From c8e43a56fad71620f5290f895655f5fa0d17ee23 Mon Sep 17 00:00:00 2001
From: pongorlorinc <32104075+pongorlorinc@users.noreply.github.com>
Date: Wed, 10 Apr 2019 12:23:08 -0400
Subject: [PATCH 1/2] Update README.md

---
 README.md | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/README.md b/README.md
index 6e006bc..f2c9294 100644
--- a/README.md
+++ b/README.md
@@ -5,7 +5,7 @@ BAMscale
 
 BAMscale is a one-step tool for either 1) quantifying and normalizing the coverage of peaks or 2) generated scaled BigWig files for easy visualization of commonly used DNA-seq capture based methods.
 
-For detailed information, visit the [wiki](https://github.com/pongorlorinc/BAMscale/wiki) page
+For detailed information, visit the [wiki](https://github.com/ncbi/BAMscale/wiki) page
 
 ## Reference
 

From b1cf5ff12debba1278372e16e5df888ad26c8481 Mon Sep 17 00:00:00 2001
From: pongorlorinc <32104075+pongorlorinc@users.noreply.github.com>
Date: Tue, 16 Apr 2019 08:38:13 -0400
Subject: [PATCH 2/2] Update README.md

---
 README.md | 23 +++++++++++++++++++++++
 1 file changed, 23 insertions(+)

diff --git a/README.md b/README.md
index f2c9294..7bc8c57 100644
--- a/README.md
+++ b/README.md
@@ -19,6 +19,29 @@ http://www.htslib.org/
 ### libBigWig
 Clone the libBigWig repository from GitHub: https://github.com/dpryan79/libBigWig
 
+    git clone https://github.com/dpryan79/libBigWig.git
+
+Compile it and set the environment variables for BAMscale
+
+    cd libBigWig/
+    make
+    export LIBBIGWIG_DIR=`pwd`
+    export CPPFLAGS="-I $LIBBIGWIG_DIR"
+    export LDFLAGS="-L $LIBBIGWIG_DIR -Wl,-rpath,$LIBBIGWIG_DIR"
+    
+## Installation
+
+After compiling the libBigWig library and samtools (if not already installed) clone the BAMscale from GitHub
+
+    git clone https://github.com/ncbi/BAMscale.git
+    
+and go to the BAMscale folder to compile the program:
+
+    cd BAMscale/
+    make
+    
+A bin folder will be created with the BAMscale executable.
+
 ## Usage
 
 ### Peak quantification