18, "m": 18, "web": 18, "interfac": [18, 20], "addit": 18, "determin": 18, "latest": [18, 19], "host": 18, "page": 18, "neuroinformat": 18, "unit": [18, 19], "Its": 18, "locat": 18, "doc": 18, "written": 18, "restructuredtext": 18, "markdown": 18, "md": 18, "homepag": 18, "websit": 18, "rst": 18, "link": 18, "toctre": 18, "direct": 18, "pydata": 18, "theme": 18, "handl": 18, "docs_build_and_deploi": 18, "broken": 18, "whenev": 18, "publish": 18, "sync": 18, "now": 18, "header": 18, "increment": 18, "h1": 18, "h2": 18, "h3": 18, "without": 18, "my_new_fil": 18, "maxdepth": 18, "hidden": 18, "existing_fil": 18, "introduc": 18, "face": 18, "api_index": 18, "currentmodul": 18, "new_modul": 18, "autosummari": 18, "auto_api": 18, "new_funct": 18, "newclass": 18, "structur": 18, "relev": [18, 19], "view": [18, 19], "txt": 18, "Then": [18, 19], "browser": 18, "refresh": 18, "after": 18, "remov": 18, "rm": 18, "rf": 18, "maintain": 18, "our": 18, "platform": 18, "choic": 18, "call": [18, 19], "gin": 18, "german": 18, "node": 18, "like": [18, 19], "cli": 18, "start": [18, 20], "softwar": [18, 19, 20], "pooch": 18, "url": 18, "subsequ": [18, 19], "nice": 18, "util": 18, "verif": 18, "sha256": 18, "hash": 18, "decompress": 18, "archiv": 18, "pose_data": 18, "manag": 18, "known": 18, "alreadi": [18, 19], "By": 18, "data_dir": 18, "core": 18, "account": 18, "collabor": 18, "credenti": 18, "login": 18, "termin": 18, "upload": 18, "synchronis": 18, "bidirection": 18, "checksum": 18, "sha256sum": 18, "file_hash": 18, "text": 18, "given": 18, "make_registri": 18, "sha256_registri": 18, "registri": 18, "correct": 18, "previou": 18, "step": 18, "perform": [18, 20], "avoid": 18, "environ": 19, "whatev": 19, "ve": 19, "env": 19, "next": 19, "releas": 19, "older": 19, "version": 19, "updat": 19, "upgrad": 19, "develop": [19, 20], "edit": 19, "contribut": 19, "pd": 19, "read_hdf": 19, "prefix": 19, "On": 19, "simpli": 19, "feed": 19, "shown": 19, "repres": 19, "represent": 19, "cell": 19, "appropri": 19, "z": 19, "otherwis": 19, "numpi": 19, "learn": 19, "document": 19, "were": 19, "subset": 19, "ds_sel": 19, "slice": 19, "individual1": 19, "individual2": 19, "snout": 19, "combin": 19, "appli": 19, "result": [19, 20], "rather": 19, "than": 19, "power": 19, "visualis": [19, 20], "inspir": [19, 20], "disk": 19, "varieti": 19, "support": 19, "save_pos": 19, "instead": 19, "to_hdf": 19, "to_csv": 19, "kinemat": 20, "bodi": 20, "neurosci": 20, "ethologi": 20, "research": 20, "api": 20, "stai": 20, "tune": 20, "suffici": 20, "scientif": 20, "subject": 20, "suggest": 20, "evalu": 20, "qualiti": 20, "oper": 20, "calcul": 20, "speed": 20, "acceler": 20, "joint": 20, "angl": 20, "produc": 20, "report": 20, "cover": 20, "serv": 20, "dlc2kinemat": 20, "pyrat": 20, "kino": 20, "wazp": 20}, "objects": {"movement.datasets": [[1, 0, 1, "", "fetch_pose_data_path"], [2, 0, 1, "", "list_pose_data"]], "movement.io.load_poses": [[3, 0, 1, "", "from_dlc_df"], [4, 0, 1, "", "from_dlc_file"], [5, 0, 1, "", "from_sleap_file"]], "movement.io.save_poses": [[6, 0, 1, "", "to_dlc_df"], [7, 0, 1, "", "to_dlc_file"]], "movement.io.validators": [[8, 1, 1, "", "ValidFile"], [9, 1, 1, "", "ValidHDF5"], [10, 1, 1, "", "ValidPoseTracks"], [11, 1, 1, "", "ValidPosesCSV"]], "movement.io.validators.ValidFile": [[8, 2, 1, "", "__init__"]], "movement.io.validators.ValidHDF5": [[9, 2, 1, "", "__init__"]], "movement.io.validators.ValidPoseTracks": [[10, 2, 1, "", "__init__"], [10, 3, 1, "", "fps"], [10, 3, 1, "", "individual_names"], [10, 3, 1, "", "keypoint_names"], [10, 3, 1, "", "scores_array"], [10, 3, 1, "", "tracks_array"]], "movement.io.validators.ValidPosesCSV": [[11, 2, 1, "", "__init__"]], "movement.logging": [[12, 0, 1, "", "configure_logging"], [13, 0, 1, "", "log_error"], [14, 0, 1, "", "log_warning"]]}, "objtypes": {"0": "py:function", "1": "py:class", "2": "py:method", "3": "py:attribute"}, "objnames": {"0": ["py", "function", "Python function"], "1": ["py", "class", "Python class"], "2": ["py", "method", "Python method"], "3": ["py", "attribute", "Python attribute"]}, "titleterms": {"api": [0, 18], "refer": [0, 18], "input": 0, "output": 0, "dataset": [0, 1, 2, 16, 19], "log": [0, 12, 13, 14], "movement": [1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 19, 20], "fetch_pose_data_path": 1, "list_pose_data": 2, "io": [3, 4, 5, 6, 7, 8, 9, 10, 11], "load_pos": [3, 4, 5], "from_dlc_df": 3, "from_dlc_fil": 4, "from_sleap_fil": 5, "save_pos": [6, 7], "to_dlc_df": 6, "to_dlc_fil": 7, "valid": [8, 9, 10, 