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Parallelize projection computation and avoid running out of memory #239

Parallelize projection computation and avoid running out of memory

Parallelize projection computation and avoid running out of memory #239

Workflow file for this run

# This workflow will install Python dependencies, run tests and lint with a single version of Python
# For more information see: https://help.github.com/actions/language-and-framework-guides/using-python-with-github-actions
name: Linux pip
on:
pull_request:
branches:
- master
- dev
push:
branches: [ master ]
permissions:
contents: read
jobs:
build-linux-pip:
runs-on: ubuntu-latest
steps:
- uses: actions/checkout@v3
- name: Set up Python 3.9
uses: actions/setup-python@v3
with:
python-version: "3.9"
- name: Install deps
run: |
python -m pip install --upgrade pip setuptools wheel
- name: install caiman
run: |
cd ..
git clone https://github.com/flatironinstitute/CaImAn.git
cd CaImAn
pip install -r requirements.txt
pip install .
caimanmanager install
- name: Install mesmerize-core
run: |
pip install .
- name: Test with pytest
run: |
pip install pytest
DOWNLOAD_GROUND_TRUTHS=1 pytest -s .