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traceback, this input video had 300 frames:
--------------------------------------------------------------------------- BatchItemUnsuccessfulError Traceback (most recent call last) Cell In [24], line 2 1 df = df.caiman.reload_from_disk() ----> 2 df.iloc[-1].mcorr.get_output() File ~/repos/mesmerize-core/mesmerize_core/caiman_extensions/_utils.py:24, in validate.<locals>.dec.<locals>.wrapper(self, *args, **kwargs) 22 if not self._series["outputs"]["success"]: 23 tb = self._series["outputs"]["traceback"] ---> 24 raise BatchItemUnsuccessfulError(f"Batch item was unsuccessful, traceback from subprocess:\n{tb}") 25 return func(self, *args, **kwargs) BatchItemUnsuccessfulError: Batch item was unsuccessful, traceback from subprocess: multiprocessing.pool.RemoteTraceback: """ Traceback (most recent call last): File "/usr/local/lib/python3.10/multiprocessing/pool.py", line 125, in worker result = (True, func(*args, **kwds)) File "/usr/local/lib/python3.10/multiprocessing/pool.py", line 48, in mapstar return list(map(*args)) File "/home/kushalk/repos/CaImAn/caiman/summary_images.py", line 784, in local_correlations_movie_parallel mv = cm.load(mv_name, subindices=idx, in_memory=True) File "/home/kushalk/repos/CaImAn/caiman/base/movies.py", line 1447, in load return load_movie_chain(file_name, File "/home/kushalk/repos/CaImAn/caiman/base/movies.py", line 1774, in load_movie_chain m = load(f, File "/home/kushalk/repos/CaImAn/caiman/base/movies.py", line 1706, in load images = images[subindices] File "/home/kushalk/python-venvs/mescore/lib/python3.10/site-packages/numpy/core/memmap.py", line 334, in __getitem__ res = super().__getitem__(index) IndexError: index -700 is out of bounds for axis 0 with size 300 """ The above exception was the direct cause of the following exception: Traceback (most recent call last): File "/home/kushalk/repos/mesmerize-core/mesmerize_core/algorithms/mcorr.py", line 95, in run_algo Cns = local_correlations_movie_offline( File "/home/kushalk/repos/CaImAn/caiman/summary_images.py", line 773, in local_correlations_movie_offline parallel_result = dview.map_async(local_correlations_movie_parallel, params).get(4294967) File "/usr/local/lib/python3.10/multiprocessing/pool.py", line 771, in get raise self._value IndexError: index -700 is out of bounds for axis 0 with size 300
The issue actually comes from computing the local correlations, we set the default window_size to 1000: https://github.com/nel-lab/mesmerize-core/blob/master/mesmerize_core/algorithms/mcorr.py#L98
We should probably allow a parameter outside of "main" where these things can be set.
"main"
The text was updated successfully, but these errors were encountered:
this is basically done in #183
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traceback, this input video had 300 frames:
The issue actually comes from computing the local correlations, we set the default window_size to 1000: https://github.com/nel-lab/mesmerize-core/blob/master/mesmerize_core/algorithms/mcorr.py#L98
We should probably allow a parameter outside of
"main"
where these things can be set.The text was updated successfully, but these errors were encountered: