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Issues list

fetching sequence failed error message when running pileup
#308 opened Nov 27, 2024 by niradsp
1
What does it say about our data that the m6a RNA modification rates seem somewhat low? question Looking for clarification on inputs and/or outputs
#307 opened Nov 27, 2024 by aleighbrown
4
High memory usage of modkit extract full troubleshooting workflow and data preparation questions
#306 opened Nov 27, 2024 by Shians
1
Question about the appropriate threshold for mod_qual question Looking for clarification on inputs and/or outputs
#305 opened Nov 25, 2024 by gyuhee0928
1
modkit installation in wsl question Looking for clarification on inputs and/or outputs
#303 opened Nov 20, 2024 by newbiezubi
4
Calling methylation at new CpG sites question Looking for clarification on inputs and/or outputs
#302 opened Nov 19, 2024 by sumudu-rangika
2
Entropy on strand enhancement New feature or request
#301 opened Nov 18, 2024 by Ge0rges
5
No methylation information was calculated for some reads troubleshooting workflow and data preparation questions
#299 opened Nov 13, 2024 by Wshengquan
3
Passing concated pileup to find-motifs question Looking for clarification on inputs and/or outputs
#298 opened Nov 12, 2024 by Ge0rges
2
Filtering accuracy question question Looking for clarification on inputs and/or outputs
#297 opened Nov 8, 2024 by Ge0rges
9
modkit extract full and modkit extract calls question Looking for clarification on inputs and/or outputs
#296 opened Nov 6, 2024 by Flower9618
1
Using segmenting on differential methylation question Looking for clarification on inputs and/or outputs
#295 opened Nov 5, 2024 by Raya-Faigenbaum-Romm
2
dmr multi will not create necessary directories bug Something isn't working troubleshooting workflow and data preparation questions
#294 opened Nov 5, 2024 by Yang990-sys
7
Documentation ambiguity documentation Improvements or additions to documentation
#293 opened Oct 31, 2024 by Ge0rges
1
how is calculate valid_coverage ? Different results between total read or subsample reads question Looking for clarification on inputs and/or outputs
#292 opened Oct 29, 2024 by DelphIONe
1
Install failed: fatal error: '-fuse-linker-plugin', but liblto_plugin.so not found troubleshooting workflow and data preparation questions
#291 opened Oct 28, 2024 by liuyang2006
1
How does Modkit handle long-read methylation 3D genomic data question Looking for clarification on inputs and/or outputs
#289 opened Oct 24, 2024 by biozzq
1
result from "modkit pileup" command question Looking for clarification on inputs and/or outputs
#288 opened Oct 22, 2024 by Flower9618
5
Modkit calling methylation on incompatible nucleotide question Looking for clarification on inputs and/or outputs
#286 opened Oct 20, 2024 by Ge0rges
17
Indexing error in dmr multi bug Something isn't working DMR modkit dmr troubleshooting workflow and data preparation questions
#285 opened Oct 18, 2024 by Ge0rges
4
Inferring Hypermethylated and Hypomethylated Bases from ModKit DMR Pair Results question Looking for clarification on inputs and/or outputs
#283 opened Oct 18, 2024 by Bhavesh-Tiwarekar
1
benchmark comparison of DMR detection tool DMR modkit dmr documentation Improvements or additions to documentation
#281 opened Oct 17, 2024 by charliechen912ilovbash
2
modkit dmr pair of pileup bed file subset to 4mC question Looking for clarification on inputs and/or outputs
#279 opened Oct 15, 2024 by SimonChen1997
6
Validity of correlation between different RNA modification calls enhancement New feature or request question Looking for clarification on inputs and/or outputs
#278 opened Oct 14, 2024 by mbosm
1
m6A methylation analysis and explanation of output files question Looking for clarification on inputs and/or outputs
#276 opened Oct 8, 2024 by JhinJhinJhin
10
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