11], "validfil": 8, "validhdf5": 9, "validposetrack": 10, "validposescsv": 11, "configure_log": 12, "log_error": 13, "log_warn": 14, "exampl": [15, 16, 18], "load": [16, 19], "explor": 16, "pose": 16, "track": 16, "import": 16, "fetch": [16, 18], "an": 16, "select": [16, 19], "plot": [16, 19], "data": [16, 18, 19], "xarrai": 16, "trajectori": 16, "comput": 17, "time": 17, "how": 18, "contribut": 18, "code": 18, "creat": 18, "develop": 18, "environ": 18, "pull": 18, "request": 18, "guidelin": 18, "format": 18, "pre": 18, "commit": 18, "hook": 18, "test": 18, "continu": 18, "integr": 18, "version": 18, "releas": 18, "document": 18, "edit": 18, "updat": 18, "build": 18, "local": 18, "sampl": 18, "ad": 18, "new": 18, "get": 19, "start": 19, "instal": 19, "work": 19, "structur": 19, "index": 19, "save": 19, "statu": 20, "aim": 20, "relat": 20, "project": 20}, "envversion": {"sphinx.domains.c": 3, "sphinx.domains.changeset": 1, "sphinx.domains.citation": 1, "sphinx.domains.cpp": 9, "sphinx.domains.index": 1, "sphinx.domains.javascript": 3, "sphinx.domains.math": 2, "sphinx.domains.python": 4, "sphinx.domains.rst": 2, "sphinx.domains.std": 2, "sphinx.ext.viewcode": 1, "sphinx.ext.intersphinx": 1, "nbsphinx": 4, "sphinx": 58}, "alltitles": {"API Reference": [[0, "api-reference"]], "Input/Output": [[0, "input-output"]], "Datasets": [[0, "datasets"]], "Logging": [[0, "logging"]], "movement.datasets.fetch_pose_data_path": [[1, "movement-datasets-fetch-pose-data-path"]], "movement.datasets.list_pose_data": [[2, "movement-datasets-list-pose-data"]], "movement.io.load_poses.from_dlc_df": [[3, "movement-io-load-poses-from-dlc-df"]], "movement.io.load_poses.from_dlc_file": [[4, "movement-io-load-poses-from-dlc-file"]], "movement.io.load_poses.from_sleap_file": [[5, "movement-io-load-poses-from-sleap-file"]], "movement.io.save_poses.to_dlc_df": [[6, "movement-io-save-poses-to-dlc-df"]], "movement.io.save_poses.to_dlc_file": [[7, "movement-io-save-poses-to-dlc-file"]], "movement.io.validators.ValidFile": [[8, "movement-io-validators-validfile"]], "movement.io.validators.ValidHDF5": [[9, "movement-io-validators-validhdf5"]], "movement.io.validators.ValidPoseTracks": [[10, "movement-io-validators-validposetracks"]], "movement.io.validators.ValidPosesCSV": [[11, "movement-io-validators-validposescsv"]], "movement.logging.configure_logging": [[12, "movement-logging-configure-logging"]], "movement.logging.log_error": [[13, "movement-logging-log-error"]], "movement.logging.log_warning": [[14, "movement-logging-log-warning"]], "Examples": [[15, "examples"]], "Load and explore pose tracks": [[16, "load-and-explore-pose-tracks"]], "Imports": [[16, "imports"]], "Fetch an example dataset": [[16, "fetch-an-example-dataset"]], "Load the dataset": [[16, "load-the-dataset"]], "Select and plot data with xarray": [[16, "select-and-plot-data-with-xarray"]], "Trajectory plots": [[16, "trajectory-plots"]], "Computation times": [[17, "computation-times"]], "How to Contribute": [[18, "how-to-contribute"]], "Contributing code": [[18, "contributing-code"]], "Creating a development environment": [[18, "creating-a-development-environment"]], "Pull requests": [[18, "pull-requests"]], "Development guidelines": [[18, "development-guidelines"]], "Formatting and pre-commit hooks": [[18, "formatting-and-pre-commit-hooks"]], "Testing": [[18, "testing"]], "Continuous integration": [[18, "continuous-integration"]], "Versioning and releases": [[18, "versioning-and-releases"]], "Contributing documentation": [[18, "contributing-documentation"]], "Editing the documentation": [[18, "editing-the-documentation"]], "Updating the API reference": [[18, "updating-the-api-reference"]], "Updating the examples": [[18, "updating-the-examples"]], "Building the documentation locally": [[18, "building-the-documentation-locally"]], "Sample data": [[18, "sample-data"]], "Fetching data": [[18, "fetching-data"]], "Adding new data": [[18, "adding-new-data"]], "Getting Started": [[19, "getting-started"]], "Installation": [[19, "installation"]], "Loading data": [[19, "loading-data"]], "Working with movement datasets": [[19, "working-with-movement-datasets"]], "Dataset structure": [[19, "dataset-structure"]], "Indexing and selection": [[19, "indexing-and-selection"]], "Plotting": [[19, "plotting"]], "Saving data": [[19, "saving-data"]], "movement": [[20, "movement"]], "Status": [[20, "status"]], "Aims": [[20, "aims"]], "Related projects": [[20, "related-projects"]]}, "indexentries": {"fetch_pose_data_path() (in module