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# Publications

## 2017

@article{awad2017evaluating,
  title={Evaluating Metagenome Assembly on a Simple Defined Community with Many Strain Variants},
  author={Awad, Sherine and Irber, Luiz and Brown, C Titus},
  journal={bioRxiv},
  pages={155358},
  year={2017},
  publisher={Cold Spring Harbor Laboratory}
}

@article{batut2017community,
  title={Community-driven data analysis training for biology},
  author={Batut, B{\'e}r{\'e}nice and Hiltemann, Saskia and Bagnacani, Andrea and Baker, Dannon and Bhardwaj, Vivek and Blank, Clemens and Bretaudeau, Anthony and Gu{\'e}guen, Loraine and {\v{C}}ech, Martin and Chilton, John and others},
  journal={BioRxiv},
  pages={225680},
  year={2017},
  publisher={Cold Spring Harbor Laboratory}
}

@article{greenwald2017utilization,
  title={Utilization of defined microbial communities enables effective evaluation of meta-genomic assemblies},
  author={Greenwald, William W and Klitgord, Niels and Seguritan, Victor and Yooseph, Shibu and Venter, J Craig and Garner, Chad and Nelson, Karen E and Li, Weizhong},
  journal={BMC genomics},
  volume={18},
  number={1},
  pages={296},
  year={2017},
  publisher={BioMed Central}
}

@article{olson2017metagenomic,
  title={Metagenomic assembly through the lens of validation: recent advances in assessing and improving the quality of genomes assembled from metagenomes},
  author={Olson, Nathan D and Treangen, Todd J and Hill, Christopher M and Cepeda-Espinoza, Victoria and Ghurye, Jay and Koren, Sergey and Pop, Mihai},
  journal={Briefings in Bioinformatics},
  pages={bbx098},
  year={2017},
  publisher={Oxford University Press}
}

@article{quince2017shotgun,
  title={Shotgun metagenomics, from sampling to analysis},
  author={Quince, Christopher and Walker, Alan W and Simpson, Jared T and Loman, Nicholas J and Segata, Nicola},
  journal={Nature Biotechnology},
  volume={35},
  number={9},
  pages={nbt--3935},
  year={2017},
  publisher={Nature Publishing Group}
}

@article{sczyrba2017critical,
  title={Critical Assessment of Metagenome Interpretation- a benchmark of computational metagenomics software},
  author={Sczyrba, Alexander and Hofmann, Peter and Belmann, Peter and Koslicki, David and Janssen, Stefan and Droege, Johannes and Gregor, Ivan and Majda, Stephan and Fiedler, Jessika and Dahms, Eik and others},
  journal={Biorxiv},
  pages={099127},
  year={2017},
  publisher={Cold Spring Harbor Labs Journals}
}

@article{van2017assembling,
  title={Assembling metagenomes, one community at a time},
  author={van der Walt, Andries Johannes and Van Goethem, Marc Warwick and Ramond, Jean-Baptiste and Makhalanyane, Thulani Peter and Reva, Oleg and Cowan, Don Arthur},
  journal={bioRxiv},
  pages={120154},
  year={2017},
  publisher={Cold Spring Harbor Labs Journals}
}

@article{vollmers2017comparing,
  title={Comparing and Evaluating Metagenome Assembly Tools from a Microbiologist’s Perspective-Not Only Size Matters!},
  author={Vollmers, John and Wiegand, Sandra and Kaster, Anne-Kristin},
  journal={PloS one},
  volume={12},
  number={1},
  pages={e0169662},
  year={2017},
  publisher={Public Library of Science}
}

## 2016

## 2015

## 2014

## 2013

## 2012

## 2011

## 2010