From 4d6c871096080fa832222295a14d24ba53e96dc6 Mon Sep 17 00:00:00 2001
From: mvdbeek <m.vandenbeek@gmail.com>
Date: Wed, 20 Nov 2024 13:18:24 +0100
Subject: [PATCH] Install mgnify tools

---
 usegalaxy.org/metagenomic_analysis.yml      |  8 +++++++-
 usegalaxy.org/metagenomic_analysis.yml.lock | 20 ++++++++++++++++++++
 usegalaxy.org/nanopore.yml.lock             |  1 +
 usegalaxy.org/rna_analysis.yml              |  6 ++++++
 usegalaxy.org/rna_analysis.yml.lock         | 18 ++++++++++++++++++
 5 files changed, 52 insertions(+), 1 deletion(-)
 create mode 100644 usegalaxy.org/rna_analysis.yml
 create mode 100644 usegalaxy.org/rna_analysis.yml.lock

diff --git a/usegalaxy.org/metagenomic_analysis.yml b/usegalaxy.org/metagenomic_analysis.yml
index b4ecc90e..f60ccf5e 100644
--- a/usegalaxy.org/metagenomic_analysis.yml
+++ b/usegalaxy.org/metagenomic_analysis.yml
@@ -169,4 +169,10 @@ tools:
 - name: checkm_tree
   owner: iuc
 - name: checkm_tree_qa
-  owner: iuc
\ No newline at end of file
+  owner: iuc
+- name: ampvis2_load
+  owner: iuc
+- name: mapseq
+  owner: iuc
+- name: mgnify_seqprep
+  owner: bgruening
diff --git a/usegalaxy.org/metagenomic_analysis.yml.lock b/usegalaxy.org/metagenomic_analysis.yml.lock
index c116507c..811bd18e 100644
--- a/usegalaxy.org/metagenomic_analysis.yml.lock
+++ b/usegalaxy.org/metagenomic_analysis.yml.lock
@@ -699,3 +699,23 @@ tools:
   - 36ea6d5441c3
   tool_panel_section_id: metagenomic_analysis
   tool_panel_section_label: Metagenomic Analysis
+- name: ampvis2_load
+  owner: iuc
+  revisions:
+  - 3481feabc54e
+  - 738474880da8
+  tool_panel_section_id: metagenomic_analysis
+  tool_panel_section_label: Metagenomic Analysis
+- name: mapseq
+  owner: iuc
+  revisions:
+  - 30e275ed0442
+  - f1d1dafc836d
+  tool_panel_section_id: metagenomic_analysis
+  tool_panel_section_label: Metagenomic Analysis
+- name: mgnify_seqprep
+  owner: bgruening
+  revisions:
+  - 76ea9d4604bc
+  tool_panel_section_id: metagenomic_analysis
+  tool_panel_section_label: Metagenomic Analysis
diff --git a/usegalaxy.org/nanopore.yml.lock b/usegalaxy.org/nanopore.yml.lock
index 3e44c8c6..b1fc9ffa 100644
--- a/usegalaxy.org/nanopore.yml.lock
+++ b/usegalaxy.org/nanopore.yml.lock
@@ -213,5 +213,6 @@ tools:
   owner: iuc
   revisions:
   - 3843a30053ee
+  - 63e02ef6e153
   tool_panel_section_id: nanopore
   tool_panel_section_label: Nanopore
diff --git a/usegalaxy.org/rna_analysis.yml b/usegalaxy.org/rna_analysis.yml
new file mode 100644
index 00000000..aa1239c1
--- /dev/null
+++ b/usegalaxy.org/rna_analysis.yml
@@ -0,0 +1,6 @@
+tool_panel_section_label: RNA Analysis
+tools:
+- name: cmsearch_deoverlap
+  owner: rnateam
+- name: infernal
+  owner: bgruening
diff --git a/usegalaxy.org/rna_analysis.yml.lock b/usegalaxy.org/rna_analysis.yml.lock
new file mode 100644
index 00000000..b55edba9
--- /dev/null
+++ b/usegalaxy.org/rna_analysis.yml.lock
@@ -0,0 +1,18 @@
+install_repository_dependencies: true
+install_resolver_dependencies: false
+install_tool_dependencies: false
+tool_panel_section_label: RNA Analysis
+tools:
+- name: cmsearch_deoverlap
+  owner: rnateam
+  revisions:
+  - 874ad23526a0
+  tool_panel_section_id: rna_analysis
+  tool_panel_section_label: RNA Analysis
+- name: infernal
+  owner: bgruening
+  revisions:
+  - 1d74ed49cf41
+  - c9e29ac5d099
+  tool_panel_section_id: rna_analysis
+  tool_panel_section_label: RNA Analysis