movement.datasets)": [[1, "movement.datasets.fetch_pose_data_path"]], "list_pose_data() (in module movement.datasets)": [[2, "movement.datasets.list_pose_data"]], "from_dlc_df() (in module movement.io.load_poses)": [[3, "movement.io.load_poses.from_dlc_df"]], "from_dlc_file() (in module movement.io.load_poses)": [[4, "movement.io.load_poses.from_dlc_file"]], "from_sleap_file() (in module movement.io.load_poses)": [[5, "movement.io.load_poses.from_sleap_file"]], "to_dlc_df() (in module movement.io.save_poses)": [[6, "movement.io.save_poses.to_dlc_df"]], "to_dlc_file() (in module movement.io.save_poses)": [[7, "movement.io.save_poses.to_dlc_file"]], "validfile (class in movement.io.validators)": [[8, "movement.io.validators.ValidFile"]], "__init__() (movement.io.validators.validfile method)": [[8, "movement.io.validators.ValidFile.__init__"]], "validhdf5 (class in movement.io.validators)": [[9, "movement.io.validators.ValidHDF5"]], "__init__() (movement.io.validators.validhdf5 method)": [[9, "movement.io.validators.ValidHDF5.__init__"]], "validposetracks (class in movement.io.validators)": [[10, "movement.io.validators.ValidPoseTracks"]], "__init__() (movement.io.validators.validposetracks method)": [[10, "movement.io.validators.ValidPoseTracks.__init__"]], "fps (movement.io.validators.validposetracks attribute)": [[10, "movement.io.validators.ValidPoseTracks.fps"]], "individual_names (movement.io.validators.validposetracks attribute)": [[10, "movement.io.validators.ValidPoseTracks.individual_names"]], "keypoint_names (movement.io.validators.validposetracks attribute)": [[10, "movement.io.validators.ValidPoseTracks.keypoint_names"]], "scores_array (movement.io.validators.validposetracks attribute)": [[10, "movement.io.validators.ValidPoseTracks.scores_array"]], "tracks_array (movement.io.validators.validposetracks attribute)": [[10, "movement.io.validators.ValidPoseTracks.tracks_array"]], "validposescsv (class in movement.io.validators)": [[11, "movement.io.validators.ValidPosesCSV"]], "__init__() (movement.io.validators.validposescsv method)": [[11, "movement.io.validators.ValidPosesCSV.__init__"]], "configure_logging() (in module movement.logging)": [[12, "movement.logging.configure_logging"]], "log_error() (in module movement.logging)": [[13, "movement.logging.log_error"]], "log_warning() (in module movement.logging)": [[14, "movement.logging.log_warning"]]}})
\ No newline at end of file
+Search.setIndex({"docnames": ["api_index", "auto_api/movement.datasets.fetch_pose_data_path", "auto_api/movement.datasets.list_pose_data", "auto_api/movement.io.load_poses.from_dlc_df", "auto_api/movement.io.load_poses.from_dlc_file", "auto_api/movement.io.load_poses.from_sleap_file", "auto_api/movement.io.save_poses.to_dlc_df", "auto_api/movement.io.save_poses.to_dlc_file", "auto_api/movement.io.validators.ValidFile", "auto_api/movement.io.validators.ValidHDF5", "auto_api/movement.io.validators.ValidPoseTracks", "auto_api/movement.io.validators.ValidPosesCSV", "auto_api/movement.logging.configure_logging", "auto_api/movement.logging.log_error", "auto_api/movement.logging.log_warning", "auto_examples/index", "auto_examples/load_and_explore_poses", "auto_examples/sg_execution_times", "contributing", "getting_started", "index"], "filenames": ["api_index.rst", "auto_api/movement.datasets.fetch_pose_data_path.rst", "auto_api/movement.datasets.list_pose_data.rst", "auto_api/movement.io.load_poses.from_dlc_df.rst", "auto_api/movement.io.load_poses.from_dlc_file.rst", "auto_api/movement.io.load_poses.from_sleap_file.rst", "auto_api/movement.io.save_poses.to_dlc_df.rst", "auto_api/movement.io.save_poses.to_dlc_file.rst", "auto_api/movement.io.validators.ValidFile.rst", "auto_api/movement.io.validators.ValidHDF5.rst", "auto_api/movement.io.validators.ValidPoseTracks.rst", "auto_api/movement.io.validators.ValidPosesCSV.rst", "auto_api/movement.logging.configure_logging.rst", "auto_api/movement.logging.log_error.rst", "auto_api/movement.logging.log_warning.rst", "auto_examples/index.rst", "auto_examples/load_and_explore_poses.rst", "auto_examples/sg_execution_times.rst", "contributing.rst", "getting_started.md", "index.md"], "titles": ["API Reference", "movement.datasets.fetch_pose_data_path", "movement.datasets.list_pose_data", "movement.io.load_poses.from_dlc_df", "movement.io.load_poses.from_dlc_file", "movement.io.load_poses.from_sleap_file", "movement.io.save_poses.to_dlc_df", "movement.io.save_poses.to_dlc_file", "movement.io.validators.ValidFile", "movement.io.validators.ValidHDF5", "movement.io.validators.ValidPoseTracks", "movement.io.validators.ValidPosesCSV", "movement.logging.configure_logging", "movement.logging.log_error", "movement.logging.log_warning", "Examples", "Load and explore pose tracks", "Computation times", "How to Contribute", "Getting Started", "movement"], "terms": {"filenam": [1, 2, 18], "sourc": [1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 18], "fetch": [1, 19], "sampl": [1, 2, 19], "pose": [1, 2, 3, 4, 5, 6, 7, 10, 11, 15, 17, 18, 19, 20], "data": [1, 2, 4, 5, 10, 20], "from": [1, 3, 4, 5, 10, 16, 18, 19, 20], "repositori": [1, 2, 18, 19], "The": [1, 3, 4, 5, 6, 7, 12, 13, 14, 16, 18, 19, 20], "ar": [1, 5, 16, 18, 19], "download": [1, 15, 16, 18, 19], "user": [1, 5, 19], "": [1, 8, 16, 18], "local": [1, 19], "machin": [1, 18, 19], "first": [1, 5, 16, 18, 19], "time": [1, 3, 4, 5, 16, 18, 19], "thei": [1, 6, 18, 19], "us": [1, 5, 12, 13, 14, 15, 16, 18, 19, 20], "store": [1, 6, 12, 18, 19], "cach": [1, 18], "directori": [1, 8, 12, 19], "function": [1, 12, 18, 19, 20], "return": [1, 2, 3, 4, 5, 6, 7, 13, 18, 19], "path": [1, 4, 5, 7, 8, 9, 11, 12, 16, 18, 19], "file": [1, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 17, 18, 19], "content": 1, "itself": 1, "paramet": [1, 3, 4, 5, 6, 7, 8, 9, 11, 12, 13, 14], "str": [1, 2, 4, 5, 7, 8, 9, 10, 12, 13, 14, 19], "name": [1, 9, 10, 12, 13, 14, 18, 19], "type": [1, 2, 3, 4, 5, 6, 7, 10, 13, 18, 19], "pathlib": [1, 4, 5, 7, 8, 9, 11, 12], "find": 2, "avail": [2, 16, 18, 19], "list": [2, 8, 9, 10, 16, 18, 19], "df": [3, 19], "fp": [3, 4, 5, 10, 16, 19], "none": [3, 4, 5, 7, 9, 10], "creat": [3, 19], "an": [3, 4, 5, 6, 7, 8, 9, 10, 13, 18, 19, 20], "xarrai": [3, 4, 5, 6, 7, 10, 19], "dataset": [3, 4, 5, 6, 7, 9, 18], "deeplabcut": [3, 4, 6, 7, 11, 19, 20], "style": [3, 6, 7, 18, 19], "panda": [3, 6, 7, 19], "datafram": [3, 4, 6, 7, 19], "contain": [3, 4, 5, 6, 7, 9, 10, 11, 16, 18, 19], "track": [3, 4, 5, 6, 7, 10, 15, 17, 19, 20], "confid": [3, 4, 5, 6, 7, 10, 16, 19], "score": [3, 4, 5, 6, 7, 10], "must": [3, 7], "format": [3, 4, 5, 9, 11, 19], "output": [3, 4, 11, 18, 19], "see": [3, 5, 18, 19], "note": [3, 5, 6], "float": [3, 4, 5, 10], "option": [3, 4, 5, 10, 12, 13, 14, 18], "number": [3, 4, 5, 18, 19], "frame": [3, 4, 5, 10, 19], "per": [3, 4, 5, 10, 19], "second": [3, 4, 5, 10, 16, 19], "video": [3, 4, 5, 10, 19], "If": [3, 4, 5, 8, 9, 10, 11, 18, 19], "default": [3, 4, 5, 8, 9, 10, 12, 13, 14, 18, 19], "coordin": [3, 4, 5, 16, 19], "metadata": [3, 4, 5, 6, 7, 19], "have": [3, 6, 8, 18, 19, 20], "multi": [3, 6, 7], "index": [3, 6, 7, 11, 16, 18, 20], "column": [3, 6, 7, 11], "follow": [3, 5, 6, 18, 19, 20], "level": [3, 6, 11, 12, 18], "scorer": [3, 6], "individu": [3, 5, 6, 10, 16, 18, 19], "bodypart": [3, 6], "coord": [3, 6], "mai": [3, 18, 19], "omit": 3, "i": [3, 5, 6, 8, 9, 15, 18, 19, 20], "onli": [3, 5, 6, 16, 18, 19], "one": [3, 5, 6, 8, 19], "spatial": [3, 19], "x": [3, 16, 18, 19], "y": [3, 16, 18, 19], "well": 3, "likelihood": [3, 6], "point": [3, 6, 8, 10], "wise": [3, 6, 10], "row": [3, 11, 16], "correspond": [3, 18, 19], "from_dlc_fil": [3, 19], "load": [3, 4, 5, 15, 17, 20], "directli": [3, 5, 6, 19], "file_path": [4, 5, 7, 16, 19], "dlc": [4, 7, 18, 19], "predict": [4, 5, 16, 19], "either": [4, 5, 7, 18, 19], "h5": [4, 5, 6, 7, 16, 19], "csv": [4, 6, 7, 11, 16, 19], "from_dlc_df": [4, 19], "exampl": [4, 5, 12, 19, 20], "import": [4, 5, 10, 18, 19], "d": [4, 5, 6, 7, 16, 19], "30": [4, 5, 19], "sleap": [5, 16, 18, 19, 20], "analysi": [5, 16, 19, 20], "altern": [5, 18], "slp": [5, 16], "label": [5, 16, 19], "can": [5, 12, 16, 18, 19], "also": [5, 18, 19], "suppli": 5, "thi": [5, 8, 9, 12, 16, 18, 19, 20], "featur": [5, 18], "experiment": [5, 18], "normal": 5, "save": [5, 6, 7], "e": [5, 8, 16, 18, 19, 20], "g": [5, 16, 18, 19, 20], "v1": [5, 18], "suffix": [5, 8], "export": 5, "command": [5, 18, 19], "line": [5, 16], "tool": 5, "convert": [5, 6, 7, 10, 19], "enabl": 5, "gui": 5, "choos": 5, "hdf5": [5, 9, 18], "menu": 5, "1": [5, 16, 18], "prefer": [5, 18, 19], "you": [5, 16, 18, 19, 20], "try": [5, 18, 19, 20], "doesnot": 5, "work": [5, 18], "all": [5, 15, 16, 18, 19, 20], "case": [5, 18, 20], "both": [5, 8], "instanc": 5, "ones": 5, "multipl": 5, "expect": [5, 6, 8, 9, 11, 19], "assign": [5, 19], "proofread": 5, "befor": [5, 18], "them": [5, 18, 19], "mean": 5, "each": [5, 18, 19], "interpret": 5, "singl": [5, 16], "anim": [5, 20], "guid": [5, 19], "2": [5, 16, 18, 19], "refer": [5, 6, 20], "http": 5, "ai": 5, "tutori": [5, 18], "html": [5, 