diff --git a/usegalaxy.org/annotation.yml.lock b/usegalaxy.org/annotation.yml.lock index 0a9788d8..188aac5c 100644 --- a/usegalaxy.org/annotation.yml.lock +++ b/usegalaxy.org/annotation.yml.lock @@ -25,6 +25,7 @@ tools: revisions: - 09855551d713 - 28433faa6e42 + - bd0e53f3a891 - ca6d970d931c tool_panel_section_id: annotation tool_panel_section_label: Annotation @@ -34,6 +35,7 @@ tools: - 6519ebe25019 - 7be22100e5e1 - dc027fa56d55 + - f1e653756174 tool_panel_section_id: annotation tool_panel_section_label: Annotation - name: bp_genbank2gff3 diff --git a/usegalaxy.org/assembly.yml b/usegalaxy.org/assembly.yml index 4bb473e0..88a98e52 100644 --- a/usegalaxy.org/assembly.yml +++ b/usegalaxy.org/assembly.yml @@ -94,3 +94,5 @@ tools: owner: iuc - name: refseq_masher owner: nml +- name: nextdenovo + owner: bgruening diff --git a/usegalaxy.org/assembly.yml.lock b/usegalaxy.org/assembly.yml.lock index 7f937675..a7b5ba6b 100644 --- a/usegalaxy.org/assembly.yml.lock +++ b/usegalaxy.org/assembly.yml.lock @@ -444,3 +444,9 @@ tools: - 1ec42f033bb4 tool_panel_section_id: assembly tool_panel_section_label: Assembly +- name: nextdenovo + owner: bgruening + revisions: + - 733eab97b979 + tool_panel_section_id: assembly + tool_panel_section_label: Assembly diff --git a/usegalaxy.org/chip_seq.yml.lock b/usegalaxy.org/chip_seq.yml.lock index 67ed2ffb..8893a553 100644 --- a/usegalaxy.org/chip_seq.yml.lock +++ b/usegalaxy.org/chip_seq.yml.lock @@ -68,6 +68,7 @@ tools: - name: pe_histogram owner: iuc revisions: + - 594b85e4237a - bd1416eea1f0 tool_panel_section_id: chip_seq tool_panel_section_label: ChIP-seq diff --git a/usegalaxy.org/convert_formats.yml.lock b/usegalaxy.org/convert_formats.yml.lock index 2ba98174..9c4ad86d 100644 --- a/usegalaxy.org/convert_formats.yml.lock +++ b/usegalaxy.org/convert_formats.yml.lock @@ -61,6 +61,7 @@ tools: revisions: - 2dcfbbf9071a - 68f57cc8fad0 + - 78fb18899c99 - b8cdc0507586 tool_panel_section_id: convert_formats tool_panel_section_label: Convert Formats @@ -70,11 +71,13 @@ tools: - 297962e79f39 - 4844c1810c16 - a64c24430f5e + - ac3fed111eb6 tool_panel_section_id: convert_formats tool_panel_section_label: Convert Formats - name: fastq_to_tabular owner: devteam revisions: + - 43807a65369f - 4b347702c4aa - 614a63f14adf - ccf4e1d1fcbe diff --git a/usegalaxy.org/fasta_fastq.yml.lock b/usegalaxy.org/fasta_fastq.yml.lock index 3d06b004..37ed7f32 100644 --- a/usegalaxy.org/fasta_fastq.yml.lock +++ b/usegalaxy.org/fasta_fastq.yml.lock @@ -125,6 +125,7 @@ tools: revisions: - 09a2199cd356 - 822cc1e6274e + - 8d958759cf2a - c885369b207b tool_panel_section_id: fasta_fastq tool_panel_section_label: FASTA/FASTQ @@ -133,6 +134,7 @@ tools: revisions: - 2ccb8dcabddc - 3e396e702cea + - b41c2c1bcfbf - ef49268ee579 tool_panel_section_id: fasta_fastq tool_panel_section_label: FASTA/FASTQ @@ -140,6 +142,7 @@ tools: owner: devteam revisions: - 03d57fea6482 + - 523c2aff0376 - b7ce72b00e62 - f3936d0632cb tool_panel_section_id: fasta_fastq @@ -155,6 +158,7 @@ tools: revisions: - 249c8393f2d4 - 35e38452bb3f + - 397dc333436b - 9bbe5b7ffa12 - e39cc71d3ed6 tool_panel_section_id: fasta_fastq @@ -162,6 +166,7 @@ tools: - name: fastq_masker_by_quality owner: devteam revisions: + - 4e1d64e6385f - 9282652e7234 - 9dfda4e310ed - eb592e9ec47a @@ -173,6 +178,7 @@ tools: - 4ac14b275aca - 5b87038565bb - 7861f3b10c68 + - e30352e889fe tool_panel_section_id: fasta_fastq tool_panel_section_label: FASTA/FASTQ - name: fastq_groomer @@ -181,6 +187,7 @@ tools: - 47e5dbc3e790 - 71e5fa25b8a2 - 8611b80a14d6 + - e9f8633db0a2 tool_panel_section_id: fasta_fastq tool_panel_section_label: FASTA/FASTQ - name: fastq_filter @@ -188,6 +195,7 @@ tools: revisions: - 06934412f56d - 10b75444feae + - '144275714590' - 81a9090d6df3 tool_panel_section_id: fasta_fastq tool_panel_section_label: FASTA/FASTQ @@ -195,6 +203,7 @@ tools: owner: devteam revisions: - 56389130cb63 + - 9115b978ce10 - b05e39b9c170 - f1dc2a761c30 tool_panel_section_id: fasta_fastq @@ -232,6 +241,7 @@ tools: - 2d0d13b0b0f1 - 33794bdb7fe0 - b63b2bfb3ea3 + - f0b18efb97f1 tool_panel_section_id: fasta_fastq tool_panel_section_label: FASTA/FASTQ - name: fastq_trimmer_by_quality @@ -276,6 +286,7 @@ tools: owner: devteam revisions: - 2051602a5f97 + - 5cbde03c1103 - 7d37cfda8e00 - e12f68d2cc4e tool_panel_section_id: fasta_fastq diff --git a/usegalaxy.org/fastq_quality_control.yml.lock b/usegalaxy.org/fastq_quality_control.yml.lock index 487d05c5..c631eb02 100644 --- a/usegalaxy.org/fastq_quality_control.yml.lock +++ b/usegalaxy.org/fastq_quality_control.yml.lock @@ -43,6 +43,7 @@ tools: - b1cea1b2fcd0 - e2cf940128d5 - f0e7deab6518 + - f86c27295151 tool_panel_section_id: fastq_quality_control tool_panel_section_label: FASTQ Quality Control - name: fastx_quality_statistics diff --git a/usegalaxy.org/graph_display_data.yml.lock b/usegalaxy.org/graph_display_data.yml.lock index 471c98b7..b49af4d8 100644 --- a/usegalaxy.org/graph_display_data.yml.lock +++ b/usegalaxy.org/graph_display_data.yml.lock @@ -271,6 +271,7 @@ tools: - name: pe_histogram owner: iuc revisions: + - 594b85e4237a - bd1416eea1f0 tool_panel_section_id: graph_display_data tool_panel_section_label: Graph/Display Data @@ -324,6 +325,7 @@ tools: owner: fubar revisions: - 0e592dcaeb7f + - 137e08517410 - 2fff478aca4b - 4aec47f872b3 - 56f9a6e0fe80 diff --git a/usegalaxy.org/metagenomic_analysis.yml.lock b/usegalaxy.org/metagenomic_analysis.yml.lock index bdd74991..c51a3835 100644 --- a/usegalaxy.org/metagenomic_analysis.yml.lock +++ b/usegalaxy.org/metagenomic_analysis.yml.lock @@ -333,6 +333,7 @@ tools: owner: iuc revisions: - 5a0fa29951ae + - 8388fe31d604 - b7429b53be2a - e562293ee5ec tool_panel_section_id: metagenomic_analysis @@ -340,6 +341,7 @@ tools: - name: khmer_extract_partitions owner: iuc revisions: + - 1061711538c6 - 2c763fb18010 - 98b53d46e851 - adb3dd5a899f @@ -349,6 +351,7 @@ tools: owner: iuc revisions: - 06d1d91c67e5 + - 570505540a7b - 77410799e8e9 - b3d513c7093e tool_panel_section_id: metagenomic_analysis @@ -356,6 +359,7 @@ tools: - name: khmer_filter_below_abundance_cutoff owner: iuc revisions: + - 00f7064c564b - 19607c740d19 - 569001af897d - b469ab47b490 @@ -364,6 +368,7 @@ tools: - name: khmer_normalize_by_median owner: iuc revisions: + - 4d23ab83ea29 - 557cc16931f4 - b1fe2ef3d244 - e84073b420a8 @@ -374,12 +379,14 @@ tools: revisions: - 385a965c6f87 - 55109291a355 + - 65b382bf9b7c - c018a72b523e tool_panel_section_id: metagenomic_analysis tool_panel_section_label: Metagenomic Analysis - name: khmer_filter_abundance owner: iuc revisions: + - 29a4d6e2ae9c - 8c6433857aa8 - 97f65399e30d - b86562b4f3fd @@ -391,6 +398,7 @@ tools: - 7624945cacd3 - c0caca5af183 - e0de12ae3fc2 + - e699e2747356 tool_panel_section_id: metagenomic_analysis tool_panel_section_label: Metagenomic Analysis - name: maxbin2 diff --git a/usegalaxy.org/presto.yml.lock b/usegalaxy.org/presto.yml.lock index 6bc26871..82d280c4 100644 --- a/usegalaxy.org/presto.yml.lock +++ b/usegalaxy.org/presto.yml.lock @@ -17,6 +17,7 @@ tools: revisions: - 097b44ff88db - 967b96c6005a + - aa3554e51549 - ef917c03493c - faba8f53524e tool_panel_section_id: presto @@ -25,6 +26,7 @@ tools: owner: iuc revisions: - 0b103d43a2c7 + - 1f3ae16f3655 - 620f3b0a1430 - 824d24bfe8dd tool_panel_section_id: presto @@ -33,6 +35,7 @@ tools: owner: iuc revisions: - 488cd05be723 + - 7f93403bc705 - fc1fd003bc80 - fd8f1ac582bd tool_panel_section_id: presto @@ -43,6 +46,7 @@ tools: - 1ed5b0772f98 - 4049467b8bb8 - 90315cb06d06 + - de864d852bce tool_panel_section_id: presto tool_panel_section_label: pRESTO - name: presto_pairseq @@ -50,6 +54,7 @@ tools: revisions: - 49e7407445c3 - 7bdff30820bf + - eed465eb14a3 - f47efbc66fad tool_panel_section_id: presto tool_panel_section_label: pRESTO @@ -59,6 +64,7 @@ tools: - 14e648d05cce - 36ad790eda96 - 98b0b4c22e69 + - df0797c61790 tool_panel_section_id: presto tool_panel_section_label: pRESTO - name: presto_filterseq @@ -66,6 +72,7 @@ tools: revisions: - 196b83ac37f2 - 33a09d40751f + - 4a4e086f6e38 - 7b102129b1e8 tool_panel_section_id: presto tool_panel_section_label: pRESTO @@ -73,6 +80,7 @@ tools: owner: iuc revisions: - 3364fd7073ca + - 852e7ca7f7de - c60bd515e46d - d1a1b738c119 tool_panel_section_id: presto @@ -83,6 +91,7 @@ tools: - 1844a3d2c887 - 5b059629cce0 - 7c7df98db5a9 + - ef31bdd0c9ed tool_panel_section_id: presto tool_panel_section_label: pRESTO - name: presto_assemblepairs @@ -91,6 +100,7 @@ tools: - 0af48f0b7eb8 - 44c980933450 - 540fcbdac82e + - af855eb44091 tool_panel_section_id: presto tool_panel_section_label: pRESTO - name: presto_alignsets @@ -98,6 +108,7 @@ tools: revisions: - 0b4bd722367d - 40102188d44e + - b401018e0614 - fa4cf8d895f4 tool_panel_section_id: presto tool_panel_section_label: pRESTO diff --git a/usegalaxy.org/rna_seq.yml.lock b/usegalaxy.org/rna_seq.yml.lock index 06e14b87..61f5d1df 100644 --- a/usegalaxy.org/rna_seq.yml.lock +++ b/usegalaxy.org/rna_seq.yml.lock @@ -180,6 +180,7 @@ tools: owner: iuc revisions: - 0f710191a66d + - 3c5e024a18cf - 3c97c841a443 - f99dd58de04f tool_panel_section_id: rna_seq @@ -534,5 +535,6 @@ tools: - 05f8e9d1e8b8 - 3198f52bffaa - 928a52b5c938 + - d3b0390f325f tool_panel_section_id: rna_seq tool_panel_section_label: RNA-seq diff --git a/usegalaxy.org/single_cell.yml.lock b/usegalaxy.org/single_cell.yml.lock index 6512df72..fcfbb83a 100644 --- a/usegalaxy.org/single_cell.yml.lock +++ b/usegalaxy.org/single_cell.yml.lock @@ -8,6 +8,7 @@ tools: revisions: - 0185bd174ea0 - 1072ce66b426 + - 40812a65a78b - 6adf98e782f3 - 6f5349dd5c49 - 70fa84e99463 @@ -23,6 +24,7 @@ tools: owner: iuc revisions: - 3081ff5c84a3 + - 4338bf96809e - 5c3ebe2adc77 - 6bd82ed14acd - 6c145a6868cc @@ -49,11 +51,13 @@ tools: - b409c2486353 - d636ce5cde16 - f87ed6503715 + - fc0321c000a3 tool_panel_section_id: single_cell tool_panel_section_label: Single-cell - name: scanpy_normalize owner: iuc revisions: + - 146ae5d70b47 - 51d945eab1e1 - 5342ce58cd1e - 56c0d4acef02 @@ -79,6 +83,7 @@ tools: - 6f83f8fd381f - aaa5da8e73a9 - b2df381a6004 + - cb43c5d3acd3 - edec35114f72 - f9353ee6a0d4 tool_panel_section_id: single_cell @@ -97,6 +102,7 @@ tools: - c65fce500915 - d18e7a6e5cd4 - e66884b1c1a5 + - fe8f16c594ec tool_panel_section_id: single_cell tool_panel_section_label: Single-cell - name: anndata_export diff --git a/usegalaxy.org/variant_calling.yml.lock b/usegalaxy.org/variant_calling.yml.lock index 799c336a..356a7c31 100644 --- a/usegalaxy.org/variant_calling.yml.lock +++ b/usegalaxy.org/variant_calling.yml.lock @@ -121,6 +121,7 @@ tools: - 3b4b2121842f - 4805fe3d8fda - 65432c3abf6c + - b11e8e9c23bf - dfadc322b065 - e1461b5c52a0 tool_panel_section_id: variant_calling diff --git a/usegalaxy.org/vcf_bcf.yml.lock b/usegalaxy.org/vcf_bcf.yml.lock index 7ce7d2f8..5c514659 100644 --- a/usegalaxy.org/vcf_bcf.yml.lock +++ b/usegalaxy.org/vcf_bcf.yml.lock @@ -6,6 +6,7 @@ tools: - name: vcffilter owner: devteam revisions: + - 4bdc111b2470 - 81972652519c - fa24bf0598f4 tool_panel_section_id: vcf_bcf @@ -36,6 +37,7 @@ tools: revisions: - 5b7120c66efc - dd44c3f416c3 + - ee60203e68d9 - f0580efedada tool_panel_section_id: vcf_bcf tool_panel_section_label: VCF/BCF