Parallelize projection computation and avoid running out of memory #238
Workflow file for this run
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| name: Linux Conda | |
| on: | |
| pull_request: | |
| branches: | |
| - master | |
| - dev | |
| push: | |
| branches: [ master ] | |
| jobs: | |
| build-linux-conda: | |
| runs-on: ubuntu-latest | |
| strategy: | |
| max-parallel: 5 | |
| steps: | |
| - uses: actions/checkout@v3 | |
| - name: Set up Python '3.10' | |
| uses: actions/setup-python@v3 | |
| with: | |
| python-version: '3.10' | |
| - name: Add conda to system path | |
| run: | | |
| # $CONDA is an environment variable pointing to the root of the miniconda directory | |
| echo $CONDA/bin >> $GITHUB_PATH | |
| - name: Install mamba | |
| run: | | |
| conda install -c conda-forge mamba python=3.10 | |
| conda clean -a | |
| # - name: install caiman | |
| # run: | | |
| # mamba install -c conda-forge caiman | |
| - name: install mesmerize-core | |
| run: | | |
| mamba env update -n base --file environment.yml | |
| caimanmanager install | |
| pip install . | |
| - name: Test with pytest | |
| run: | | |
| mamba install pytest | |
| DOWNLOAD_GROUND_TRUTHS=1 pytest -s . | |