18], "even": 6, "present": [6, 18], "regardless": 6, "proven": 6, "to_dlc_fil": [6, 19], "extens": 7, "recommend": [7, 18, 19], "to_dlc_df": [7, 19], "class": [8, 9, 10, 11, 18, 20], "expected_permiss": 8, "r": [8, 18], "expected_suffix": 8, "_noth": [8, 9], "noth": [8, 9], "w": 8, "rw": 8, "access": [8, 19], "permiss": 8, "readabl": 8, "writabl": 8, "empti": [8, 9], "check": [8, 9, 18, 19], "skip": [8, 9, 18], "rais": [8, 9, 11], "isadirectoryerror": 8, "permissionerror": 8, "doe": [8, 9, 11, 18], "filenotfounderror": 8, "exist": 8, "when": [8, 18], "fileexistserror": 8, "valueerror": [8, 9, 11], "__init__": [8, 9, 10, 11], "method": [8, 9, 10, 11, 16, 18, 19, 20], "gener": [8, 9, 10, 11, 15, 16, 18], "attr": [8, 9, 10, 11, 19], "attribut": [8, 9, 10, 11, 16, 19], "expected_dataset": 9, "tracks_arrai": 10, "scores_arrai": 10, "individual_nam": 10, "keypoint_nam": 10, "arrai": 10, "shape": [10, 19], "n_frame": 10, "n_individu": 10, "n_keypoint": 10, "n_space": 10, "It": [10, 18, 20], "dataarrai": [10, 16, 19], "object": [10, 16, 18, 19], "pose_track": [10, 16, 19], "np": 10, "ndarrai": [10, 19], "set": [10, 12, 18], "nan": [10, 16], "uniqu": [10, 19], "individual_0": 10, "individual_1": 10, "etc": [10, 18, 20], "keypoint": [10, 16, 19], "skeleton": [10, 19], "keypoint_0": 10, "keypoint_1": 10, "estim": [11, 18, 19, 20], "among": 11, "its": [11, 19], "top": 11, "log_level": 12, "10": [12, 18, 19], "logger_nam": [12, 13, 14], "log_directori": 12, "posixpath": 12, "home": [12, 16], "runner": [12, 16], "configur": [12, 18], "modul": [12, 18, 19], "up": [12, 18], "circular": 12, "rotat": 12, "handler": 12, "int": 12, "info": 12, "logger": [12, 13, 14], "A": [12, 18], "differ": 12, "specifi": [12, 18], "test": [12, 20], "purpos": 12, "error": 13, "messag": [13, 14, 18], "except": 13, "wa": 13, "pass": [13, 18], "warn": 14, "below": [15, 18], "galleri": [15, 16, 18], "movement": [15, 16, 18], "explor": [15, 17, 19], "python": [15, 16, 18, 19], "code": [15, 16], "auto_examples_python": 15, "zip": 15, "jupyt": [15, 16, 19], "notebook": [15, 16, 19], "auto_examples_jupyt": 15, "sphinx": [15, 16, 18], "go": 16, "end": 16, "full": 16, "matplotlib": 16, "pyplot": 16, "plt": 16, "io": [16, 18, 19], "load_pos": [16, 19], "print": [16, 19], "file_nam": [16, 19], "list_pose_data": [16, 18, 19], "dlc_singl": 16, "wasp": 16, "mouse_epm": 16, "dlc_two": [16, 19], "mice": [16, 19], "sleap_singl": 16, "sleap_two": 16, "mice_soci": 16, "interact": [16, 19], "sleap_thre": 16, "mice_aeon_proofread": 16, "feel": 16, "free": 16, "replac": 16, "your": [16, 18, 19], "own": 16, "my": [16, 18], "fetch_pose_data_path": [16, 18, 19], "0": [16, 17, 18, 19], "00b": 16, "00": [16, 17], "b": 16, "16": 16, "4kb": 16, "108kb": 16, "from_sleap_fil": [16, 19], "50": 16, "dimens": [16, 19], "601": 16, "3": [16, 18, 19], "space": [16, 19], "float64": 16, "02": [16, 17], "04": 16, "06": 16, "11": 16, "94": 16, "96": 16, "98": 16, "12": 16, "u10": 16, "aeon3b_ntp": 16, "aeon3b_tp1": 16, "aeon3b_tp2": 16, "u8": 16, "centroid": 16, "u1": 16, "variabl": [16, 18, 19, 20], "770": 16, "755": 16, "time_unit": [16, 19], "source_softwar": [16, 19], "source_fil": [16, 19], "mice_aeon": 16, "two": [16, 19], "To": [16, 18, 19], "get": [16, 18, 20], "sel": [16, 19], "For": [16, 18], "we": [16, 18, 19], "da": 16, "062e": 16, "03": 16, "773": 16, "618": 16, "6": [16, 18], "194": 16, "4": 16, "616": 16, "could": 16, "over": 16, "built": [16, 18, 19], "aspect": 16, "size": 16, "5": 16, "facetgrid": 16, "0x7f5275a23310": 16, "similarli": 16, "same": [16, 18, 19], "0x7f527479bdd0": 16, "limit": 16, "scatter": 16, "mouse_nam": 16, "c": [16, 18, 19], "cmap": 16, "viridi": 16, "titl": [16, 18], "f": 16, "xlabel": 16, "ylabel": 16, "colorbar": 16, "sec": 16, "0x7f5272384650": 16, "total": [16, 17], "run": [16, 18, 19], "script": 16, "minut": 16, "845": [16, 17], "load_and_explore_pos": [16, 17], "py": [16, 17, 18], "ipynb": 16, "execut": 17, "auto_exampl": 17, "mb": 17, "contributor": 18, "absolut": 18, "encourag": 18, "whether": 18, "fix": 18, "bug": 18, "improv": 18, "re": 18, "unsur": 18, "about": [18, 19], "ani": [18, 19], "part": 18, "process": 18, "pleas": [18, 19], "touch": 18, "best": 18, "reach": 18, "out": [18, 19, 20], "public": 18, "open": [18, 20], "issu": [18, 20], "so": 18, "other": [18, 19], "benefit": 18, "discuss": 18, "conda": [18, 19], "mamba": [18, 19], "In": [18, 19], "assum": [18, 19], "instal": [18, 20], "micromamba": [18, 19], "activ": [18, 19], "some": [18, 19], "requisit": 18, "n": [18, 