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Execute the workflow #43

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Oksanak22 opened this issue Oct 17, 2022 · 0 comments
Open

Execute the workflow #43

Oksanak22 opened this issue Oct 17, 2022 · 0 comments

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@Oksanak22
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I create and activate the env:

  1. [name@beluga2 ~]$ virtualenv venv_pore_c && source venv_pore_c/bin/activate
  2. [name@beluga2 ~]$ pip install --no-index --upgrade pip
  3. [name@beluga2 ~]$ pip install --no-index pore_c
    After I tried to execute the workflow locally:
    (venv_pore_c) [name@beluga2 ~]$ snakemake --cores $N

And I got an error:
Error: no Snakefile found, tried Snakefile, snakefile, workflow/Snakefile, workflow/snakefile.

Do you have any idea how to fix this error?
Thank you

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