36-tools.Rmd

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# Resources

## scRNA-seq protocols

* [SMART-seq2](http://www.nature.com/nmeth/journal/v10/n11/full/nmeth.2639.html)
* [CELL-seq](http://www.cell.com/cell-reports/abstract/S2211-1247%2812%2900228-8)
* [Drop-seq](http://mccarrolllab.com/dropseq/)
* [UMI](http://www.nature.com/nmeth/journal/v11/n2/abs/nmeth.2772.html)
* [STRT-Seq](http://www.ncbi.nlm.nih.gov/pubmed/21543516)

## External RNA Control Consortium (ERCC)

[ERCCs](https://www.thermofisher.com/order/catalog/product/4456740)

## scRNA-seq analysis tools

Extensive list of software packages (and the people developing these methods) for single-cell data analysis:

* [awesome-single-cell](https://github.com/seandavi/awesome-single-cell)

Tallulah Andrews' single cell processing scripts:

* [scRNASeqPipeline](https://github.com/tallulandrews/scRNASeqPipeline)

## scRNA-seq public datasets

* [Hemberg group's public datasets](https://hemberg-lab.github.io/scRNA.seq.datasets/)