19], "dev": [18, 19], "forg": [18, 19], "pytabl": [18, 19], "abov": [18, 19], "ensur": 18, "packag": [18, 19, 20], "often": 18, "t": 18, "via": 18, "pip": [18, 19], "includ": [18, 19], "clone": [18, 19], "github": [18, 19], "insid": [18, 19], "most": [18, 19], "shell": [18, 19], "zsh": [18, 19], "maco": [18, 19], "mode": [18, 19], "depend": [18, 19], "requir": 18, "final": 18, "initialis": 18, "submit": 18, "main": 18, "pr": 18, "adher": 18, "convent": 18, "draft": 18, "earli": [18, 20], "possibl": 18, "allow": 18, "should": 18, "descript": 18, "add": 18, "do": 18, "provid": [18, 19], "context": 18, "motiv": 18, "chang": [18, 20], "One": 18, "approv": 18, "repo": 18, "owner": 18, "enough": 18, "merg": 18, "unless": 18, "someon": 18, "comment": 18, "immedi": 18, "review": 18, "ask": 18, "specif": [18, 19], "think": [18, 19], "would": 18, "particularli": 18, "suit": 18, "squash": 18, "keep": 18, "clean": [18, 20], "histori": 18, "branch": 18, "typic": 18, "workflow": 18, "make": 18, "stage": 18, "trigger": 18, "made": 18, "manual": 18, "sure": 18, "write": 18, "don": 18, "forget": 18, "necessari": 18, "push": 18, "meaning": 18, "thorough": 18, "lint": 18, "successfulli": 18, "mark": 18, "readi": 18, "respond": 18, "implement": 18, "success": 18, "consist": 18, "current": [18, 19, 20], "ruff": 18, "job": 18, "enforc": 18, "pep8": 18, "sort": 18, "black": 18, "auto": 18, "mypi": 18, "static": 18, "checker": 18, "manifest": 18, "right": 18, "These": 18, "prevent": 18, "being": 18, "fail": 18, "root": 18, "p": 18, "docstr": 18, "numpydoc": 18, "pytest": 18, "aim": 18, "100": [18, 19], "coverag": 18, "far": 18, "reason": 18, "folder": 18, "need": [18, 20], "real": 18, "especi": 18, "larg": 18, "sever": 18, "extern": 18, "more": [18, 19], "inform": [18, 19], "action": 18, "usual": 18, "deploy": 18, "test_and_deploi": 18, "yml": 18, "ha": [18, 19], "been": 18, "pypi": [18, 19], "git": 18, "tag": 18, "semant": 18, "which": [18, 19], "major": 18, "minor": 18, "patch": 18, "small": 18, "bugfix": 18, "break": 18, "setuptools_scm": 18, "automat": 18, "pyproject": 18, "toml": 18, "infer": 18, "wish": 18, "bump": 18, "m": 18, "web": 18, "interfac": [18, 20], "addit": 18, "determin": 18, "latest": [18, 19], "host": 18, "page": 18, "neuroinformat": 18, "unit": [18, 19], "Its": 18, "locat": 18, "doc": 18, "written": 18, "restructuredtext": 18, "markdown": 18, "md": 18, "homepag": 18, "websit": 18, "rst": 18, "link": 18, "toctre": 18, "direct": 18, "pydata": 18, "theme": 18, "handl": 18, "docs_build_and_deploi": 18, "broken": 18, "whenev": 18, "publish": 18, "sync": 18, "now": 18, "header": 18, "increment": 18, "h1": 18, "h2": 18, "h3": 18, "without": 18, "my_new_fil": 18, "maxdepth": 18, "hidden": 18, "existing_fil": 18, "introduc": 18, "face": 18, "api_index": 18, "currentmodul": 18, "new_modul": 18, "autosummari": 18, "auto_api": 18, "new_funct": 18, "newclass": 18, "structur": 18, "relev": [18, 19], "view": [18, 19], "txt": 18, "Then": [18, 19], "browser": 18, "refresh": 18, "after": 18, "remov": 18, "rm": 18, "rf": 18, "maintain": 18, "our": 18, "platform": 18, "choic": 18, "call": [18, 19], "gin": 18, "german": 18, "node": 18, "like": [18, 19], "cli": 18, "start": [18, 20], "softwar": [18, 19, 20], "pooch": 18, "url": 18, "subsequ": [18, 19], "nice": 18, "util": 18, "verif": 18, "sha256": 18, "hash": 18, "decompress": 18, "archiv": 18, "pose_data": 18, "manag": 18, "known": 18, "alreadi": [18, 19], "By": 18, "data_dir": 18, "core": 18, "account": 18, "collabor": 18, "credenti": 18, "login": 18, "termin": 18, "upload": 18, "synchronis": 18, "bidirection": 18, "checksum": 18, "sha256sum": 18, "file_hash": 18, "text": 18, "given": 18, "make_registri": 18, "sha256_registri": 18, "registri": 18, "correct": 18, "previou": 18, "step": 18, "perform": [18, 20], "avoid": 18, "environ": 19, "whatev": 19, "ve": 19, "env": 19, "next": 19, "releas": 19, "older": 19, "version": 19, "updat": 19, "upgrad": 19, "develop": [19, 20], "edit": 19, "contribut": 19, "pd": 19, "read_hdf": 19, "prefix": 19, "On": 19, "simpli": 19, "feed": 19, "shown": 19, "repres": 19, "represent": 19, "cell": 19, "appropri": 19, "z": 19, "otherwis": 19, "numpi": 19, "learn": 19, "document": 19, "were": 19, "subset": 19, "ds_sel": 19, "slice": 19, "individual1": 19, "individual2": 19, "snout": 19, "combin": 19, "appli": 19, "result": [19, 20], "rather": 19, "than": 19, "power": 19, "visualis": [19, 20], "inspir": [19, 20], "disk": 19, "varieti": 19, "support": 19, "save_pos": 19, "instead": 19, "to_hdf": 19, "to_csv": 