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<!DOCTYPE html>
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<title>Page not found | index.knit</title>
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<li><a href="./">Pangenomics Workshop NCGR</a></li>
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<li class="chapter" data-level="1" data-path=""><a href="#introduction-to-pangenomics"><i class="fa fa-check"></i><b>1</b> Introduction to Pangenomics</a>
<ul>
<li class="chapter" data-level="1.1" data-path=""><a href="#what-is-a-pangenome"><i class="fa fa-check"></i><b>1.1</b> What is a “pangenome”?</a>
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<li class="chapter" data-level="1.1.1" data-path=""><a href="#open-vs.-closed-genomes"><i class="fa fa-check"></i><b>1.1.1</b> Open vs. Closed Genomes</a></li>
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<li class="chapter" data-level="1.1.5" data-path=""><a href="#what-are-pangenomes-good-for"><i class="fa fa-check"></i><b>1.1.5</b> What are pangenomes good for?</a></li>
<li class="chapter" data-level="1.1.6" data-path=""><a href="#computational-pangenomics"><i class="fa fa-check"></i><b>1.1.6</b> Computational Pangenomics</a></li>
<li class="chapter" data-level="1.1.7" data-path=""><a href="#pangenome-representations"><i class="fa fa-check"></i><b>1.1.7</b> Pangenome Representations</a></li>
<li class="chapter" data-level="1.1.8" data-path=""><a href="#genomevariation-graphs"><i class="fa fa-check"></i><b>1.1.8</b> Genome/Variation Graphs</a></li>
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<li class="chapter" data-level="1.1.10" data-path=""><a href="#mapping-reads-to-variation-graphs"><i class="fa fa-check"></i><b>1.1.10</b> Mapping Reads to Variation Graphs</a></li>
<li class="chapter" data-level="1.1.11" data-path=""><a href="#datayeast-genomes"><i class="fa fa-check"></i><b>1.1.11</b> Data/Yeast Genomes:</a></li>
<li class="chapter" data-level="1.1.12" data-path=""><a href="#yeast-assemblies"><i class="fa fa-check"></i><b>1.1.12</b> Yeast Assemblies</a></li>
<li class="chapter" data-level="1.1.13" data-path=""><a href="#sk1-illumina-reads"><i class="fa fa-check"></i><b>1.1.13</b> SK1 Illumina Reads</a></li>
<li class="chapter" data-level="1.1.14" data-path=""><a href="#cup1-gene"><i class="fa fa-check"></i><b>1.1.14</b> CUP1 Gene</a></li>
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