galaxy_update_configs_playbook.yml

- hosts: galaxy-handlers
  become: true
  vars_files:
      - group_vars/all.yml
      - group_vars/galaxy_etca.yml
      - group_vars/VAULT
      - group_vars/galaxyservers.yml
      - group_vars/galaxy_etca_slurm.yml
      - host_vars/galaxy.usegalaxy.org.au.yml
      - host_vars/galaxy-handlers.usegalaxy.org.au.yml
      - secret_group_vars/stats_server_vault
  handlers:
    - include: handlers/galaxy_handlers.yml
    - name: galaxy gravity remote restart
      become: true
      become_user: ubuntu
      command: 'ssh galaxy "sudo {{ galaxy_venv_dir }}/bin/galaxyctl -c {{ galaxy_config_file }} graceful"'
      listen: "remote restart galaxy"
  tasks:
    - name: Template and copy config files
      when: not ansible_user == 'jenkins_bot'  # do not let the automatic process object store or restart galaxy
      block: 
      - name: copy job_conf file
        # Note: This step requires only the restart of galaxy processes running on galaxy-handlers VM
        template:
          src: "{{ galaxy_config_template_src_dir }}/config/galaxy_job_conf.yml.j2"
          dest: "{{ galaxy_config_dir }}/job_conf.yml"
        notify: restart handlers
      - name: template object store conf file
        # Note: This step requires the restart of all galaxy processes (galaxyctl graceful run on both VMs)
        template:
          src: "{{ galaxy_config_template_src_dir }}/config/galaxy_object_store_conf.yml.j2"
          dest: "{{ galaxy_config_dir }}/object_store_conf.yml"
        register: object_store_task
        notify:
          - restart galaxy
          - remote restart galaxy
      - name: template toolbox filters
        # Note: This step requires only the restart of galaxy processes running on galaxy VM
        template:
          src: "{{ galaxy_config_template_src_dir }}/toolbox/filters/ga_filters.py.j2"
          dest: "{{ galaxy_toolbox_filters_dir }}/ga_filters.py"
        notify:
          - remote restart galaxy
      - name: Copy tool configuration files (static) # does not require a restart
        copy:
          src: "{{ galaxy_config_file_src_dir }}/config/{{ item }}"
          dest: "{{ galaxy_config_dir }}/{{ item }}"
        with_items:
          - local_tool_conf.xml
          - tool_conf.xml
      - name: Copy tool configuration files (template) # does not require a restart
        template:
          src: "{{ galaxy_config_template_src_dir }}/config/{{ item }}.j2"
          dest: "{{ galaxy_config_dir }}/{{ item }}"
        with_items:
          - tool_conf_interactive.xml
      - name: Copy tool data table config # requires a restart of both gunicorn and handlers
        copy:
          src: "{{ galaxy_config_file_src_dir }}/config/{{ item }}"
          dest: "{{ galaxy_config_dir }}/{{ item }}"
        with_items:
          - tool_data_table_conf.xml
        notify:
          - restart galaxy
          - remote restart galaxy
    # following tasks are OK for jenkins_bot
    - name: Install dynamic job rules (static) # dynamic job rules tasks copied from https://github.com/galaxyproject/ansible-galaxy/blob/main/tasks/static_setup.yml
      copy:
        src: "{{ galaxy_dynamic_job_rules_src_dir }}/{{ item }}"
        dest: "{{ galaxy_dynamic_job_rules_dir }}/{{ item }}"
        mode: 0644
      with_items: "{{ galaxy_dynamic_job_rules }}"
      when: not item.endswith(".j2")
    - name: Install dynamic job rules (template)
      template:
        src: "{{ galaxy_dynamic_job_rules_src_dir }}/{{ item }}"
        dest: "{{ galaxy_dynamic_job_rules_dir }}/{{ item | regex_replace(regex) }}"
        mode: 0644
      vars:
        regex: '\.j2$'
      with_items: "{{ galaxy_dynamic_job_rules }}"
      when: item.endswith(".j2")
    # TODO: Most tasks here are not appropriate for the jenkins_bot automatic update process. To make them auto-update 
    # friendly (if this is actually desirable) we'd need to introduce linting for xml, templated xml and yml files