19, "kinemat": 20, "bodi": 20, "neurosci": 20, "ethologi": 20, "research": 20, "api": 20, "stai": 20, "tune": 20, "suffici": 20, "scientif": 20, "subject": 20, "suggest": 20, "evalu": 20, "qualiti": 20, "oper": 20, "calcul": 20, "speed": 20, "acceler": 20, "joint": 20, "angl": 20, "produc": 20, "report": 20, "cover": 20, "serv": 20, "dlc2kinemat": 20, "pyrat": 20, "kino": 20, "wazp": 20}, "objects": {"movement.datasets": [[1, 0, 1, "", "fetch_pose_data_path"], [2, 0, 1, "", "list_pose_data"]], "movement.io.load_poses": [[3, 0, 1, "", "from_dlc_df"], [4, 0, 1, "", "from_dlc_file"], [5, 0, 1, "", "from_sleap_file"]], "movement.io.save_poses": [[6, 0, 1, "", "to_dlc_df"], [7, 0, 1, "", "to_dlc_file"]], "movement.io.validators": [[8, 1, 1, "", "ValidFile"], [9, 1, 1, "", "ValidHDF5"], [10, 1, 1, "", "ValidPoseTracks"], [11, 1, 1, "", "ValidPosesCSV"]], "movement.io.validators.ValidFile": [[8, 2, 1, "", "__init__"]], "movement.io.validators.ValidHDF5": [[9, 2, 1, "", "__init__"]], "movement.io.validators.ValidPoseTracks": [[10, 2, 1, "", "__init__"], [10, 3, 1, "", "fps"], [10, 3, 1, "", "individual_names"], [10, 3, 1, "", "keypoint_names"], [10, 3, 1, "", "scores_array"], [10, 3, 1, "", "tracks_array"]], "movement.io.validators.ValidPosesCSV": [[11, 2, 1, "", "__init__"]], "movement.logging": [[12, 0, 1, "", "configure_logging"], [13, 0, 1, "", "log_error"], [14, 0, 1, "", "log_warning"]]}, "objtypes": {"0": "py:function", "1": "py:class", "2": "py:method", "3": "py:attribute"}, "objnames": {"0": ["py", "function", "Python function"], "1": ["py", "class", "Python class"], "2": ["py", "method", "Python method"], "3": ["py", "attribute", "Python attribute"]}, "titleterms": {"api": [0, 18], "refer": [0, 18], "input": 0, "output": 0, "dataset": [0, 1, 2, 16, 19], "log": [0, 12, 13, 14], "movement": [1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 19, 20], "fetch_pose_data_path": 1, "list_pose_data": 2, "io": [3, 4, 5, 6, 7, 8, 9, 10, 11], "load_pos": [3, 4, 5], "from_dlc_df": 3, "from_dlc_fil": 4, "from_sleap_fil": 5, "save_pos": [6, 7], "to_dlc_df": 6, "to_dlc_fil": 7, "valid": [8, 9, 10, 11], "validfil": 8, "validhdf5": 9, "validposetrack": 10, "validposescsv": 11, "configure_log": 12, "log_error": 13, "log_warn": 14, "exampl": [15, 16, 18], "load": [16, 19], "explor": 16, "pose": 16, "track": 16, "import": 16, "fetch": [16, 18], "an": 16, "select": [16, 19], "plot": [16, 19], "data": [16, 18, 19], "xarrai": 16, "trajectori": 16, "comput": 17, "time": 17, "how": 18, "contribut": 18, "code": 18, "creat": 18, "develop": 18, "environ": 18, "pull": 18, "request": 18, "guidelin": 18, "format": 18, "pre": 18, "commit": 18, "hook": 18, "test": 18, "continu": 18, "integr": 18, "version": 18, "releas": 18, "document": 18, "edit": 18, "updat": 18, "build": 18, "local": 18, "sampl": 18, "ad": 18, "new": 18, "get": 19, "start": 19, "instal": 19, "work": 19, "structur": 19, "index": 19, "save": 19, "statu": 20, "aim": 20, "relat": 20, "project": 20}, "envversion": {"sphinx.domains.c": 3, "sphinx.domains.changeset": 1, "sphinx.domains.citation": 1, "sphinx.domains.cpp": 9, "sphinx.domains.index": 1, "sphinx.domains.javascript": 3, "sphinx.domains.math": 2, "sphinx.domains.python": 4, "sphinx.domains.rst": 2, "sphinx.domains.std": 2, "sphinx.ext.viewcode": 1, "sphinx.ext.intersphinx": 1, "nbsphinx": 4, "sphinx": 58}, "alltitles": {"API Reference": [[0, "api-reference"]], "Input/Output": [[0, "input-output"]], "Datasets": [[0, "datasets"]], "Logging": [[0, "logging"]], "movement.datasets.fetch_pose_data_path": [[1, "movement-datasets-fetch-pose-data-path"]], "movement.datasets.list_pose_data": [[2, "movement-datasets-list-pose-data"]], "movement.io.load_poses.from_dlc_df": [[3, "movement-io-load-poses-from-dlc-df"]], "movement.io.load_poses.from_dlc_file": [[4, "movement-io-load-poses-from-dlc-file"]], "movement.io.load_poses.from_sleap_file": [[5, "movement-io-load-poses-from-sleap-file"]], "movement.io.save_poses.to_dlc_df": [[6, "movement-io-save-poses-to-dlc-df"]], "movement.io.save_poses.to_dlc_file": [[7, "movement-io-save-poses-to-dlc-file"]], "movement.io.validators.ValidFile": [[8, "movement-io-validators-validfile"]], "movement.io.validators.ValidHDF5": [[9, "movement-io-validators-validhdf5"]], "movement.io.validators.ValidPoseTracks": [[10, "movement-io-validators-validposetracks"]], "movement.io.validators.ValidPosesCSV": [[11, "movement-io-validators-validposescsv"]], "movement.logging.configure_logging": [[12, "movement-logging-configure-logging"]], "movement.logging.log_error": [[13, "movement-logging-log-error"]], "movement.logging.log_warning": [[14, "movement-logging-log-warning"]], "Examples": [[15, "examples"]], "Load