Use F order when reshaping masks (#321) #237
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
# This workflow will install Python dependencies, run tests and lint with a single version of Python | |
# For more information see: https://help.github.com/actions/language-and-framework-guides/using-python-with-github-actions | |
name: Linux pip | |
on: | |
pull_request: | |
branches: | |
- master | |
- dev | |
push: | |
branches: [ master ] | |
permissions: | |
contents: read | |
jobs: | |
build-linux-pip: | |
runs-on: ubuntu-latest | |
steps: | |
- uses: actions/checkout@v3 | |
- name: Set up Python 3.9 | |
uses: actions/setup-python@v3 | |
with: | |
python-version: "3.9" | |
- name: Install deps | |
run: | | |
python -m pip install --upgrade pip setuptools wheel | |
- name: install caiman | |
run: | | |
cd .. | |
git clone https://github.com/flatironinstitute/CaImAn.git | |
cd CaImAn | |
pip install -r requirements.txt | |
pip install . | |
caimanmanager install | |
- name: Install mesmerize-core | |
run: | | |
pip install . | |
- name: Test with pytest | |
run: | | |
pip install pytest | |
DOWNLOAD_GROUND_TRUTHS=1 pytest -s . |