and explore pose tracks": [[16, "load-and-explore-pose-tracks"]], "Imports": [[16, "imports"]], "Fetch an example dataset": [[16, "fetch-an-example-dataset"]], "Load the dataset": [[16, "load-the-dataset"]], "Select and plot data with xarray": [[16, "select-and-plot-data-with-xarray"]], "Trajectory plots": [[16, "trajectory-plots"]], "Computation times": [[17, "computation-times"]], "How to Contribute": [[18, "how-to-contribute"]], "Contributing code": [[18, "contributing-code"]], "Creating a development environment": [[18, "creating-a-development-environment"]], "Pull requests": [[18, "pull-requests"]], "Development guidelines": [[18, "development-guidelines"]], "Formatting and pre-commit hooks": [[18, "formatting-and-pre-commit-hooks"]], "Testing": [[18, "testing"]], "Continuous integration": [[18, "continuous-integration"]], "Versioning and releases": [[18, "versioning-and-releases"]], "Contributing documentation": [[18, "contributing-documentation"]], "Editing the documentation": [[18, "editing-the-documentation"]], "Updating the API reference": [[18, "updating-the-api-reference"]], "Updating the examples": [[18, "updating-the-examples"]], "Building the documentation locally": [[18, "building-the-documentation-locally"]], "Sample data": [[18, "sample-data"]], "Fetching data": [[18, "fetching-data"]], "Adding new data": [[18, "adding-new-data"]], "Getting Started": [[19, "getting-started"]], "Installation": [[19, "installation"]], "Loading data": [[19, "loading-data"]], "Working with movement datasets": [[19, "working-with-movement-datasets"]], "Dataset structure": [[19, "dataset-structure"]], "Indexing and selection": [[19, "indexing-and-selection"]], "Plotting": [[19, "plotting"]], "Saving data": [[19, "saving-data"]], "movement": [[20, "movement"]], "Status": [[20, "status"]], "Aims": [[20, "aims"]], "Related projects": [[20, "related-projects"]]}, "indexentries": {"fetch_pose_data_path() (in module movement.datasets)": [[1, "movement.datasets.fetch_pose_data_path"]], "list_pose_data() (in module movement.datasets)": [[2, "movement.datasets.list_pose_data"]], "from_dlc_df() (in module movement.io.load_poses)": [[3, "movement.io.load_poses.from_dlc_df"]], "from_dlc_file() (in module movement.io.load_poses)": [[4, "movement.io.load_poses.from_dlc_file"]], "from_sleap_file() (in module movement.io.load_poses)": [[5, "movement.io.load_poses.from_sleap_file"]], "to_dlc_df() (in module movement.io.save_poses)": [[6, "movement.io.save_poses.to_dlc_df"]], "to_dlc_file() (in module movement.io.save_poses)": [[7, "movement.io.save_poses.to_dlc_file"]], "validfile (class in movement.io.validators)": [[8, "movement.io.validators.ValidFile"]], "__init__() (movement.io.validators.validfile method)": [[8, "movement.io.validators.ValidFile.__init__"]], "validhdf5 (class in movement.io.validators)": [[9, "movement.io.validators.ValidHDF5"]], "__init__() (movement.io.validators.validhdf5 method)": [[9, "movement.io.validators.ValidHDF5.__init__"]], "validposetracks (class in movement.io.validators)": [[10, "movement.io.validators.ValidPoseTracks"]], "__init__() (movement.io.validators.validposetracks method)": [[10, "movement.io.validators.ValidPoseTracks.__init__"]], "fps (movement.io.validators.validposetracks attribute)": [[10, "movement.io.validators.ValidPoseTracks.fps"]], "individual_names (movement.io.validators.validposetracks attribute)": [[10, "movement.io.validators.ValidPoseTracks.individual_names"]], "keypoint_names (movement.io.validators.validposetracks attribute)": [[10, "movement.io.validators.ValidPoseTracks.keypoint_names"]], "scores_array (movement.io.validators.validposetracks attribute)": [[10, "movement.io.validators.ValidPoseTracks.scores_array"]], "tracks_array (movement.io.validators.validposetracks attribute)": [[10, "movement.io.validators.ValidPoseTracks.tracks_array"]], "validposescsv (class in movement.io.validators)": [[11, "movement.io.validators.ValidPosesCSV"]], "__init__() (movement.io.validators.validposescsv method)": [[11, "movement.io.validators.ValidPosesCSV.__init__"]], "configure_logging() (in module movement.logging)": [[12, "movement.logging.configure_logging"]], "log_error() (in module movement.logging)": [[13, "movement.logging.log_error"]], "log_warning() (in module movement.logging)": [[14, "movement.logging.log_warning"]]}})
\ No newline at end of file